Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03362

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03361 and MPMX20_03362 are separated by 111 nucleotidesMPMX20_03362 and MPMX20_03363 are separated by 11 nucleotidesMPMX20_03363 and MPMX20_03364 are separated by 45 nucleotides MPMX20_03361: MPMX20_03361 - hypothetical protein, at 3,537,717 to 3,538,910 _03361 MPMX20_03362: MPMX20_03362 - hypothetical protein, at 3,539,022 to 3,539,489 _03362 MPMX20_03363: MPMX20_03363 - hypothetical protein, at 3,539,501 to 3,540,244 _03363 MPMX20_03364: MPMX20_03364 - hypothetical protein, at 3,540,290 to 3,540,736 _03364 Position (kb) 3539 3540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3538.067 kb on - strand, within MPMX20_03361at 3538.074 kb on - strand, within MPMX20_03361at 3538.082 kb on - strand, within MPMX20_03361at 3538.117 kb on + strand, within MPMX20_03361at 3538.130 kb on + strand, within MPMX20_03361at 3538.177 kb on + strand, within MPMX20_03361at 3538.183 kb on - strand, within MPMX20_03361at 3538.185 kb on - strand, within MPMX20_03361at 3538.185 kb on - strand, within MPMX20_03361at 3538.223 kb on - strand, within MPMX20_03361at 3538.228 kb on - strand, within MPMX20_03361at 3538.231 kb on + strand, within MPMX20_03361at 3538.241 kb on + strand, within MPMX20_03361at 3538.241 kb on + strand, within MPMX20_03361at 3538.249 kb on - strand, within MPMX20_03361at 3538.318 kb on + strand, within MPMX20_03361at 3538.417 kb on + strand, within MPMX20_03361at 3538.440 kb on + strand, within MPMX20_03361at 3538.485 kb on - strand, within MPMX20_03361at 3538.501 kb on + strand, within MPMX20_03361at 3538.501 kb on + strand, within MPMX20_03361at 3538.524 kb on - strand, within MPMX20_03361at 3538.553 kb on - strand, within MPMX20_03361at 3538.571 kb on - strand, within MPMX20_03361at 3538.571 kb on - strand, within MPMX20_03361at 3538.571 kb on - strand, within MPMX20_03361at 3538.613 kb on - strand, within MPMX20_03361at 3538.618 kb on - strand, within MPMX20_03361at 3538.707 kb on - strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.724 kb on + strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.732 kb on - strand, within MPMX20_03361at 3538.796 kb on + strandat 3538.842 kb on + strandat 3538.852 kb on + strandat 3538.880 kb on - strandat 3538.895 kb on - strandat 3538.907 kb on - strandat 3538.942 kb on + strandat 3539.017 kb on + strandat 3539.055 kb on + strandat 3539.088 kb on - strand, within MPMX20_03362at 3539.093 kb on + strand, within MPMX20_03362at 3539.107 kb on - strand, within MPMX20_03362at 3539.107 kb on - strand, within MPMX20_03362at 3539.149 kb on + strand, within MPMX20_03362at 3539.157 kb on - strand, within MPMX20_03362at 3539.201 kb on + strand, within MPMX20_03362at 3539.209 kb on - strand, within MPMX20_03362at 3539.209 kb on - strand, within MPMX20_03362at 3539.228 kb on - strand, within MPMX20_03362at 3539.233 kb on + strand, within MPMX20_03362at 3539.233 kb on + strand, within MPMX20_03362at 3539.300 kb on + strand, within MPMX20_03362at 3539.308 kb on - strand, within MPMX20_03362at 3539.325 kb on + strand, within MPMX20_03362at 3539.325 kb on + strand, within MPMX20_03362at 3539.325 kb on + strand, within MPMX20_03362at 3539.325 kb on + strand, within MPMX20_03362at 3539.378 kb on - strand, within MPMX20_03362at 3539.387 kb on + strand, within MPMX20_03362at 3539.420 kb on + strand, within MPMX20_03362at 3539.519 kb on - strandat 3539.519 kb on - strandat 3539.524 kb on - strandat 3539.744 kb on - strand, within MPMX20_03363at 3539.797 kb on - strand, within MPMX20_03363at 3539.803 kb on + strand, within MPMX20_03363at 3539.872 kb on + strand, within MPMX20_03363at 3539.874 kb on - strand, within MPMX20_03363at 3539.882 kb on + strand, within MPMX20_03363at 3539.979 kb on + strand, within MPMX20_03363at 3540.014 kb on - strand, within MPMX20_03363at 3540.024 kb on - strand, within MPMX20_03363at 3540.078 kb on + strand, within MPMX20_03363at 3540.111 kb on + strand, within MPMX20_03363at 3540.180 kb on + strandat 3540.226 kb on + strandat 3540.248 kb on + strandat 3540.280 kb on - strandat 3540.290 kb on - strandat 3540.307 kb on + strandat 3540.315 kb on - strandat 3540.333 kb on + strandat 3540.443 kb on - strand, within MPMX20_03364

