Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04273 and MPMX20_04274 overlap by 8 nucleotides MPMX20_04274 and MPMX20_04275 overlap by 8 nucleotides MPMX20_04275 and MPMX20_04276 are separated by 41 nucleotides MPMX20_04276 and MPMX20_04277 are separated by 67 nucleotides
MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939
_04273
MPMX20_04274: MPMX20_04274 - Phosphoglycolate phosphatase, at 4,456,932 to 4,457,693
_04274
MPMX20_04275: MPMX20_04275 - Ribulose-phosphate 3-epimerase, at 4,457,686 to 4,458,363
_04275
MPMX20_04276: MPMX20_04276 - DNA adenine methylase, at 4,458,405 to 4,459,217
_04276
MPMX20_04277: MPMX20_04277 - Cell division protein DamX, at 4,459,285 to 4,460,595
_04277
Position (kb)
4457
4458
4459 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4456.752 kb on - strand, within MPMX20_04273 at 4456.772 kb on - strand, within MPMX20_04273 at 4456.872 kb on + strand at 4456.872 kb on + strand at 4456.872 kb on + strand at 4456.880 kb on - strand at 4456.880 kb on - strand at 4456.892 kb on + strand at 4456.907 kb on - strand at 4456.924 kb on - strand at 4456.964 kb on + strand at 4457.027 kb on + strand, within MPMX20_04274 at 4457.122 kb on + strand, within MPMX20_04274 at 4457.127 kb on + strand, within MPMX20_04274 at 4457.177 kb on + strand, within MPMX20_04274 at 4457.196 kb on + strand, within MPMX20_04274 at 4457.252 kb on - strand, within MPMX20_04274 at 4457.335 kb on - strand, within MPMX20_04274 at 4457.359 kb on + strand, within MPMX20_04274 at 4457.418 kb on - strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.458 kb on + strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.590 kb on + strand, within MPMX20_04274 at 4457.590 kb on - strand, within MPMX20_04274 at 4457.590 kb on - strand, within MPMX20_04274 at 4457.606 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.624 kb on - strand at 4457.634 kb on + strand at 4457.693 kb on + strand at 4457.760 kb on - strand, within MPMX20_04275 at 4457.784 kb on - strand, within MPMX20_04275 at 4457.851 kb on + strand, within MPMX20_04275 at 4457.995 kb on - strand, within MPMX20_04275 at 4458.049 kb on + strand, within MPMX20_04275 at 4458.070 kb on - strand, within MPMX20_04275 at 4458.072 kb on + strand, within MPMX20_04275 at 4458.210 kb on + strand, within MPMX20_04275 at 4458.244 kb on - strand, within MPMX20_04275 at 4458.301 kb on + strand at 4458.309 kb on - strand at 4458.411 kb on - strand at 4458.411 kb on - strand at 4458.411 kb on - strand at 4458.502 kb on + strand, within MPMX20_04276 at 4458.521 kb on + strand, within MPMX20_04276 at 4458.529 kb on - strand, within MPMX20_04276 at 4458.600 kb on - strand, within MPMX20_04276 at 4458.619 kb on - strand, within MPMX20_04276 at 4458.627 kb on + strand, within MPMX20_04276 at 4458.654 kb on + strand, within MPMX20_04276 at 4458.682 kb on - strand, within MPMX20_04276 at 4458.719 kb on + strand, within MPMX20_04276 at 4458.775 kb on + strand, within MPMX20_04276 at 4458.820 kb on + strand, within MPMX20_04276 at 4458.839 kb on + strand, within MPMX20_04276 at 4458.849 kb on + strand, within MPMX20_04276 at 4458.872 kb on + strand, within MPMX20_04276 at 4458.883 kb on + strand, within MPMX20_04276 at 4458.891 kb on - strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.978 kb on - strand, within MPMX20_04276 at 4458.978 