Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04558 and MPMX20_04559 are separated by 70 nucleotides MPMX20_04559 and MPMX20_04560 are separated by 289 nucleotides MPMX20_04560 and MPMX20_04561 are separated by 0 nucleotides MPMX20_04561 and MPMX20_04562 are separated by 73 nucleotides
MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626
_04558
MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317
_04559
MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641
_04560
MPMX20_04561: MPMX20_04561 - HTH-type transcriptional activator RhaR, at 4,772,642 to 4,773,490
_04561
MPMX20_04562: MPMX20_04562 - HTH-type transcriptional activator RhaS, at 4,773,564 to 4,774,400
_04562
Position (kb)
4771
4772
4773 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4770.634 kb on - strand at 4770.736 kb on + strand at 4770.744 kb on - strand at 4770.820 kb on + strand, within MPMX20_04559 at 4770.928 kb on + strand, within MPMX20_04559 at 4771.035 kb on + strand, within MPMX20_04559 at 4771.058 kb on + strand, within MPMX20_04559 at 4771.096 kb on - strand, within MPMX20_04559 at 4771.104 kb on - strand, within MPMX20_04559 at 4771.134 kb on - strand, within MPMX20_04559 at 4771.207 kb on + strand, within MPMX20_04559 at 4771.216 kb on + strand, within MPMX20_04559 at 4771.226 kb on + strand, within MPMX20_04559 at 4771.297 kb on + strand at 4771.305 kb on + strand at 4771.313 kb on + strand at 4771.313 kb on - strand at 4771.313 kb on - strand at 4771.321 kb on - strand at 4771.348 kb on - strand at 4771.349 kb on + strand at 4771.350 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.529 kb on - strand at 4771.565 kb on + strand at 4771.640 kb on + strand at 4771.645 kb on + strand at 4771.690 kb on + strand at 4771.690 kb on + strand at 4771.691 kb on + strand at 4771.699 kb on - strand at 4771.709 kb on - strand at 4771.823 kb on - strand, within MPMX20_04560 at 4771.823 kb on - strand, within MPMX20_04560 at 4771.823 kb on - strand, within MPMX20_04560 at 4771.840 kb on + strand, within MPMX20_04560 at 4771.853 kb on - strand, within MPMX20_04560 at 4771.929 kb on + strand, within MPMX20_04560 at 4771.929 kb on + strand, within MPMX20_04560 at 4771.937 kb on - strand, within MPMX20_04560 at 4771.972 kb on + strand, within MPMX20_04560 at 4771.974 kb on - strand, within MPMX20_04560 at 4771.985 kb on + strand, within MPMX20_04560 at 4771.996 kb on + strand, within MPMX20_04560 at 4772.004 kb on - strand, within MPMX20_04560 at 4772.015 kb on + strand, within MPMX20_04560 at 4772.020 kb on + strand, within MPMX20_04560 at 4772.020 kb on + strand, within MPMX20_04560 at 4772.072 kb on - strand, within MPMX20_04560 at 4772.165 kb on + strand, within MPMX20_04560 at 4772.236 kb on + strand, within MPMX20_04560 at 4772.320 kb on + strand, within MPMX20_04560 at 4772.320 kb on + strand, within MPMX20_04560 at 4772.320 kb on + strand, within MPMX20_04560 at 4772.328 kb on - strand, within MPMX20_04560 at 4772.470 kb on - strand, within MPMX20_04560 at 4772.470 kb on - strand, within MPMX20_04560 at 4772.472 kb on - strand, within MPMX20_04560 at 4772.553 kb on - strand at 4772.640 kb on + strand at 4772.707 kb on - strand at 4772.736 kb on - strand, within MPMX20_04561 at 4772.791 kb on + strand, within MPMX20_04561 at 4772.794 kb on - strand, within MPMX20_04561 at 4772.882 kb on - strand, within MPMX20_04561 at 4772.892 kb on - strand, within