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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3,538,067 - MPMX20_03361 0.29 -1.1
3,538,074 - MPMX20_03361 0.30 -0.1
3,538,082 - MPMX20_03361 0.31 +0.7
3,538,117 + MPMX20_03361 0.34 -2.2
3,538,130 + MPMX20_03361 0.35 -1.4
3,538,177 + MPMX20_03361 0.39 -1.9
3,538,183 - MPMX20_03361 0.39 -2.0
3,538,185 - MPMX20_03361 0.39 -1.0
3,538,185 - MPMX20_03361 0.39 +0.5
3,538,223 - MPMX20_03361 0.42 -2.2
3,538,228 - MPMX20_03361 0.43 +0.9
3,538,231 + MPMX20_03361 0.43 -0.4
3,538,241 + MPMX20_03361 0.44 +1.1
3,538,241 + MPMX20_03361 0.44 +0.1
3,538,249 - MPMX20_03361 0.45 +0.1
3,538,318 + MPMX20_03361 0.50 +0.1
3,538,417 + MPMX20_03361 0.59 -3.4
3,538,440 + MPMX20_03361 0.61 +0.8
3,538,485 - MPMX20_03361 0.64 +0.2
3,538,501 + MPMX20_03361 0.66 -0.9
3,538,501 + MPMX20_03361 0.66 -1.7
3,538,524 - MPMX20_03361 0.68 +0.9
3,538,553 - MPMX20_03361 0.70 +1.4
3,538,571 - MPMX20_03361 0.72 +1.4
3,538,571 - MPMX20_03361 0.72 -1.2
3,538,571 - MPMX20_03361 0.72 -2.5
3,538,613 - MPMX20_03361 0.75 +2.6
3,538,618 - MPMX20_03361 0.75 -0.6
3,538,707 - MPMX20_03361 0.83 +0.5
3,538,724 + MPMX20_03361 0.84 -1.1
3,538,724 + MPMX20_03361 0.84 -0.7
3,538,724 + MPMX20_03361 0.84 -0.8
3,538,724 + MPMX20_03361 0.84 +0.5
3,538,724 + MPMX20_03361 0.84 -0.4
3,538,724 + MPMX20_03361 0.84 +0.4
3,538,732 - MPMX20_03361 0.85 -3.2
3,538,732 - MPMX20_03361 0.85 -2.2
3,538,732 - MPMX20_03361 0.85 -3.3
3,538,732 - MPMX20_03361 0.85 +0.6
3,538,732 - MPMX20_03361 0.85 +2.1
3,538,732 - MPMX20_03361 0.85 -0.4
3,538,732 - MPMX20_03361 0.85 -2.8
3,538,732 - MPMX20_03361 0.85 +0.3
3,538,796 + -0.4
3,538,842 + +0.8
3,538,852 + -2.4
3,538,880 - +1.4
3,538,895 - -0.7
3,538,907 - -2.6
3,538,942 + +0.8
3,539,017 + +1.1
3,539,055 + +0.3
3,539,088 - MPMX20_03362 0.14 +2.2
3,539,093 + MPMX20_03362 0.15 +1.0
3,539,107 - MPMX20_03362 0.18 +2.6
3,539,107 - MPMX20_03362 0.18 +0.1
3,539,149 + MPMX20_03362 0.27 +0.8
3,539,157 - MPMX20_03362 0.29 -0.7
3,539,201 + MPMX20_03362 0.38 -0.1
3,539,209 - MPMX20_03362 0.40 +2.5
3,539,209 - MPMX20_03362 0.40 +0.1
3,539,228 - MPMX20_03362 0.44 +0.9
3,539,233 + MPMX20_03362 0.45 +1.4
3,539,233 + MPMX20_03362 0.45 -0.6
3,539,300 + MPMX20_03362 0.59 -3.2
3,539,308 - MPMX20_03362 0.61 -2.8
3,539,325 + MPMX20_03362 0.65 +2.3
3,539,325 + MPMX20_03362 0.65 +1.4
3,539,325 + MPMX20_03362 0.65 -0.7
3,539,325 + MPMX20_03362 0.65 -0.2
3,539,378 - MPMX20_03362 0.76 +1.6
3,539,387 + MPMX20_03362 0.78 -0.4
3,539,420 + MPMX20_03362 0.85 +0.4
3,539,519 - -2.2
3,539,519 - -3.2
3,539,524 - +1.1
3,539,744 - MPMX20_03363 0.33 +0.2
3,539,797 - MPMX20_03363 0.40 +2.1
3,539,803 + MPMX20_03363 0.41 +1.2
3,539,872 + MPMX20_03363 0.50 -1.2
3,539,874 - MPMX20_03363 0.50 +0.7
3,539,882 + MPMX20_03363 0.51 +1.7
3,539,979 + MPMX20_03363 0.64 +1.2
3,540,014 - MPMX20_03363 0.69 +0.1
3,540,024 - MPMX20_03363 0.70 +0.9
3,540,078 + MPMX20_03363 0.78 -2.0
3,540,111 + MPMX20_03363 0.82 +0.5
3,540,180 + -1.0
3,540,226 + +0.6
3,540,248 + -0.1
3,540,280 - +1.6
3,540,290 - +1.6
3,540,307 + +0.8
3,540,315 - +1.2
3,540,333 + -0.9
3,540,443 - MPMX20_03364 0.34 -1.2

Or see this region's nucleotide sequence