Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02533 and MPMX20_02534 are separated by 130 nucleotides MPMX20_02534 and MPMX20_02535 are separated by 38 nucleotides MPMX20_02535 and MPMX20_02536 overlap by 11 nucleotides
MPMX20_02533: MPMX20_02533 - cAMP-activated global transcriptional regulator CRP, at 2,672,715 to 2,673,380
_02533
MPMX20_02534: MPMX20_02534 - hypothetical protein, at 2,673,511 to 2,673,645
_02534
MPMX20_02535: MPMX20_02535 - Pyrimidine-specific ribonucleoside hydrolase RihB, at 2,673,684 to 2,674,649
_02535
MPMX20_02536: MPMX20_02536 - Adenosine deaminase, at 2,674,639 to 2,675,622
_02536
Position (kb)
2673
2674
2675 Strain fitness (log2 ratio)
-2
-1
0
1 at 2673.781 kb on + strand, within MPMX20_02535 at 2673.805 kb on - strand, within MPMX20_02535 at 2674.315 kb on - strand, within MPMX20_02535 at 2674.401 kb on + strand, within MPMX20_02535 at 2674.412 kb on + strand, within MPMX20_02535 at 2674.844 kb on - strand, within MPMX20_02536 at 2674.859 kb on - strand, within MPMX20_02536 at 2675.335 kb on + strand, within MPMX20_02536
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,673,781 + MPMX20_02535 0.10 +0.7 2,673,805 - MPMX20_02535 0.13 -2.7 2,674,315 - MPMX20_02535 0.65 -2.4 2,674,401 + MPMX20_02535 0.74 -2.0 2,674,412 + MPMX20_02535 0.75 -0.7 2,674,844 - MPMX20_02536 0.21 -1.1 2,674,859 - MPMX20_02536 0.22 -0.3 2,675,335 + MPMX20_02536 0.71 -0.9
Or see this region's nucleotide sequence