Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00804

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00802 and MPMX20_00803 are separated by 18 nucleotidesMPMX20_00803 and MPMX20_00804 are separated by 10 nucleotidesMPMX20_00804 and MPMX20_00805 are separated by 164 nucleotides MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012 _00802 MPMX20_00803: MPMX20_00803 - Extracellular exo-alpha-(1->5)-L-arabinofuranosidase, at 839,031 to 839,981 _00803 MPMX20_00804: MPMX20_00804 - Inner membrane symporter YicJ, at 839,992 to 841,389 _00804 MPMX20_00805: MPMX20_00805 - Aromatic amino acid transport protein AroP, at 841,554 to 842,924 _00805 Position (kb) 839 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 839.006 kb on + strandat 839.014 kb on - strandat 839.014 kb on - strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.032 kb on - strandat 839.037 kb on - strandat 839.135 kb on - strand, within MPMX20_00803at 839.142 kb on - strand, within MPMX20_00803at 839.154 kb on - strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.303 kb on + strand, within MPMX20_00803at 839.313 kb on + strand, within MPMX20_00803at 839.321 kb on - strand, within MPMX20_00803at 839.331 kb on + strand, within MPMX20_00803at 839.377 kb on - strand, within MPMX20_00803at 839.471 kb on - strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.506 kb on - strand, within MPMX20_00803at 839.523 kb on + strand, within MPMX20_00803at 839.623 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.664 kb on + strand, within MPMX20_00803at 839.693 kb on + strand, within MPMX20_00803at 839.701 kb on - strand, within MPMX20_00803at 839.703 kb on + strand, within MPMX20_00803at 839.711 kb on - strand, within MPMX20_00803at 839.714 kb on + strand, within MPMX20_00803at 839.799 kb on + strand, within MPMX20_00803at 839.828 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on - strand, within MPMX20_00803at 839.891 kb on + strandat 839.905 kb on + strandat 839.905 kb on + strandat 839.915 kb on + strandat 839.973 kb on + strandat 839.981 kb on - strandat 840.008 kb on + strandat 840.016 kb on - strandat 840.099 kb on - strandat 840.106 kb on - strandat 840.106 kb on - strandat 840.112 kb on + strandat 840.116 kb on - strandat 840.165 kb on + strand, within MPMX20_00804at 840.168 kb on - strand, within MPMX20_00804at 840.272 kb on - strand, within MPMX20_00804at 840.301 kb on + strand, within MPMX20_00804at 840.308 kb on + strand, within MPMX20_00804at 840.323 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.375 kb on - strand, within MPMX20_00804at 840.375 kb on - strand, within MPMX20_00804at 840.407 kb on + strand, within MPMX20_00804at 840.410 kb on - strand, within MPMX20_00804at 840.417 kb on + strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.530 kb on + strand, within MPMX20_00804at 840.540 kb on + strand, within MPMX20_00804at 840.567 kb on + strand, within MPMX20_00804at 840.575 kb on - strand, within MPMX20_00804at 840.577 kb on + strand, within MPMX20_00804at 840.631 kb on - strand, within MPMX20_00804at 840.662 kb on - strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.677 kb on + strand, within MPMX20_00804at 840.763 kb on + strand, within MPMX20_00804at 840.827 kb on - strand, within MPMX20_00804at 840.912 kb on - strand, within MPMX20_00804at 