Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04275

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04273 and MPMX20_04274 overlap by 8 nucleotidesMPMX20_04274 and MPMX20_04275 overlap by 8 nucleotidesMPMX20_04275 and MPMX20_04276 are separated by 41 nucleotidesMPMX20_04276 and MPMX20_04277 are separated by 67 nucleotides MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939 _04273 MPMX20_04274: MPMX20_04274 - Phosphoglycolate phosphatase, at 4,456,932 to 4,457,693 _04274 MPMX20_04275: MPMX20_04275 - Ribulose-phosphate 3-epimerase, at 4,457,686 to 4,458,363 _04275 MPMX20_04276: MPMX20_04276 - DNA adenine methylase, at 4,458,405 to 4,459,217 _04276 MPMX20_04277: MPMX20_04277 - Cell division protein DamX, at 4,459,285 to 4,460,595 _04277 Position (kb) 4457 4458 4459Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4456.752 kb on - strand, within MPMX20_04273at 4456.772 kb on - strand, within MPMX20_04273at 4456.872 kb on + strandat 4456.872 kb on + strandat 4456.872 kb on + strandat 4456.880 kb on - strandat 4456.880 kb on - strandat 4456.892 kb on + strandat 4456.907 kb on - strandat 4456.924 kb on - strandat 4456.964 kb on + strandat 4457.027 kb on + strand, within MPMX20_04274at 4457.122 kb on + strand, within MPMX20_04274at 4457.127 kb on + strand, within MPMX20_04274at 4457.177 kb on + strand, within MPMX20_04274at 4457.196 kb on + strand, within MPMX20_04274at 4457.252 kb on - strand, within MPMX20_04274at 4457.335 kb on - strand, within MPMX20_04274at 4457.359 kb on + strand, within MPMX20_04274at 4457.418 kb on - strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.458 kb on + strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.590 kb on + strand, within MPMX20_04274at 4457.590 kb on - strand, within MPMX20_04274at 4457.590 kb on - strand, within MPMX20_04274at 4457.606 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.624 kb on - strandat 4457.634 kb on + strandat 4457.693 kb on + strandat 4457.760 kb on - strand, within MPMX20_04275at 4457.784 kb on - strand, within MPMX20_04275at 4457.851 kb on + strand, within MPMX20_04275at 4457.995 kb on - strand, within MPMX20_04275at 4458.049 kb on + strand, within MPMX20_04275at 4458.070 kb on - strand, within MPMX20_04275at 4458.072 kb on + strand, within MPMX20_04275at 4458.210 kb on + strand, within MPMX20_04275at 4458.244 kb on - strand, within MPMX20_04275at 4458.301 kb on + strandat 4458.309 kb on - strandat 4458.411 kb on - strandat 4458.411 kb on - strandat 4458.411 kb on - strandat 4458.502 kb on + strand, within MPMX20_04276at 4458.521 kb on + strand, within MPMX20_04276at 4458.529 kb on - strand, within MPMX20_04276at 4458.600 kb on - strand, within MPMX20_04276at 4458.619 kb on - strand, within MPMX20_04276at 4458.627 kb on + strand, within MPMX20_04276at 4458.654 kb on + strand, within MPMX20_04276at 4458.682 kb on - strand, within MPMX20_04276at 4458.719 kb on + strand, within MPMX20_04276at 4458.775 kb on + strand, within MPMX20_04276at 4458.820 kb on + strand, within MPMX20_04276at 4458.839 kb on + strand, within MPMX20_04276at 4458.849 kb on + strand, within MPMX20_04276at 4458.872 kb on + strand, within MPMX20_04276at 4458.883 kb on + strand, within MPMX20_04276at 4458.891 kb on - strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.978 kb on - strand, within MPMX20_04276at 