Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00473

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00470 and MPMX20_00471 are separated by 12 nucleotidesMPMX20_00471 and MPMX20_00472 are separated by 9 nucleotidesMPMX20_00472 and MPMX20_00473 are separated by 13 nucleotidesMPMX20_00473 and MPMX20_00474 are separated by 9 nucleotidesMPMX20_00474 and MPMX20_00475 overlap by 8 nucleotides MPMX20_00470: MPMX20_00470 - Ascorbate-specific PTS system EIIC component, at 486,855 to 488,255 _00470 MPMX20_00471: MPMX20_00471 - Ascorbate-specific PTS system EIIB component, at 488,268 to 488,573 _00471 MPMX20_00472: MPMX20_00472 - Ascorbate-specific PTS system EIIA component, at 488,583 to 489,050 _00472 MPMX20_00473: MPMX20_00473 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 489,064 to 489,714 _00473 MPMX20_00474: MPMX20_00474 - L-ribulose-5-phosphate 3-epimerase UlaE, at 489,724 to 490,584 _00474 MPMX20_00475: MPMX20_00475 - L-ribulose-5-phosphate 4-epimerase UlaF, at 490,577 to 491,263 _00475 Position (kb) 489 490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 488.075 kb on + strand, within MPMX20_00470at 488.082 kb on - strand, within MPMX20_00470at 488.092 kb on + strand, within MPMX20_00470at 488.114 kb on + strand, within MPMX20_00470at 488.115 kb on + strand, within MPMX20_00470at 488.115 kb on + strand, within MPMX20_00470at 488.121 kb on + strandat 488.123 kb on - strandat 488.123 kb on - strandat 488.136 kb on + strandat 488.141 kb on + strandat 488.169 kb on + strandat 488.177 kb on - strandat 488.275 kb on + strandat 488.275 kb on + strandat 488.283 kb on - strandat 488.283 kb on - strandat 488.287 kb on - strandat 488.289 kb on + strandat 488.291 kb on + strandat 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.309 kb on - strand, within MPMX20_00471at 488.354 kb on + strand, within MPMX20_00471at 488.366 kb on - strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.380 kb on + strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.482 kb on + strand, within MPMX20_00471at 488.487 kb on + strand, within MPMX20_00471at 488.521 kb on + strand, within MPMX20_00471at 488.574 kb on + strandat 488.589 kb on - strandat 488.589 kb on - strandat 488.614 kb on + strandat 488.644 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.736 kb on + strand, within MPMX20_00472at 488.739 kb on - strand, within MPMX20_00472at 488.747 kb on - strand, within MPMX20_00472at 488.791 kb on + strand, within MPMX20_00472at 488.818 kb on + strand, within MPMX20_00472at 488.828 kb on + strand, within MPMX20_00472at 488.865 kb on + strand, within MPMX20_00472at 488.883 kb on - strand, within MPMX20_00472at 488.894 kb on - strand, within MPMX20_00472at 488.905 kb on - strand, within MPMX20_00472at 488.920 kb on + strand, within MPMX20_00472at 488.928 kb on - strand, within MPMX20_00472at 488.962 kb on - strand, within MPMX20_00472at 488.974 kb on - strand, within MPMX20_00472at 488.974 kb on - strand, within MPMX20_00472at 489.045 kb on + strandat 489.053 kb on - strandat 489.101 kb on - strandat 489.106 kb on - strandat 489.106 kb on - strandat 489.116 kb on - strandat 489.175 kb on - strand, within MPMX20_00473at 489.327 kb on - strand, within MPMX20_00473at 489.345 kb on + strand, within MPMX20_00473at 489.345 kb on + strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.424 kb on - strand, within MPMX20_00473at 489.440 kb on - strand, within MPMX20_00473at 489.445 kb on - strand, within MPMX20_00473at 489.479 kb on + strand, within MPMX20_00473at 489.502 kb on + strand, within MPMX20_00473at 489.551 