kb on - strand, within MPMX20_04276 at 4458.988 kb on - strand, within MPMX20_04276 at 4458.999 kb on - strand, within MPMX20_04276 at 4459.026 kb on + strand, within MPMX20_04276 at 4459.028 kb on + strand, within MPMX20_04276 at 4459.033 kb on + strand, within MPMX20_04276 at 4459.036 kb on - strand, within MPMX20_04276 at 4459.036 kb on - strand, within MPMX20_04276 at 4459.058 kb on - strand, within MPMX20_04276 at 4459.221 kb on + strand at 4459.237 kb on - strand at 4459.237 kb on - strand at 4459.298 kb on + strand at 4459.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,456,752 - MPMX20_04273 0.81 -0.6 4,456,772 - MPMX20_04273 0.83 -1.0 4,456,872 + +0.4 4,456,872 + -0.7 4,456,872 + -1.2 4,456,880 - +0.2 4,456,880 - +0.2 4,456,892 + -1.8 4,456,907 - -0.8 4,456,924 - -0.9 4,456,964 + +0.8 4,457,027 + MPMX20_04274 0.12 -0.8 4,457,122 + MPMX20_04274 0.25 -1.5 4,457,127 + MPMX20_04274 0.26 +1.1 4,457,177 + MPMX20_04274 0.32 -1.2 4,457,196 + MPMX20_04274 0.35 +3.1 4,457,252 - MPMX20_04274 0.42 +1.0 4,457,335 - MPMX20_04274 0.53 +1.3 4,457,359 + MPMX20_04274 0.56 +0.4 4,457,418 - MPMX20_04274 0.64 -1.2 4,457,457 + MPMX20_04274 0.69 +0.5 4,457,457 + MPMX20_04274 0.69 -0.3 4,457,457 + MPMX20_04274 0.69 -1.4 4,457,458 + MPMX20_04274 0.69 -1.5 4,457,466 - MPMX20_04274 0.70 +3.3 4,457,466 - MPMX20_04274 0.70 +0.6 4,457,466 - MPMX20_04274 0.70 -0.3 4,457,582 + MPMX20_04274 0.85 +0.9 4,457,582 + MPMX20_04274 0.85 -0.4 4,457,582 + MPMX20_04274 0.85 +1.1 4,457,590 + MPMX20_04274 0.86 +0.9 4,457,590 - MPMX20_04274 0.86 -1.2 4,457,590 - MPMX20_04274 0.86 -1.1 4,457,606 + MPMX20_04274 0.88 +0.6 4,457,616 + MPMX20_04274 0.90 -1.2 4,457,616 + MPMX20_04274 0.90 -0.6 4,457,616 + MPMX20_04274 0.90 -1.4 4,457,624 - -1.4 4,457,634 + -1.9 4,457,693 + -1.4 4,457,760 - MPMX20_04275 0.11 -1.3 4,457,784 - MPMX20_04275 0.14 -1.5 4,457,851 + MPMX20_04275 0.24 -0.9 4,457,995 - MPMX20_04275 0.46 -1.3 4,458,049 + MPMX20_04275 0.54 -0.9 4,458,070 - MPMX20_04275 0.57 -0.3 4,458,072 + MPMX20_04275 0.57 -0.3 4,458,210 + MPMX20_04275 0.77 -0.3 4,458,244 - MPMX20_04275 0.82 +0.8 4,458,301 + -1.9 4,458,309 - +0.1 4,458,411 - +0.1 4,458,411 - -1.8 4,458,411 - -0.0 4,458,502 + MPMX20_04276 0.12 -1.8 4,458,521 + MPMX20_04276 0.14 -1.5 4,458,529 - MPMX20_04276 0.15 +0.5 4,458,600 - MPMX20_04276 0.24 -1.2 4,458,619 - MPMX20_04276 0.26 -3.3 4,458,627 + MPMX20_04276 0.27 +0.5 4,458,654 + MPMX20_04276 0.31 -2.4 4,458,682 - MPMX20_04276 0.34 -1.5 4,458,719 + MPMX20_04276 0.39 -2.4 4,458,775 + MPMX20_04276 0.46 +0.1 4,458,820 + MPMX20_04276 0.51 -1.5 4,458,839 + MPMX20_04276 0.53 -1.7 4,458,849 + MPMX20_04276 0.55 -1.8 4,458,872 + MPMX20_04276 0.57 -1.5 4,458,883 + MPMX20_04276 0.59 -3.9 4,458,891 - MPMX20_04276 0.60 -1.2 4,458,970 + MPMX20_04276 0.69 -1.7 4,458,970 + MPMX20_04276 0.69 -0.5 4,458,970 + MPMX20_04276 0.69 -1.9 4,458,970 + MPMX20_04276 0.69 -1.8 4,458,978 - MPMX20_04276 0.70 -3.6 4,458,978 - MPMX20_04276 0.70 -2.2 4,458,988 - MPMX20_04276 0.72 -1.4 4,458,999 - MPMX20_04276 0.73 -1.7 4,459,026 + MPMX20_04276 0.76 -2.5 4,459,028 + MPMX20_04276 0.77 -2.9 4,459,033 + MPMX20_04276 0.77 -2.2 4,459,036 - MPMX20_04276 0.78 -3.3 4,459,036 - MPMX20_04276 0.78 -2.2 4,459,058 - MPMX20_04276 0.80 -0.7 4,459,221 + -3.0 4,459,237 - -0.2 4,459,237 - +1.7 4,459,298 + -3.3 4,459,306 - +0.1
Or see this region's nucleotide sequence