Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00054

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00052 and MPMX20_00053 are separated by 11 nucleotidesMPMX20_00053 and MPMX20_00054 are separated by 293 nucleotidesMPMX20_00054 and MPMX20_00055 are separated by 27 nucleotidesMPMX20_00055 and MPMX20_00056 are separated by 131 nucleotides MPMX20_00052: MPMX20_00052 - Lichenan permease IIC component, at 51,565 to 52,890 _00052 MPMX20_00053: MPMX20_00053 - PTS system cellobiose-specific EIIB component, at 52,902 to 53,216 _00053 MPMX20_00054: MPMX20_00054 - Catabolite control protein A, at 53,510 to 54,460 _00054 MPMX20_00055: MPMX20_00055 - hypothetical protein, at 54,488 to 54,784 _00055 MPMX20_00056: MPMX20_00056 - Outer membrane protein OprM, at 54,916 to 56,280 _00056 Position (kb) 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 52.573 kb on - strand, within MPMX20_00052at 52.579 kb on + strand, within MPMX20_00052at 52.579 kb on + strand, within MPMX20_00052at 52.590 kb on + strand, within MPMX20_00052at 52.592 kb on - strand, within MPMX20_00052at 52.592 kb on - strand, within MPMX20_00052at 52.598 kb on - strand, within MPMX20_00052at 52.629 kb on + strand, within MPMX20_00052at 52.633 kb on - strand, within MPMX20_00052at 52.643 kb on - strand, within MPMX20_00052at 52.661 kb on + strand, within MPMX20_00052at 52.669 kb on - strand, within MPMX20_00052at 52.699 kb on + strand, within MPMX20_00052at 52.732 kb on + strand, within MPMX20_00052at 52.751 kb on - strand, within MPMX20_00052at 52.810 kb on - strandat 52.893 kb on - strandat 52.906 kb on - strandat 52.906 kb on - strandat 52.925 kb on + strandat 52.930 kb on + strandat 52.930 kb on + strandat 52.933 kb on - strandat 52.935 kb on + strand, within MPMX20_00053at 52.935 kb on + strand, within MPMX20_00053at 52.935 kb on + strand, within MPMX20_00053at 52.936 kb on - strand, within MPMX20_00053at 52.943 kb on - strand, within MPMX20_00053at 52.943 kb on - strand, within MPMX20_00053at 52.953 kb on + strand, within MPMX20_00053at 52.953 kb on + strand, within MPMX20_00053at 52.956 kb on + strand, within MPMX20_00053at 52.963 kb on + strand, within MPMX20_00053at 53.016 kb on + strand, within MPMX20_00053at 53.016 kb on + strand, within MPMX20_00053at 53.024 kb on - strand, within MPMX20_00053at 53.024 kb on - strand, within MPMX20_00053at 53.065 kb on + strand, within MPMX20_00053at 53.065 kb on + strand, within MPMX20_00053at 53.065 kb on + strand, within MPMX20_00053at 53.065 kb on + strand, within MPMX20_00053at 53.073 kb on - strand, within MPMX20_00053at 53.102 kb on + strand, within MPMX20_00053at 53.181 kb on + strand, within MPMX20_00053at 53.199 kb on - strandat 53.310 kb on - strandat 53.311 kb on - strandat 53.449 kb on + strandat 53.457 kb on - strandat 53.480 kb on + strandat 53.548 kb on + strandat 53.548 kb on + strandat 53.548 kb on + strandat 53.569 kb on + strandat 53.589 kb on + strandat 53.597 kb on - strandat 53.597 kb on - strandat 53.602 kb on - strandat 53.605 kb on + strand, within MPMX20_00054at 53.665 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.669 kb on + strand, within