kb on + strand, within MPMX20_00473at 489.600 kb on + strand, within MPMX20_00473at 489.600 kb on + strand, within MPMX20_00473at 489.600 kb on + strand, within MPMX20_00473at 489.600 kb on + strand, within MPMX20_00473at 489.600 kb on + strand, within MPMX20_00473at 489.608 kb on - strand, within MPMX20_00473at 489.608 kb on - strand, within MPMX20_00473at 489.608 kb on - strand, within MPMX20_00473at 489.624 kb on + strand, within MPMX20_00473at 489.702 kb on + strandat 489.702 kb on + strandat 489.702 kb on + strandat 489.702 kb on + strandat 489.708 kb on + strandat 489.710 kb on - strandat 489.763 kb on + strandat 489.778 kb on - strandat 489.780 kb on + strandat 489.864 kb on + strand, within MPMX20_00474at 489.868 kb on + strand, within MPMX20_00474at 489.874 kb on + strand, within MPMX20_00474at 489.876 kb on - strand, within MPMX20_00474at 489.889 kb on - strand, within MPMX20_00474at 489.901 kb on - strand, within MPMX20_00474at 489.980 kb on + strand, within MPMX20_00474at 489.992 kb on - strand, within MPMX20_00474at 490.044 kb on + strand, within MPMX20_00474at 490.133 kb on + strand, within MPMX20_00474at 490.160 kb on + strand, within MPMX20_00474at 490.168 kb on - strand, within MPMX20_00474at 490.170 kb on + strand, within MPMX20_00474at 490.178 kb on - strand, within MPMX20_00474at 490.230 kb on + strand, within MPMX20_00474at 490.230 kb on + strand, within MPMX20_00474at 490.238 kb on - strand, within MPMX20_00474at 490.238 kb on - strand, within MPMX20_00474at 490.307 kb on - strand, within MPMX20_00474at 490.307 kb on - strand, within MPMX20_00474at 490.349 kb on - strand, within MPMX20_00474at 490.403 kb on - strand, within MPMX20_00474at 490.460 kb on + strand, within MPMX20_00474at 490.460 kb on + strand, within MPMX20_00474at 490.468 kb on - strand, within MPMX20_00474at 490.476 kb on + strand, within MPMX20_00474at 490.476 kb on + strand, within MPMX20_00474at 490.567 kb on - strandat 490.584 kb on + strandat 490.584 kb on + strandat 490.586 kb on - strandat 490.587 kb on - strandat 490.592 kb on - strandat 490.592 kb on - strandat 490.634 kb on + strandat 490.651 kb on + strand, within MPMX20_00475at 490.653 kb on - strand, within MPMX20_00475at 490.665 kb on - strand, within MPMX20_00475at 490.671 kb on + strand, within MPMX20_00475at 490.679 kb on - strand, within MPMX20_00475at 490.679 kb on - strand, within MPMX20_00475at 490.699 kb on + strand, within MPMX20_00475at 490.699 kb on + strand, within MPMX20_00475at 490.707 kb on - strand, within MPMX20_00475at 490.711 kb on + strand, within MPMX20_00475

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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488,075 + MPMX20_00470 0.87 -1.5
488,082 - MPMX20_00470 0.88 -2.9
488,092 + MPMX20_00470 0.88 +0.5
488,114 + MPMX20_00470 0.90 -1.0
488,115 + MPMX20_00470 0.90 -0.3
488,115 + MPMX20_00470 0.90 -2.8
488,121 + +1.8
488,123 - +1.1
488,123 - +0.9
488,136 + +0.1
488,141 + +1.5
488,169 + +0.7
488,177 - +1.7
488,275 + -1.1
488,275 + -0.8
488,283 - +0.4
488,283 - -0.1
488,287 - -1.8
488,289 + -1.4
488,291 + -2.4
488,301 + MPMX20_00471 0.11 +1.9
488,301 + MPMX20_00471 0.11 -2.3
488,301 + MPMX20_00471 0.11 -0.4
488,301 + MPMX20_00471 0.11 -1.0
488,301 + MPMX20_00471 0.11 -2.3
488,309 - MPMX20_00471 0.13 +0.8
488,354 + MPMX20_00471 0.28 -0.6
488,366 - MPMX20_00471 0.32 +1.6
488,373 + MPMX20_00471 0.34 -0.2
488,373 + MPMX20_00471 0.34 -1.0
488,373 + MPMX20_00471 0.34 -3.4
488,373 + MPMX20_00471 0.34 +1.7
488,380 + MPMX20_00471 0.37 +1.2
488,381 - MPMX20_00471 0.37 -0.8
488,381 - MPMX20_00471 0.37 -2.5
