Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04138

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04136 and MPMX20_04137 are separated by 189 nucleotidesMPMX20_04137 and MPMX20_04138 are separated by 169 nucleotidesMPMX20_04138 and MPMX20_04139 are separated by 92 nucleotides MPMX20_04136: MPMX20_04136 - Cell division protein ZapE, at 4,335,967 to 4,337,091 _04136 MPMX20_04137: MPMX20_04137 - Inner membrane protein YhcB, at 4,337,281 to 4,337,679 _04137 MPMX20_04138: MPMX20_04138 - Periplasmic pH-dependent serine endoprotease DegQ, at 4,337,849 to 4,339,216 _04138 MPMX20_04139: MPMX20_04139 - Serine endoprotease DegS, at 4,339,309 to 4,340,376 _04139 Position (kb) 4337 4338 4339 4340Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4336.866 kb on - strand, within MPMX20_04136at 4336.884 kb on + strand, within MPMX20_04136at 4336.921 kb on + strand, within MPMX20_04136at 4336.921 kb on + strand, within MPMX20_04136at 4336.926 kb on + strand, within MPMX20_04136at 4336.929 kb on - strand, within MPMX20_04136at 4336.929 kb on - strand, within MPMX20_04136at 4336.929 kb on - strand, within MPMX20_04136at 4336.948 kb on + strand, within MPMX20_04136at 4337.023 kb on - strandat 4337.036 kb on + strandat 4337.042 kb on - strandat 4337.044 kb on - strandat 4337.046 kb on + strandat 4337.046 kb on + strandat 4337.054 kb on - strandat 4337.125 kb on - strandat 4337.154 kb on + strandat 4337.154 kb on + strandat 4337.154 kb on + strandat 4337.154 kb on + strandat 4337.154 kb on + strandat 4337.154 kb on + strandat 4337.162 kb on - strandat 4337.162 kb on - strandat 4337.162 kb on - strandat 4337.162 kb on - strandat 4337.177 kb on - strandat 4337.183 kb on + strandat 4337.188 kb on - strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.229 kb on + strandat 4337.237 kb on - strandat 4337.237 kb on - strandat 4337.237 kb on - strandat 4337.237 kb on - strandat 4337.237 kb on - strandat 4337.240 kb on + strandat 4337.249 kb on - strandat 4337.256 kb on - strandat 4337.258 kb on + strandat 4337.258 kb on - strandat 4337.258 kb on - strandat 4337.266 kb on - strandat 4337.285 kb on + strandat 4337.285 kb on - strandat 4337.293 kb on - strandat 4337.345 kb on - strand, within MPMX20_04137at 4337.380 kb on + strand, within MPMX20_04137at 4337.380 kb on + strand, within MPMX20_04137at 4337.400 kb on + strand, within MPMX20_04137at 4337.408 kb on - strand, within MPMX20_04137at 4337.426 kb on + strand, within MPMX20_04137at 4337.431 kb on + strand, within MPMX20_04137at 4337.444 kb on + strand, within MPMX20_04137at 4337.497 kb on - strand, within MPMX20_04137at 4337.611 kb on + strand, within MPMX20_04137at 4337.611 kb on + strand, within MPMX20_04137at 4337.619 kb on - strand, within MPMX20_04137at 4337.709 kb on + strandat 4337.709 kb on + strandat 4337.758 kb on + strandat 4337.766 kb on - strandat 4337.768 kb on + strandat 4337.869 kb on + strandat 4337.882 kb on - strandat 4337.885 kb on - strandat 