MPMX20_04561 at 4772.916 kb on - strand, within MPMX20_04561 at 4772.928 kb on - strand, within MPMX20_04561 at 4772.943 kb on + strand, within MPMX20_04561 at 4772.943 kb on + strand, within MPMX20_04561 at 4772.951 kb on - strand, within MPMX20_04561 at 4772.979 kb on + strand, within MPMX20_04561 at 4772.987 kb on - strand, within MPMX20_04561 at 4773.126 kb on + strand, within MPMX20_04561 at 4773.249 kb on - strand, within MPMX20_04561 at 4773.249 kb on - strand, within MPMX20_04561 at 4773.269 kb on - strand, within MPMX20_04561 at 4773.346 kb on - strand, within MPMX20_04561 at 4773.359 kb on + strand, within MPMX20_04561 at 4773.379 kb on + strand, within MPMX20_04561 at 4773.379 kb on + strand, within MPMX20_04561 at 4773.387 kb on - strand, within MPMX20_04561 at 4773.472 kb on + strand at 4773.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,770,634 - +0.2 4,770,736 + -0.8 4,770,744 - -0.3 4,770,820 + MPMX20_04559 0.20 -0.1 4,770,928 + MPMX20_04559 0.37 -0.5 4,771,035 + MPMX20_04559 0.54 +1.6 4,771,058 + MPMX20_04559 0.58 -2.5 4,771,096 - MPMX20_04559 0.64 -1.3 4,771,104 - MPMX20_04559 0.66 -1.0 4,771,134 - MPMX20_04559 0.70 -2.0 4,771,207 + MPMX20_04559 0.82 -1.6 4,771,216 + MPMX20_04559 0.84 -0.1 4,771,226 + MPMX20_04559 0.85 -0.3 4,771,297 + -0.5 4,771,305 + +1.0 4,771,313 + +0.8 4,771,313 - -0.0 4,771,313 - +0.0 4,771,321 - +0.8 4,771,348 - +0.3 4,771,349 + +0.6 4,771,350 - -0.1 4,771,529 - +0.6 4,771,529 - -2.6 4,771,529 - -0.1 4,771,529 - +0.4 4,771,565 + +0.1 4,771,640 + -0.5 4,771,645 + -0.5 4,771,690 + +0.4 4,771,690 + +1.5 4,771,691 + -0.8 4,771,699 - +0.5 4,771,709 - +2.5 4,771,823 - MPMX20_04560 0.21 +0.3 4,771,823 - MPMX20_04560 0.21 -0.1 4,771,823 - MPMX20_04560 0.21 +0.4 4,771,840 + MPMX20_04560 0.23 +0.4 4,771,853 - MPMX20_04560 0.24 -2.0 4,771,929 + MPMX20_04560 0.31 -0.4 4,771,929 + MPMX20_04560 0.31 +0.2 4,771,937 - MPMX20_04560 0.32 -0.7 4,771,972 + MPMX20_04560 0.35 +0.7 4,771,974 - MPMX20_04560 0.35 -0.5 4,771,985 + MPMX20_04560 0.37 +0.4 4,771,996 + MPMX20_04560 0.38 +2.2 4,772,004 - MPMX20_04560 0.38 -1.4 4,772,015 + MPMX20_04560 0.39 +1.4 4,772,020 + MPMX20_04560 0.40 -0.4 4,772,020 + MPMX20_04560 0.40 +0.9 4,772,072 - MPMX20_04560 0.45 +0.8 4,772,165 + MPMX20_04560 0.54 -0.3 4,772,236 + MPMX20_04560 0.61 -0.3 4,772,320 + MPMX20_04560 0.69 -0.6 4,772,320 + MPMX20_04560 0.69 -1.7 4,772,320 + MPMX20_04560 0.69 +0.9 4,772,328 - MPMX20_04560 0.70 +0.2 4,772,470 - MPMX20_04560 0.83 -0.3 4,772,470 - MPMX20_04560 0.83 +0.3 4,772,472 - MPMX20_04560 0.84 +1.9 4,772,553 - +2.7 4,772,640 + -1.5 4,772,707 - +0.4 4,772,736 - MPMX20_04561 0.11 +2.9 4,772,791 + MPMX20_04561 0.18 -0.3 4,772,794 - MPMX20_04561 0.18 +1.0 4,772,882 - MPMX20_04561 0.28 +0.6 4,772,892 - MPMX20_04561 0.29 +0.0 4,772,916 - MPMX20_04561 0.32 -0.2 4,772,928 - MPMX20_04561 0.34 -2.8 4,772,943 + MPMX20_04561 0.35 +0.5 4,772,943 + MPMX20_04561 0.35 +0.3 4,772,951 - MPMX20_04561 0.36 +0.2 4,772,979 + MPMX20_04561 0.40 +0.4 4,772,987 - MPMX20_04561 0.41 -0.1 4,773,126 + MPMX20_04561 0.57 -1.1 4,773,249 - MPMX20_04561 0.71 -2.4 4,773,249 - MPMX20_04561 0.71 -2.3 4,773,269 - MPMX20_04561 0.74 +0.6 4,773,346 - MPMX20_04561 0.83 +2.2 4,773,359 + MPMX20_04561 0.84 -0.4 4,773,379 + MPMX20_04561 0.87 +1.0 4,773,379 + MPMX20_04561 0.87 -0.1 4,773,387 - MPMX20_04561 0.88 +0.1 4,773,472 + +1.2 4,773,564 + +0.3
Or see this region's nucleotide sequence