MPMX20_00054at 53.691 kb on + strand, within MPMX20_00054at 53.696 kb on + strand, within MPMX20_00054at 53.696 kb on + strand, within MPMX20_00054at 53.726 kb on - strand, within MPMX20_00054at 53.768 kb on - strand, within MPMX20_00054at 53.869 kb on - strand, within MPMX20_00054at 53.902 kb on + strand, within MPMX20_00054at 53.910 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.930 kb on - strand, within MPMX20_00054at 53.933 kb on - strand, within MPMX20_00054at 54.002 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.023 kb on + strand, within MPMX20_00054at 54.026 kb on - strand, within MPMX20_00054at 54.031 kb on - strand, within MPMX20_00054at 54.073 kb on - strand, within MPMX20_00054at 54.139 kb on + strand, within MPMX20_00054at 54.155 kb on + strand, within MPMX20_00054at 54.174 kb on - strand, within MPMX20_00054at 54.233 kb on + strand, within MPMX20_00054at 54.276 kb on + strand, within MPMX20_00054at 54.284 kb on - strand, within MPMX20_00054at 54.285 kb on - strand, within MPMX20_00054at 54.292 kb on - strand, within MPMX20_00054at 54.403 kb on + strandat 54.409 kb on + strandat 54.411 kb on + strandat 54.411 kb on + strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.419 kb on - strandat 54.428 kb on + strandat 54.479 kb on + strandat 54.551 kb on + strand, within MPMX20_00055at 54.559 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.656 kb on - strand, within MPMX20_00055at 54.659 kb on + strand, within MPMX20_00055at 54.727 kb on + strand, within MPMX20_00055at 54.755 kb on - strandat 54.760 kb on + strandat 54.768 kb on - strandat 54.769 kb on + strandat 54.772 kb on - strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.801 kb on + strandat 54.846 kb on - strandat 54.925 kb on - strandat 54.926 kb on + strandat 54.937 kb on - strandat 54.948 kb on + strandat 54.983 kb on - strandat 54.983 kb on - strandat 55.001 kb on + strandat 55.002 kb on - strandat 55.006 kb on + strandat 55.056 kb on + strand, within MPMX20_00056at 55.056 kb on + strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.064 kb on - strand, within MPMX20_00056at 55.227 kb on + strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.270 kb on - strand, within MPMX20_00056at 55.272 kb on + strand, within MPMX20_00056at 55.279 kb on + strand, within MPMX20_00056at 55.288 kb on - strand, within MPMX20_00056at 55.290 kb on - strand, within MPMX20_00056at 55.323 kb on + strand, within MPMX20_00056at 55.400 kb on + strand, within MPMX20_00056

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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52,573 - MPMX20_00052 0.76 +0.9
52,579 + MPMX20_00052 0.76 -0.1
52,579 + MPMX20_00052 0.76 -1.6
52,590 + MPMX20_00052 0.77 +0.5
52,592 - MPMX20_00052 0.77 -1.3
52,592 - MPMX20_00052 0.77 -2.3
52,598 - MPMX20_00052 0.78 -0.6
52,629 + MPMX20_00052 0.80 +0.5
52,633 - MPMX20_00052 0.81 -0.0
52,643 - MPMX20_00052 0.81 +0.5
52,661 + MPMX20_00052 0.83 -0.5
52,669 - MPMX20_00052 0.83 +2.2
52,699 + MPMX20_00052 0.86 -3.0
52,732 + MPMX20_00052 0.88 -0.6
52,751 - MPMX20_00052 0.89 +0.6
52,810 - -2.0
52,893 - +0.3
52,906 - -1.2
52,906 - -3.6