840.998 kb on - strand, within MPMX20_00804at 841.000 kb on - strand, within MPMX20_00804at 841.025 kb on + strand, within MPMX20_00804at 841.031 kb on - strand, within MPMX20_00804at 841.033 kb on - strand, within MPMX20_00804at 841.065 kb on - strand, within MPMX20_00804at 841.086 kb on - strand, within MPMX20_00804at 841.088 kb on + strand, within MPMX20_00804at 841.106 kb on + strand, within MPMX20_00804at 841.106 kb on + strand, within MPMX20_00804at 841.114 kb on - strand, within MPMX20_00804at 841.116 kb on + strand, within MPMX20_00804at 841.116 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.239 kb on + strand, within MPMX20_00804at 841.240 kb on - strand, within MPMX20_00804at 841.240 kb on - strand, within MPMX20_00804at 841.247 kb on - strand, within MPMX20_00804at 841.249 kb on + strand, within MPMX20_00804at 841.254 kb on + strandat 841.254 kb on + strandat 841.324 kb on + strandat 841.382 kb on - strandat 841.395 kb on + strandat 841.412 kb on - strandat 841.462 kb on - strandat 841.462 kb on - strandat 841.712 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.728 kb on - strand, within MPMX20_00805at 841.730 kb on + strand, within MPMX20_00805at 841.730 kb on + strand, within MPMX20_00805at 841.733 kb on - strand, within MPMX20_00805at 841.733 kb on - strand, within MPMX20_00805at 841.746 kb on + strand, within MPMX20_00805at 841.785 kb on - strand, within MPMX20_00805at 841.795 kb on - strand, within MPMX20_00805at 841.795 kb on - strand, within MPMX20_00805at 841.977 kb on - strand, within MPMX20_00805at 841.977 kb on - strand, within MPMX20_00805at 841.985 kb on - strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 841.997 kb on + strand, within MPMX20_00805at 842.020 kb on - strand, within MPMX20_00805at 842.039 kb on + strand, within MPMX20_00805at 842.157 kb on + strand, within MPMX20_00805at 842.229 kb on + strand, within MPMX20_00805at 842.234 kb on + strand, within MPMX20_00805at 842.234 kb on + strand, within MPMX20_00805at 842.242 kb on - strand, within MPMX20_00805at 842.273 kb on + strand, within MPMX20_00805at 842.273 kb on + strand, within MPMX20_00805at 842.344 kb on + strand, within MPMX20_00805at 842.346 kb on - strand, within MPMX20_00805at 842.372 kb on - strand, within MPMX20_00805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
839,006 + -1.0
839,014 - -0.2
839,014 - -1.2
839,024 + -0.2
839,024 + -0.5
839,024 + -0.1
839,032 - -2.2
839,037 - +1.4
839,135 - MPMX20_00803 0.11 -0.2
839,142 - MPMX20_00803 0.12 +1.2
839,154 - MPMX20_00803 0.13 +2.0
839,161 + MPMX20_00803 0.14 +0.7
839,161 + MPMX20_00803 0.14 +2.1
839,161 + MPMX20_00803 0.14 -1.9
839,169 - MPMX20_00803 0.15 +0.7
839,169 - MPMX20_00803 0.15 +0.2
839,169 - MPMX20_00803 0.15 -0.2
839,303 + MPMX20_00803 0.29 -0.1
839,313 + MPMX20_00803 0.30 -0.5
839,321 - MPMX20_00803 0.30 +2.2
839,331 + MPMX20_00803 0.32 +0.5
839,377 - MPMX20_00803 0.36 -1.7
839,471 - MPMX20_00803 0.46 -0.6
839,498 + MPMX20_00803 0.49 +0.9
839,498 + MPMX20_00803 0.49 +0.0
839,506 - MPMX20_00803 0.50 -1.0
839,523 + MPMX20_00803 0.52 -1.1
839,623 + MPMX20_00803 0.62 +1.1
839,659 + MPMX20_00803 0.66 -0.7
839,659 + MPMX20_00803 0.66 +1.4
839,664 + MPMX20_00803 0.67 +0.4
839,693 + MPMX20_00803 0.70 -0.1
839,701 - MPMX20_00803 0.70 -2.0
839,703 + MPMX20_00803 0.71 +0.4
