Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04564

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04563 and MPMX20_04564 overlap by 4 nucleotidesMPMX20_04564 and MPMX20_04565 are separated by 109 nucleotidesMPMX20_04565 and MPMX20_04566 are separated by 27 nucleotides MPMX20_04563: MPMX20_04563 - L-Rhamnulokinase, at 4,774,702 to 4,776,171 _04563 MPMX20_04564: MPMX20_04564 - L-rhamnose isomerase, at 4,776,168 to 4,777,427 _04564 MPMX20_04565: MPMX20_04565 - Rhamnulose-1-phosphate aldolase, at 4,777,537 to 4,778,367 _04565 MPMX20_04566: MPMX20_04566 - L-rhamnose mutarotase, at 4,778,395 to 4,778,709 _04566 Position (kb) 4776 4777 4778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4775.173 kb on + strand, within MPMX20_04563at 4775.173 kb on - strand, within MPMX20_04563at 4775.200 kb on + strand, within MPMX20_04563at 4775.261 kb on - strand, within MPMX20_04563at 4775.276 kb on + strand, within MPMX20_04563at 4775.292 kb on + strand, within MPMX20_04563at 4775.300 kb on - strand, within MPMX20_04563at 4775.381 kb on - strand, within MPMX20_04563at 4775.509 kb on + strand, within MPMX20_04563at 4775.568 kb on + strand, within MPMX20_04563at 4775.615 kb on - strand, within MPMX20_04563at 4775.644 kb on - strand, within MPMX20_04563at 4775.764 kb on + strand, within MPMX20_04563at 4775.765 kb on + strand, within MPMX20_04563at 4775.839 kb on + strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.954 kb on + strand, within MPMX20_04563at 4776.020 kb on - strand, within MPMX20_04563at 4776.209 kb on + strandat 4776.217 kb on - strandat 4776.238 kb on + strandat 4776.278 kb on - strandat 4776.323 kb on - strand, within MPMX20_04564at 4776.382 kb on + strand, within MPMX20_04564at 4776.400 kb on + strand, within MPMX20_04564at 4776.407 kb on - strand, within MPMX20_04564at 4776.412 kb on + strand, within MPMX20_04564at 4776.517 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.606 kb on - strand, within MPMX20_04564at 4776.606 kb on - strand, within MPMX20_04564at 4776.643 kb on - strand, within MPMX20_04564at 4776.650 kb on + strand, within MPMX20_04564at 4776.650 kb on + strand, within MPMX20_04564at 4776.679 kb on + strand, within MPMX20_04564at 4776.680 kb on - strand, within MPMX20_04564at 4776.700 kb on - strand, within MPMX20_04564at 4776.747 kb on + strand, within MPMX20_04564at 4776.800 kb on - strand, within MPMX20_04564at 4776.838 kb on - strand, within MPMX20_04564at 4776.862 kb on - strand, within MPMX20_04564at 4776.867 kb on - strand, within MPMX20_04564at 4776.880 kb on + strand, within MPMX20_04564at 4776.880 kb on - strand, within MPMX20_04564at 4776.914 kb on - strand, within MPMX20_04564at 4776.998 kb on + strand, within MPMX20_04564at 4777.080 kb on + strand, within MPMX20_04564at 4777.209 kb on + strand, within MPMX20_04564at 4777.365 kb on - strandat 4777.441 kb on - strandat 4777.462 kb on + strandat 4777.470 kb on + strandat 4777.470 kb on + strandat 4777.470 kb on - strandat 4777.480 kb on - strandat 4777.562 kb on - strandat 4777.562 kb on - strandat 4777.572 kb on - strandat 4777.617 kb on + strandat 4777.625 kb on + strand, within MPMX20_04565at 4777.658 kb on + strand, within MPMX20_04565at 4777.666 kb on - strand, within MPMX20_04565at 4777.667 kb on - strand, within MPMX20_04565at 4777.708 kb on - strand, within MPMX20_04565at 4777.802 kb on + strand, within MPMX20_04565at 4777.810 kb on - strand, within MPMX20_04565at 4777.812 kb on + strand, within MPMX20_04565at 4777.837 kb on + strand, within MPMX20_04565at 4777.841 kb on + strand, within MPMX20_04565at 4777.841 kb on + strand, within MPMX20_04565at 4777.845 kb on - strand, within MPMX20_04565at 4777.876 kb on - strand, within MPMX20_04565at 4777.880 kb on + strand, within MPMX20_04565at 4777.880 kb on + strand, within MPMX20_04565at 4777.888 kb on - strand, within MPMX20_04565at 4777.888 kb on - strand, within MPMX20_04565at 4777.888 kb on - strand, within MPMX20_04565at 4777.899 kb on + strand, within MPMX20_04565at 4777.899 kb on + strand, within MPMX20_04565at 4777.899 kb on + strand, within MPMX20_04565at 4777.933 kb on - strand, within MPMX20_04565at 4777.951 kb on + strand, within MPMX20_04565at 4777.981 kb on + strand, within MPMX20_04565at 4777.989 kb on - strand, within MPMX20_04565at 4778.085 kb on + strand, within MPMX20_04565at 4778.116 kb on + strand, within MPMX20_04565at 4778.176 kb on + strand, within MPMX20_04565at 4778.176 kb on + strand, within MPMX20_04565at 4778.184 kb on - strand, within MPMX20_04565at 4778.184 kb on - strand, within MPMX20_04565at 4778.220 kb on - strand, within MPMX20_04565at 4778.245 kb on - strand, within MPMX20_04565at 4778.245 kb on - strand, within MPMX20_04565at 4778.281 kb on - strand, within MPMX20_04565at 4778.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,775,173 + MPMX20_04563 0.32 -1.1
4,775,173 - MPMX20_04563 0.32 +3.7
4,775,200 + MPMX20_04563 0.34 -2.4
4,775,261 - MPMX20_04563 0.38 -1.7
4,775,276 + MPMX20_04563 0.39 -3.5
4,775,292 + MPMX20_04563 0.40 -3.3
4,775,300 - MPMX20_04563 0.41 +1.7
4,775,381 - MPMX20_04563 0.46 +0.4
4,775,509 + MPMX20_04563 0.55 -0.4
4,775,568 + MPMX20_04563 0.59 -0.2
4,775,615 - MPMX20_04563 0.62 -3.9
4,775,644 - MPMX20_04563 0.64 -0.9
4,775,764 + MPMX20_04563 0.72 +1.1
4,775,765 + MPMX20_04563 0.72 -0.8
4,775,839 + MPMX20_04563 0.77 +1.9
4,775,840 - MPMX20_04563 0.77 -0.5
4,775,840 - MPMX20_04563 0.77 -0.2
4,775,840 - MPMX20_04563 0.77 -2.7
4,775,954 + MPMX20_04563 0.85 -0.2
4,776,020 - MPMX20_04563 0.90 -1.3
4,776,209 + +0.8
4,776,217 - +2.0
4,776,238 + +2.6
4,776,278 - -1.3
4,776,323 - MPMX20_04564 0.12 +2.0
4,776,382 + MPMX20_04564 0.17 +0.2
4,776,400 + MPMX20_04564 0.18 +0.5
4,776,407 - MPMX20_04564 0.19 -2.8
4,776,412 + MPMX20_04564 0.19 +1.2
4,776,517 + MPMX20_04564 0.28 -2.2
4,776,598 + MPMX20_04564 0.34 -1.7
4,776,598 + MPMX20_04564 0.34 -3.4
4,776,598 + MPMX20_04564 0.34 +1.4
4,776,606 - MPMX20_04564 0.35 +0.6
4,776,606 - MPMX20_04564 0.35 -3.2
4,776,643 - MPMX20_04564 0.38 -1.3
4,776,650 + MPMX20_04564 0.38 +0.0
4,776,650 + MPMX20_04564 0.38 +2.1
4,776,679 + MPMX20_04564 0.41 +0.8
4,776,680 - MPMX20_04564 0.41 +0.2
4,776,700 - MPMX20_04564 0.42 -3.5
4,776,747 + MPMX20_04564 0.46 -2.9
4,776,800 - MPMX20_04564 0.50 +3.1
4,776,838 - MPMX20_04564 0.53 -0.6
4,776,862 - MPMX20_04564 0.55 +1.1
4,776,867 - MPMX20_04564 0.55 +0.5
4,776,880 + MPMX20_04564 0.57 -1.0
4,776,880 - MPMX20_04564 0.57 +1.1
4,776,914 - MPMX20_04564 0.59 +2.2
4,776,998 + MPMX20_04564 0.66 +0.2
4,777,080 + MPMX20_04564 0.72 +2.7
4,777,209 + MPMX20_04564 0.83 +3.0
4,777,365 - -0.3
4,777,441 - +1.5
4,777,462 + -4.1
4,777,470 + -0.3
4,777,470 + -1.9
4,777,470 - -1.5
4,777,480 - -1.6
4,777,562 - -1.3
4,777,562 - -0.2
4,777,572 - +1.3
4,777,617 + -0.5
4,777,625 + MPMX20_04565 0.11 +0.4
4,777,658 + MPMX20_04565 0.15 -0.8
4,777,666 - MPMX20_04565 0.16 +1.1
4,777,667 - MPMX20_04565 0.16 +1.5
4,777,708 - MPMX20_04565 0.21 +0.6
4,777,802 + MPMX20_04565 0.32 +0.3
4,777,810 - MPMX20_04565 0.33 -2.2
4,777,812 + MPMX20_04565 0.33 -1.8
4,777,837 + MPMX20_04565 0.36 +2.9
4,777,841 + MPMX20_04565 0.37 +1.8
4,777,841 + MPMX20_04565 0.37 -0.2
4,777,845 - MPMX20_04565 0.37 -0.5
4,777,876 - MPMX20_04565 0.41 -0.5
4,777,880 + MPMX20_04565 0.41 -0.9
4,777,880 + MPMX20_04565 0.41 -0.7
4,777,888 - MPMX20_04565 0.42 +2.4
4,777,888 - MPMX20_04565 0.42 +0.6
4,777,888 - MPMX20_04565 0.42 -1.6
4,777,899 + MPMX20_04565 0.44 -0.8
4,777,899 + MPMX20_04565 0.44 +1.6
4,777,899 + MPMX20_04565 0.44 -0.9
4,777,933 - MPMX20_04565 0.48 -2.2
4,777,951 + MPMX20_04565 0.50 +1.5
4,777,981 + MPMX20_04565 0.53 -0.4
4,777,989 - MPMX20_04565 0.54 +0.2
4,778,085 + MPMX20_04565 0.66 -1.3
4,778,116 + MPMX20_04565 0.70 +0.3
4,778,176 + MPMX20_04565 0.77 +0.7
4,778,176 + MPMX20_04565 0.77 -2.6
4,778,184 - MPMX20_04565 0.78 +0.8
4,778,184 - MPMX20_04565 0.78 +1.9
4,778,220 - MPMX20_04565 0.82 +1.7
4,778,245 - MPMX20_04565 0.85 -3.1
4,778,245 - MPMX20_04565 0.85 +0.1
4,778,281 - MPMX20_04565 0.90 +0.0
4,778,415 - -1.3

Or see this region's nucleotide sequence