4337.889 kb on + strandat 4337.889 kb on + strandat 4337.889 kb on + strandat 4337.897 kb on - strandat 4337.950 kb on + strandat 4338.019 kb on + strand, within MPMX20_04138at 4338.027 kb on - strand, within MPMX20_04138at 4338.053 kb on + strand, within MPMX20_04138at 4338.116 kb on + strand, within MPMX20_04138at 4338.152 kb on + strand, within MPMX20_04138at 4338.161 kb on - strand, within MPMX20_04138at 4338.161 kb on - strand, within MPMX20_04138at 4338.199 kb on - strand, within MPMX20_04138at 4338.199 kb on - strand, within MPMX20_04138at 4338.201 kb on + strand, within MPMX20_04138at 4338.208 kb on + strand, within MPMX20_04138at 4338.208 kb on + strand, within MPMX20_04138at 4338.208 kb on + strand, within MPMX20_04138at 4338.216 kb on - strand, within MPMX20_04138at 4338.216 kb on - strand, within MPMX20_04138at 4338.226 kb on + strand, within MPMX20_04138at 4338.249 kb on + strand, within MPMX20_04138at 4338.259 kb on + strand, within MPMX20_04138at 4338.272 kb on + strand, within MPMX20_04138at 4338.282 kb on - strand, within MPMX20_04138at 4338.332 kb on - strand, within MPMX20_04138at 4338.380 kb on + strand, within MPMX20_04138at 4338.413 kb on - strand, within MPMX20_04138at 4338.477 kb on + strand, within MPMX20_04138at 4338.529 kb on + strand, within MPMX20_04138at 4338.562 kb on - strand, within MPMX20_04138at 4338.642 kb on + strand, within MPMX20_04138at 4338.645 kb on - strand, within MPMX20_04138at 4338.645 kb on - strand, within MPMX20_04138at 4338.703 kb on - strand, within MPMX20_04138at 4338.732 kb on + strand, within MPMX20_04138at 4338.732 kb on + strand, within MPMX20_04138at 4338.809 kb on + strand, within MPMX20_04138at 4338.817 kb on - strand, within MPMX20_04138at 4338.878 kb on + strand, within MPMX20_04138at 4338.978 kb on + strand, within MPMX20_04138at 4338.978 kb on + strand, within MPMX20_04138at 4338.986 kb on - strand, within MPMX20_04138at 4338.986 kb on - strand, within MPMX20_04138at 4338.986 kb on - strand, within MPMX20_04138at 4338.986 kb on - strand, within MPMX20_04138at 4339.029 kb on - strand, within MPMX20_04138at 4339.050 kb on + strand, within MPMX20_04138at 4339.050 kb on + strand, within MPMX20_04138at 4339.122 kb on + strandat 4339.174 kb on + strandat 4339.182 kb on - strandat 4339.204 kb on - strandat 4339.225 kb on - strandat 4339.242 kb on - strandat 4339.242 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
4,336,866 - MPMX20_04136 0.80 -3.2
4,336,884 + MPMX20_04136 0.82 -2.6
4,336,921 + MPMX20_04136 0.85 -1.9
4,336,921 + MPMX20_04136 0.85 -2.5
4,336,926 + MPMX20_04136 0.85 -2.5
4,336,929 - MPMX20_04136 0.86 -2.3
4,336,929 - MPMX20_04136 0.86 -2.3
4,336,929 - MPMX20_04136 0.86 +0.1
4,336,948 + MPMX20_04136 0.87 -2.9
4,337,023 - -3.0
4,337,036 + -2.6
4,337,042 - -2.0
4,337,044 - -3.9
4,337,046 + -0.5
4,337,046 + -2.9
4,337,054 - -1.5
4,337,125 - +1.2
4,337,154 + +0.4
4,337,154 + +1.4
4,337,154 + -0.6
4,337,154 + +0.3
4,337,154 + -0.5
4,337,154 + +0.2
