Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04562

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04560 and MPMX20_04561 are separated by 0 nucleotidesMPMX20_04561 and MPMX20_04562 are separated by 73 nucleotidesMPMX20_04562 and MPMX20_04563 are separated by 301 nucleotides MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641 _04560 MPMX20_04561: MPMX20_04561 - HTH-type transcriptional activator RhaR, at 4,772,642 to 4,773,490 _04561 MPMX20_04562: MPMX20_04562 - HTH-type transcriptional activator RhaS, at 4,773,564 to 4,774,400 _04562 MPMX20_04563: MPMX20_04563 - L-Rhamnulokinase, at 4,774,702 to 4,776,171 _04563 Position (kb) 4773 4774 4775Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4772.640 kb on + strandat 4772.707 kb on - strandat 4772.736 kb on - strand, within MPMX20_04561at 4772.791 kb on + strand, within MPMX20_04561at 4772.794 kb on - strand, within MPMX20_04561at 4772.882 kb on - strand, within MPMX20_04561at 4772.892 kb on - strand, within MPMX20_04561at 4772.916 kb on - strand, within MPMX20_04561at 4772.928 kb on - strand, within MPMX20_04561at 4772.943 kb on + strand, within MPMX20_04561at 4772.943 kb on + strand, within MPMX20_04561at 4772.951 kb on - strand, within MPMX20_04561at 4772.979 kb on + strand, within MPMX20_04561at 4772.987 kb on - strand, within MPMX20_04561at 4773.126 kb on + strand, within MPMX20_04561at 4773.249 kb on - strand, within MPMX20_04561at 4773.249 kb on - strand, within MPMX20_04561at 4773.269 kb on - strand, within MPMX20_04561at 4773.346 kb on - strand, within MPMX20_04561at 4773.359 kb on + strand, within MPMX20_04561at 4773.379 kb on + strand, within MPMX20_04561at 4773.379 kb on + strand, within MPMX20_04561at 4773.387 kb on - strand, within MPMX20_04561at 4773.472 kb on + strandat 4773.564 kb on + strandat 4773.755 kb on - strand, within MPMX20_04562at 4773.755 kb on - strand, within MPMX20_04562at 4773.842 kb on - strand, within MPMX20_04562at 4773.865 kb on - strand, within MPMX20_04562at 4773.978 kb on - strand, within MPMX20_04562at 4773.992 kb on - strand, within MPMX20_04562at 4774.012 kb on - strand, within MPMX20_04562at 4774.069 kb on + strand, within MPMX20_04562at 4774.077 kb on - strand, within MPMX20_04562at 4774.077 kb on - strand, within MPMX20_04562at 4774.103 kb on + strand, within MPMX20_04562at 4774.160 kb on + strand, within MPMX20_04562at 4774.160 kb on + strand, within MPMX20_04562at 4774.168 kb on - strand, within MPMX20_04562at 4774.183 kb on + strand, within MPMX20_04562at 4774.193 kb on + strand, within MPMX20_04562at 4774.210 kb on + strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.386 kb on + strandat 4774.386 kb on + strandat 4774.395 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.635 kb on + strandat 4774.751 kb on + strandat 4774.751 kb on + strandat 4774.759 kb on - strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.857 kb on - strand, within MPMX20_04563at 4774.865 kb on + strand, within MPMX20_04563at 4774.865 kb on + strand, within MPMX20_04563at 4774.907 kb on - strand, within MPMX20_04563at 4774.926 kb on - strand, within MPMX20_04563at 4775.029 kb on - strand, within MPMX20_04563at 4775.161 kb on - strand, within MPMX20_04563at 4775.173 kb on + strand, within MPMX20_04563at 4775.173 kb on - strand, within MPMX20_04563at 4775.200 kb on + strand, within MPMX20_04563at 4775.261 kb on - strand, within MPMX20_04563at 4775.276 kb on + strand, within MPMX20_04563at 4775.292 kb on + strand, within MPMX20_04563at 4775.300 kb on - strand, within MPMX20_04563at 4775.381 kb on - strand, within MPMX20_04563