4458.978 kb on - strand, within MPMX20_04276at 4458.988 kb on - strand, within MPMX20_04276at 4458.999 kb on - strand, within MPMX20_04276at 4459.026 kb on + strand, within MPMX20_04276at 4459.028 kb on + strand, within MPMX20_04276at 4459.033 kb on + strand, within MPMX20_04276at 4459.036 kb on - strand, within MPMX20_04276at 4459.036 kb on - strand, within MPMX20_04276at 4459.058 kb on - strand, within MPMX20_04276at 4459.221 kb on + strandat 4459.237 kb on - strandat 4459.237 kb on - strandat 4459.298 kb on + strandat 4459.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,456,752 - MPMX20_04273 0.81 -0.6
4,456,772 - MPMX20_04273 0.83 -1.0
4,456,872 + +0.4
4,456,872 + -0.7
4,456,872 + -1.2
4,456,880 - +0.2
4,456,880 - +0.2
4,456,892 + -1.8
4,456,907 - -0.8
4,456,924 - -0.9
4,456,964 + +0.8
4,457,027 + MPMX20_04274 0.12 -0.8
4,457,122 + MPMX20_04274 0.25 -1.5
4,457,127 + MPMX20_04274 0.26 +1.1
4,457,177 + MPMX20_04274 0.32 -1.2
4,457,196 + MPMX20_04274 0.35 +3.1
4,457,252 - MPMX20_04274 0.42 +1.0
4,457,335 - MPMX20_04274 0.53 +1.3
4,457,359 + MPMX20_04274 0.56 +0.4
4,457,418 - MPMX20_04274 0.64 -1.2
4,457,457 + MPMX20_04274 0.69 +0.5
4,457,457 + MPMX20_04274 0.69 -0.3
4,457,457 + MPMX20_04274 0.69 -1.4
4,457,458 + MPMX20_04274 0.69 -1.5
4,457,466 - MPMX20_04274 0.70 +3.3
4,457,466 - MPMX20_04274 0.70 +0.6
4,457,466 - MPMX20_04274 0.70 -0.3
4,457,582 + MPMX20_04274 0.85 +0.9
4,457,582 + MPMX20_04274 0.85 -0.4
4,457,582 + MPMX20_04274 0.85 +1.1
4,457,590 + MPMX20_04274 0.86 +0.9
4,457,590 - MPMX20_04274 0.86 -1.2
4,457,590 - MPMX20_04274 0.86 -1.1
4,457,606 + MPMX20_04274 0.88 +0.6
4,457,616 + MPMX20_04274 0.90 -1.2
4,457,616 + MPMX20_04274 0.90 -0.6
4,457,616 + MPMX20_04274 0.90 -1.4
4,457,624 - -1.4
4,457,634 + -1.9
4,457,693 + -1.4
4,457,760 - MPMX20_04275 0.11 -1.3
4,457,784 - MPMX20_04275 0.14 -1.5
4,457,851 + MPMX20_04275 0.24 -0.9
4,457,995 - MPMX20_04275 0.46 -1.3
4,458,049 + MPMX20_04275 0.54 -0.9
4,458,070 - MPMX20_04275 0.57 -0.3
4,458,072 + MPMX20_04275 0.57 -0.3
4,458,210 + MPMX20_04275 0.77 -0.3
4,458,244 - MPMX20_04275 0.82 +0.8
4,458,301 + -1.9
4,458,309 - +0.1
4,458,411 - +0.1
4,458,411 - -1.8
4,458,411 - -0.0
4,458,502 + MPMX20_04276 0.12 -1.8
4,458,521 + MPMX20_04276 0.14 -1.5
4,458,529 - MPMX20_04276 0.15 +0.5
4,458,600 - MPMX20_04276 0.24 -1.2
4,458,619 - MPMX20_04276 0.26 -3.3
4,458,627 + MPMX20_04276 0.27 +0.5
4,458,654 + MPMX20_04276 0.31 -2.4
4,458,682 - MPMX20_04276 0.34 -1.5
4,458,719 + MPMX20_04276 0.39 -2.4
4,458,775 + MPMX20_04276 0.46 +0.1
4,458,820 + MPMX20_04276 0.51 -1.5
4,458,839 + MPMX20_04276 0.53 -1.7
4,458,849 + MPMX20_04276 0.55 -1.8
4,458,872 + MPMX20_04276 0.57 -1.5
4,458,883 + MPMX20_04276 0.59 -3.9
4,458,891 - MPMX20_04276 0.60 -1.2
4,458,970 + MPMX20_04276 0.69 -1.7
4,458,970 + MPMX20_04276 0.69 -0.5
4,458,970 + MPMX20_04276 0.69 -1.9
4,458,970 + MPMX20_04276 0.69 -1.8
4,458,978 - MPMX20_04276 0.70 -3.6
4,458,978 - MPMX20_04276 0.70 -2.2
4,458,988 - MPMX20_04276 0.72 -1.4
4,458,999 - MPMX20_04276 0.73 -1.7
4,459,026 + MPMX20_04276 0.76 -2.5
4,459,028 + MPMX20_04276 0.77 -2.9
4,459,033 + MPMX20_04276 0.77 -2.2
4,459,036 - MPMX20_04276 0.78 -3.3
4,459,036 - MPMX20_04276 0.78 -2.2
4,459,058 - MPMX20_04276 0.80 -0.7
4,459,221 + -3.0
4,459,237 - -0.2
4,459,237 - +1.7
4,459,298 + -3.3
4,459,306 - +0.1

Or see this region's nucleotide sequence