4,337,162 - +0.2
4,337,162 - -0.7
4,337,162 - +1.0
4,337,162 - +1.5
4,337,177 - +0.6
4,337,183 + -1.8
4,337,188 - +1.3
4,337,229 + +0.6
4,337,229 + -0.6
4,337,229 + -0.3
4,337,229 + -0.5
4,337,229 + +0.0
4,337,229 + -2.0
4,337,229 + +0.9
4,337,229 + +0.5
4,337,229 + -0.7
4,337,229 + +0.4
4,337,229 + -0.0
4,337,229 + -0.0
4,337,229 + -1.2
4,337,229 + -1.9
4,337,237 - -3.5
4,337,237 - +0.8
4,337,237 - -1.4
4,337,237 - -1.3
4,337,237 - -1.1
4,337,240 + +0.4
4,337,249 - -0.6
4,337,256 - +1.3
4,337,258 + +0.1
4,337,258 - +0.1
4,337,258 - +0.1
4,337,266 - +2.5
4,337,285 + -3.2
4,337,285 - -0.6
4,337,293 - -0.5
4,337,345 - MPMX20_04137 0.16 +0.3
4,337,380 + MPMX20_04137 0.25 -1.7
4,337,380 + MPMX20_04137 0.25 -0.5
4,337,400 + MPMX20_04137 0.30 -1.5
4,337,408 - MPMX20_04137 0.32 +0.9
4,337,426 + MPMX20_04137 0.36 -0.7
4,337,431 + MPMX20_04137 0.38 -1.8
4,337,444 + MPMX20_04137 0.41 -0.7
4,337,497 - MPMX20_04137 0.54 -0.3
4,337,611 + MPMX20_04137 0.83 -0.7
4,337,611 + MPMX20_04137 0.83 -1.6
4,337,619 - MPMX20_04137 0.85 -2.1
4,337,709 + +1.5
4,337,709 + -0.1
4,337,758 + +0.3
4,337,766 - +0.7
4,337,768 + +0.4
4,337,869 + +0.3
4,337,882 - +1.4
4,337,885 - +0.6
4,337,889 + +0.5
4,337,889 + -0.3
4,337,889 + +0.1
4,337,897 - +0.0
4,337,950 + +1.0
4,338,019 + MPMX20_04138 0.12 -0.3
4,338,027 - MPMX20_04138 0.13 -0.9
4,338,053 + MPMX20_04138 0.15 +1.1
4,338,116 + MPMX20_04138 0.20 +1.0
4,338,152 + MPMX20_04138 0.22 +0.2
4,338,161 - MPMX20_04138 0.23 -0.2
4,338,161 - MPMX20_04138 0.23 +0.5
4,338,199 - MPMX20_04138 0.26 -0.5
4,338,199 - MPMX20_04138 0.26 +0.5
4,338,201 + MPMX20_04138 0.26 -0.1
4,338,208 + MPMX20_04138 0.26 +0.3
4,338,208 + MPMX20_04138 0.26 +1.8
4,338,208 + MPMX20_04138 0.26 -0.2
4,338,216 - MPMX20_04138 0.27 +0.6
4,338,216 - MPMX20_04138 0.27 -0.3
4,338,226 + MPMX20_04138 0.28 +0.7
4,338,249 + MPMX20_04138 0.29 +0.1
4,338,259 + MPMX20_04138 0.30 +0.4
4,338,272 + MPMX20_04138 0.31 +0.1
4,338,282 - MPMX20_04138 0.32 +0.2
4,338,332 - MPMX20_04138 0.35 +1.1
4,338,380 + MPMX20_04138 0.39 +2.1
4,338,413 - MPMX20_04138 0.41 +0.3
4,338,477 + MPMX20_04138 0.46 -1.5
4,338,529 + MPMX20_04138 0.50 +0.9
4,338,562 - MPMX20_04138 0.52 -0.3
4,338,642 + MPMX20_04138 0.58 -0.9
4,338,645 - MPMX20_04138 0.58 +0.5
4,338,645 - MPMX20_04138 0.58 -0.8
4,338,703 - MPMX20_04138 0.62 +0.3
4,338,732 + MPMX20_04138 0.65 +0.1
4,338,732 + MPMX20_04138 0.65 -2.0
4,338,809 + MPMX20_04138 0.70 +1.6
4,338,817 - MPMX20_04138 0.71 -0.1
4,338,878 + MPMX20_04138 0.75 +0.2
4,338,978 + MPMX20_04138 0.83 -0.0
4,338,978 + MPMX20_04138 0.83 +1.3
4,338,986 - MPMX20_04138 0.83 +0.8
4,338,986 - MPMX20_04138 0.83 +0.2
4,338,986 - MPMX20_04138 0.83 +1.2
4,338,986 - MPMX20_04138 0.83 -2.5
4,339,029 - MPMX20_04138 0.86 -0.1
4,339,050 + MPMX20_04138 0.88 -0.7
4,339,050 + MPMX20_04138 0.88 +0.7
4,339,122 + +0.7
4,339,174 + +0.1
4,339,182 - -0.1
4,339,204 - +0.1
4,339,225 - -0.8
4,339,242 - +0.2
4,339,242 - +0.4

Or see this region's nucleotide sequence