52,925 + -3.7
52,930 + +0.1
52,930 + +1.0
52,933 - +0.5
52,935 + MPMX20_00053 0.10 -2.2
52,935 + MPMX20_00053 0.10 +1.4
52,935 + MPMX20_00053 0.10 -2.6
52,936 - MPMX20_00053 0.11 -3.7
52,943 - MPMX20_00053 0.13 -0.6
52,943 - MPMX20_00053 0.13 -1.0
52,953 + MPMX20_00053 0.16 -2.6
52,953 + MPMX20_00053 0.16 -2.8
52,956 + MPMX20_00053 0.17 +1.2
52,963 + MPMX20_00053 0.19 -0.4
53,016 + MPMX20_00053 0.36 +0.1
53,016 + MPMX20_00053 0.36 -1.7
53,024 - MPMX20_00053 0.39 -1.5
53,024 - MPMX20_00053 0.39 -1.0
53,065 + MPMX20_00053 0.52 +1.0
53,065 + MPMX20_00053 0.52 +2.2
53,065 + MPMX20_00053 0.52 +0.6
53,065 + MPMX20_00053 0.52 -2.7
53,073 - MPMX20_00053 0.54 -2.0
53,102 + MPMX20_00053 0.63 -3.0
53,181 + MPMX20_00053 0.89 -2.1
53,199 - -0.5
53,310 - -0.3
53,311 - -0.3
53,449 + -0.6
53,457 - +1.2
53,480 + -0.1
53,548 + +1.5
53,548 + +1.0
53,548 + -1.3
53,569 + +0.1
53,589 + -0.6
53,597 - +1.1
53,597 - +1.8
53,602 - +1.7
53,605 + MPMX20_00054 0.10 +0.8
53,665 + MPMX20_00054 0.16 -1.2
53,669 + MPMX20_00054 0.17 -1.1
53,669 + MPMX20_00054 0.17 -0.3
53,669 + MPMX20_00054 0.17 -2.9
53,691 + MPMX20_00054 0.19 +1.1
53,696 + MPMX20_00054 0.20 +0.8
53,696 + MPMX20_00054 0.20 -2.6
53,726 - MPMX20_00054 0.23 -0.4
53,768 - MPMX20_00054 0.27 -0.7
53,869 - MPMX20_00054 0.38 +3.2
53,902 + MPMX20_00054 0.41 -1.8
53,910 - MPMX20_00054 0.42 -1.0
53,930 - MPMX20_00054 0.44 -1.1
53,930 - MPMX20_00054 0.44 -1.0
53,933 - MPMX20_00054 0.44 -1.0
54,002 + MPMX20_00054 0.52 -2.7
54,023 + MPMX20_00054 0.54 -3.0
54,023 + MPMX20_00054 0.54 +2.0
54,023 + MPMX20_00054 0.54 -0.9
54,023 + MPMX20_00054 0.54 +1.1
54,023 + MPMX20_00054 0.54 -0.4
54,023 + MPMX20_00054 0.54 -0.9
54,026 - MPMX20_00054 0.54 +0.9
54,031 - MPMX20_00054 0.55 -0.6
54,073 - MPMX20_00054 0.59 -3.2
54,139 + MPMX20_00054 0.66 -2.1
54,155 + MPMX20_00054 0.68 -1.8
54,174 - MPMX20_00054 0.70 -0.8
54,233 + MPMX20_00054 0.76 -0.8
54,276 + MPMX20_00054 0.81 -3.0
54,284 - MPMX20_00054 0.81 +0.3
54,285 - MPMX20_00054 0.81 +1.0
54,292 - MPMX20_00054 0.82 +0.4
54,403 + +0.8
54,409 + +0.5
54,411 + -1.6
54,411 + -0.0
54,419 - -2.2
54,419 - -0.0
54,419 - -0.7
54,428 + -3.5
54,479 + +0.1
54,551 + MPMX20_00055 0.21 -0.5
54,559 - MPMX20_00055 0.24 -1.3
54,656 - MPMX20_00055 0.57 -3.8
54,656 - MPMX20_00055 0.57 +0.2
54,656 - MPMX20_00055 0.57 -0.2
54,656 - MPMX20_00055 0.57 -1.1
54,659 + MPMX20_00055 0.58 +0.0
54,727 + MPMX20_00055 0.80 +0.5
54,755 - -0.1
54,760 + -0.8
54,768 - +1.9
54,769 + +4.1
54,772 - -1.2
54,801 + -2.9
54,801 + -0.7
54,801 + +0.2
54,846 - -0.5
54,925 - -2.4
54,926 + +1.6
54,937 - -0.9
54,948 + -1.0
54,983 - -3.9
54,983 - +3.7
55,001 + +0.4
55,002 - +1.5
55,006 + +0.6
55,056 + MPMX20_00056 0.10 -0.7
55,056 + MPMX20_00056 0.10 -0.0
55,064 - MPMX20_00056 0.11 +1.0
55,064 - MPMX20_00056 0.11 +0.2
55,064 - MPMX20_00056 0.11 -1.2
55,227 + MPMX20_00056 0.23 +0.4
55,270 - MPMX20_00056 0.26 +0.9
55,270 - MPMX20_00056 0.26 +0.6
55,272 + MPMX20_00056 0.26 +1.1
55,279 + MPMX20_00056 0.27 +1.7
55,288 - MPMX20_00056 0.27 +1.5
55,290 - MPMX20_00056 0.27 -0.1
55,323 + MPMX20_00056 0.30 -0.3
55,400 + MPMX20_00056 0.35 -1.8

Or see this region's nucleotide sequence