839,711 - MPMX20_00803 0.72 -1.2
839,714 + MPMX20_00803 0.72 -0.4
839,799 + MPMX20_00803 0.81 +0.4
839,828 + MPMX20_00803 0.84 +0.4
839,846 + MPMX20_00803 0.86 +0.6
839,846 + MPMX20_00803 0.86 +2.8
839,846 - MPMX20_00803 0.86 +1.0
839,891 + -0.5
839,905 + +0.9
839,905 + +0.0
839,915 + -0.8
839,973 + -0.4
839,981 - -2.8
840,008 + -0.6
840,016 - -0.9
840,099 - +1.6
840,106 - +1.1
840,106 - -0.5
840,112 + -0.4
840,116 - -2.3
840,165 + MPMX20_00804 0.12 +0.1
840,168 - MPMX20_00804 0.13 +0.2
840,272 - MPMX20_00804 0.20 -0.1
840,301 + MPMX20_00804 0.22 -0.2
840,308 + MPMX20_00804 0.23 -0.3
840,323 + MPMX20_00804 0.24 +1.2
840,367 + MPMX20_00804 0.27 -0.2
840,367 + MPMX20_00804 0.27 -0.5
840,367 + MPMX20_00804 0.27 -0.1
840,375 - MPMX20_00804 0.27 -1.8
840,375 - MPMX20_00804 0.27 +1.5
840,407 + MPMX20_00804 0.30 -1.5
840,410 - MPMX20_00804 0.30 +1.1
840,417 + MPMX20_00804 0.30 +0.9
840,425 - MPMX20_00804 0.31 -0.5
840,425 - MPMX20_00804 0.31 -1.0
840,425 - MPMX20_00804 0.31 -0.8
840,425 - MPMX20_00804 0.31 +1.7
840,530 + MPMX20_00804 0.38 +1.3
840,540 + MPMX20_00804 0.39 -0.5
840,567 + MPMX20_00804 0.41 +1.9
840,575 - MPMX20_00804 0.42 +0.1
840,577 + MPMX20_00804 0.42 +0.2
840,631 - MPMX20_00804 0.46 -1.3
840,662 - MPMX20_00804 0.48 +1.6
840,665 + MPMX20_00804 0.48 -1.1
840,665 + MPMX20_00804 0.48 +0.5
840,677 + MPMX20_00804 0.49 +0.3
840,763 + MPMX20_00804 0.55 +1.7
840,827 - MPMX20_00804 0.60 +0.6
840,912 - MPMX20_00804 0.66 +1.5
840,998 - MPMX20_00804 0.72 +3.3
841,000 - MPMX20_00804 0.72 +0.5
841,025 + MPMX20_00804 0.74 -1.2
841,031 - MPMX20_00804 0.74 -0.9
841,033 - MPMX20_00804 0.74 +0.1
841,065 - MPMX20_00804 0.77 -2.6
841,086 - MPMX20_00804 0.78 -1.4
841,088 + MPMX20_00804 0.78 -0.0
841,106 + MPMX20_00804 0.80 +1.5
841,106 + MPMX20_00804 0.80 +1.0
841,114 - MPMX20_00804 0.80 -0.1
841,116 + MPMX20_00804 0.80 +0.3
841,116 + MPMX20_00804 0.80 -0.1
841,239 + MPMX20_00804 0.89 +1.5
841,239 + MPMX20_00804 0.89 +0.7
841,239 + MPMX20_00804 0.89 +0.4
841,239 + MPMX20_00804 0.89 +0.9
841,240 - MPMX20_00804 0.89 +0.2
841,240 - MPMX20_00804 0.89 +0.7
841,247 - MPMX20_00804 0.90 +1.9
841,249 + MPMX20_00804 0.90 +0.6
841,254 + -0.7
841,254 + -0.1
841,324 + +1.6
841,382 - -0.0
841,395 + +2.9
841,412 - -0.2
841,462 - -1.9
841,462 - -0.4
841,712 - MPMX20_00805 0.12 -0.9
841,728 - MPMX20_00805 0.13 -0.4
841,728 - MPMX20_00805 0.13 +0.8
841,728 - MPMX20_00805 0.13 +0.9
841,728 - MPMX20_00805 0.13 +0.6
841,730 + MPMX20_00805 0.13 +0.8
841,730 + MPMX20_00805 0.13 -1.1
841,733 - MPMX20_00805 0.13 -0.6
841,733 - MPMX20_00805 0.13 +0.9
841,746 + MPMX20_00805 0.14 +0.4
841,785 - MPMX20_00805 0.17 -0.9
841,795 - MPMX20_00805 0.18 -0.6
841,795 - MPMX20_00805 0.18 -0.7
841,977 - MPMX20_00805 0.31 +2.0
841,977 - MPMX20_00805 0.31 +0.9
841,985 - MPMX20_00805 0.31 -2.5
841,997 + MPMX20_00805 0.32 -0.3
841,997 + MPMX20_00805 0.32 +1.8
841,997 + MPMX20_00805 0.32 -0.1
842,020 - MPMX20_00805 0.34 +0.3
842,039 + MPMX20_00805 0.35 -0.4
842,157 + MPMX20_00805 0.44 -0.2
842,229 + MPMX20_00805 0.49 -1.6
842,234 + MPMX20_00805 0.50 -0.3
842,234 + MPMX20_00805 0.50 -0.9
842,242 - MPMX20_00805 0.50 -1.9
842,273 + MPMX20_00805 0.52 -0.1
842,273 + MPMX20_00805 0.52 +0.7
842,344 + MPMX20_00805 0.58 -0.2
842,346 - MPMX20_00805 0.58 +1.1
842,372 - MPMX20_00805 0.60 +1.1

Or see this region's nucleotide sequence