488,381 - MPMX20_00471 0.37 +0.8
488,381 - MPMX20_00471 0.37 -2.6
488,381 - MPMX20_00471 0.37 +0.3
488,381 - MPMX20_00471 0.37 +0.3
488,381 - MPMX20_00471 0.37 +0.3
488,381 - MPMX20_00471 0.37 -0.3
488,434 + MPMX20_00471 0.54 +0.3
488,434 + MPMX20_00471 0.54 +1.7
488,434 + MPMX20_00471 0.54 -1.7
488,442 - MPMX20_00471 0.57 -0.4
488,442 - MPMX20_00471 0.57 -0.1
488,442 - MPMX20_00471 0.57 +1.5
488,482 + MPMX20_00471 0.70 +2.1
488,487 + MPMX20_00471 0.72 +0.7
488,521 + MPMX20_00471 0.83 -1.7
488,574 + -2.5
488,589 - -0.2
488,589 - +0.3
488,614 + -3.0
488,644 + MPMX20_00472 0.13 +0.5
488,731 + MPMX20_00472 0.32 -0.9
488,731 + MPMX20_00472 0.32 +0.6
488,731 + MPMX20_00472 0.32 +0.5
488,731 + MPMX20_00472 0.32 +1.9
488,736 + MPMX20_00472 0.33 +3.1
488,739 - MPMX20_00472 0.33 +0.7
488,747 - MPMX20_00472 0.35 +0.6
488,791 + MPMX20_00472 0.44 +0.2
488,818 + MPMX20_00472 0.50 -0.9
488,828 + MPMX20_00472 0.52 +1.5
488,865 + MPMX20_00472 0.60 -0.1
488,883 - MPMX20_00472 0.64 -2.1
488,894 - MPMX20_00472 0.66 -0.1
488,905 - MPMX20_00472 0.69 -0.1
488,920 + MPMX20_00472 0.72 +0.1
488,928 - MPMX20_00472 0.74 +0.9
488,962 - MPMX20_00472 0.81 +0.1
488,974 - MPMX20_00472 0.84 -2.6
488,974 - MPMX20_00472 0.84 +1.3
489,045 + -1.7
489,053 - -0.1
489,101 - -0.1
489,106 - -4.2
489,106 - -1.8
489,116 - -3.1
489,175 - MPMX20_00473 0.17 +0.1
489,327 - MPMX20_00473 0.40 -0.7
489,345 + MPMX20_00473 0.43 -0.3
489,345 + MPMX20_00473 0.43 +0.1
489,353 - MPMX20_00473 0.44 -0.7
489,353 - MPMX20_00473 0.44 -1.3
489,353 - MPMX20_00473 0.44 -1.6
489,353 - MPMX20_00473 0.44 +0.5
489,424 - MPMX20_00473 0.55 +0.2
489,440 - MPMX20_00473 0.58 -1.3
489,445 - MPMX20_00473 0.59 -0.5
489,479 + MPMX20_00473 0.64 -1.2
489,502 + MPMX20_00473 0.67 -1.4
489,551 + MPMX20_00473 0.75 +0.6
489,600 + MPMX20_00473 0.82 -3.3
489,600 + MPMX20_00473 0.82 -2.5
489,600 + MPMX20_00473 0.82 -1.4
489,600 + MPMX20_00473 0.82 +0.5
489,600 + MPMX20_00473 0.82 -0.9
489,608 - MPMX20_00473 0.84 -0.7
489,608 - MPMX20_00473 0.84 +1.3
489,608 - MPMX20_00473 0.84 +2.2
489,624 + MPMX20_00473 0.86 -0.2
489,702 + +0.4
489,702 + -1.7
489,702 + -3.8
489,702 + +1.0
489,708 + -1.8
489,710 - -0.2
489,763 + -0.7
489,778 - -0.5
489,780 + -0.4
489,864 + MPMX20_00474 0.16 +1.1
489,868 + MPMX20_00474 0.17 +0.9
489,874 + MPMX20_00474 0.17 +0.5
489,876 - MPMX20_00474 0.18 +1.0
489,889 - MPMX20_00474 0.19 -2.4
489,901 - MPMX20_00474 0.21 -2.5
489,980 + MPMX20_00474 0.30 +0.6
489,992 - MPMX20_00474 0.31 +0.8
490,044 + MPMX20_00474 0.37 +0.2
490,133 + MPMX20_00474 0.48 -1.1
490,160 + MPMX20_00474 0.51 +1.6
490,168 - MPMX20_00474 0.52 +2.1
490,170 + MPMX20_00474 0.52 +4.1
490,178 - MPMX20_00474 0.53 -0.1
490,230 + MPMX20_00474 0.59 +1.0
490,230 + MPMX20_00474 0.59 +3.2
490,238 - MPMX20_00474 0.60 +3.9
490,238 - MPMX20_00474 0.60 +1.1
490,307 - MPMX20_00474 0.68 -0.7
490,307 - MPMX20_00474 0.68 -4.3
490,349 - MPMX20_00474 0.73 -0.6
490,403 - MPMX20_00474 0.79 +1.3
490,460 + MPMX20_00474 0.85 +0.9
490,460 + MPMX20_00474 0.85 +0.9
490,468 - MPMX20_00474 0.86 -3.8
490,476 + MPMX20_00474 0.87 -0.1
490,476 + MPMX20_00474 0.87 -2.2
490,567 - -0.0
490,584 + +2.6
490,584 + -2.4
490,586 - -2.4
490,587 - -0.6
490,592 - +0.9
490,592 - -1.7
490,634 + +0.7
490,651 + MPMX20_00475 0.11 -0.1
490,653 - MPMX20_00475 0.11 -0.7
490,665 - MPMX20_00475 0.13 +1.7
490,671 + MPMX20_00475 0.14 -0.7
490,679 - MPMX20_00475 0.15 +0.3
490,679 - MPMX20_00475 0.15 -0.7
490,699 + MPMX20_00475 0.18 +0.4
490,699 + MPMX20_00475 0.18 +1.0
490,707 - MPMX20_00475 0.19 +0.3
490,711 + MPMX20_00475 0.20 +0.3

Or see this region's nucleotide sequence