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,772,640 + -1.5
4,772,707 - +0.4
4,772,736 - MPMX20_04561 0.11 +2.9
4,772,791 + MPMX20_04561 0.18 -0.3
4,772,794 - MPMX20_04561 0.18 +1.0
4,772,882 - MPMX20_04561 0.28 +0.6
4,772,892 - MPMX20_04561 0.29 +0.0
4,772,916 - MPMX20_04561 0.32 -0.2
4,772,928 - MPMX20_04561 0.34 -2.8
4,772,943 + MPMX20_04561 0.35 +0.5
4,772,943 + MPMX20_04561 0.35 +0.3
4,772,951 - MPMX20_04561 0.36 +0.2
4,772,979 + MPMX20_04561 0.40 +0.4
4,772,987 - MPMX20_04561 0.41 -0.1
4,773,126 + MPMX20_04561 0.57 -1.1
4,773,249 - MPMX20_04561 0.71 -2.4
4,773,249 - MPMX20_04561 0.71 -2.3
4,773,269 - MPMX20_04561 0.74 +0.6
4,773,346 - MPMX20_04561 0.83 +2.2
4,773,359 + MPMX20_04561 0.84 -0.4
4,773,379 + MPMX20_04561 0.87 +1.0
4,773,379 + MPMX20_04561 0.87 -0.1
4,773,387 - MPMX20_04561 0.88 +0.1
4,773,472 + +1.2
4,773,564 + +0.3
4,773,755 - MPMX20_04562 0.23 -0.4
4,773,755 - MPMX20_04562 0.23 -1.1
4,773,842 - MPMX20_04562 0.33 -1.0
4,773,865 - MPMX20_04562 0.36 +1.1
4,773,978 - MPMX20_04562 0.49 -1.9
4,773,992 - MPMX20_04562 0.51 -0.5
4,774,012 - MPMX20_04562 0.54 +1.0
4,774,069 + MPMX20_04562 0.60 -1.7
4,774,077 - MPMX20_04562 0.61 +0.2
4,774,077 - MPMX20_04562 0.61 -1.6
4,774,103 + MPMX20_04562 0.64 +1.2
4,774,160 + MPMX20_04562 0.71 -0.3
4,774,160 + MPMX20_04562 0.71 -0.1
4,774,168 - MPMX20_04562 0.72 -0.3
4,774,183 + MPMX20_04562 0.74 -0.3
4,774,193 + MPMX20_04562 0.75 +0.1
4,774,210 + MPMX20_04562 0.77 -0.6
4,774,242 - MPMX20_04562 0.81 -0.2
4,774,242 - MPMX20_04562 0.81 +1.3
4,774,242 - MPMX20_04562 0.81 +1.3
4,774,386 + +0.6
4,774,386 + +1.0
4,774,395 + +0.4
4,774,538 + -0.4
4,774,538 + -2.5
4,774,538 + -2.3
4,774,538 + -0.8
4,774,635 + +0.7
4,774,751 + -1.5
4,774,751 + +0.9
4,774,759 - +0.5
4,774,841 + -0.3
4,774,841 + +1.6
4,774,841 + -0.7
4,774,841 + +0.8
4,774,841 + +0.5
4,774,849 - MPMX20_04563 0.10 +0.6
4,774,849 - MPMX20_04563 0.10 -0.8
4,774,849 - MPMX20_04563 0.10 -0.0
4,774,849 - MPMX20_04563 0.10 -0.2
4,774,849 - MPMX20_04563 0.10 -0.1
4,774,849 - MPMX20_04563 0.10 +0.0
4,774,849 - MPMX20_04563 0.10 -1.1
4,774,857 - MPMX20_04563 0.11 +1.4
4,774,865 + MPMX20_04563 0.11 +1.0
4,774,865 + MPMX20_04563 0.11 +0.2
4,774,907 - MPMX20_04563 0.14 +0.6
4,774,926 - MPMX20_04563 0.15 -0.8
4,775,029 - MPMX20_04563 0.22 +0.7
4,775,161 - MPMX20_04563 0.31 -2.6
4,775,173 + MPMX20_04563 0.32 +0.2
4,775,173 - MPMX20_04563 0.32 +0.2
4,775,200 + MPMX20_04563 0.34 -0.0
4,775,261 - MPMX20_04563 0.38 +1.0
4,775,276 + MPMX20_04563 0.39 +0.5
4,775,292 + MPMX20_04563 0.40 +0.8
4,775,300 - MPMX20_04563 0.41 +0.2
4,775,381 - MPMX20_04563 0.46 +0.5

Or see this region's nucleotide sequence