Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04560

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04558 and MPMX20_04559 are separated by 70 nucleotidesMPMX20_04559 and MPMX20_04560 are separated by 289 nucleotidesMPMX20_04560 and MPMX20_04561 are separated by 0 nucleotidesMPMX20_04561 and MPMX20_04562 are separated by 73 nucleotides MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626 _04558 MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317 _04559 MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641 _04560 MPMX20_04561: MPMX20_04561 - HTH-type transcriptional activator RhaR, at 4,772,642 to 4,773,490 _04561 MPMX20_04562: MPMX20_04562 - HTH-type transcriptional activator RhaS, at 4,773,564 to 4,774,400 _04562 Position (kb) 4771 4772 4773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4770.634 kb on - strandat 4770.736 kb on + strandat 4770.744 kb on - strandat 4770.820 kb on + strand, within MPMX20_04559at 4770.928 kb on + strand, within MPMX20_04559at 4771.035 kb on + strand, within MPMX20_04559at 4771.058 kb on + strand, within MPMX20_04559at 4771.096 kb on - strand, within MPMX20_04559at 4771.104 kb on - strand, within MPMX20_04559at 4771.134 kb on - strand, within MPMX20_04559at 4771.207 kb on + strand, within MPMX20_04559at 4771.216 kb on + strand, within MPMX20_04559at 4771.226 kb on + strand, within MPMX20_04559at 4771.297 kb on + strandat 4771.305 kb on + strandat 4771.313 kb on + strandat 4771.313 kb on - strandat 4771.313 kb on - strandat 4771.321 kb on - strandat 4771.348 kb on - strandat 4771.349 kb on + strandat 4771.350 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.565 kb on + strandat 4771.640 kb on + strandat 4771.645 kb on + strandat 4771.690 kb on + strandat 4771.690 kb on + strandat 4771.691 kb on + strandat 4771.699 kb on - strandat 4771.709 kb on - strandat 4771.823 kb on - strand, within MPMX20_04560at 4771.823 kb on - strand, within MPMX20_04560at 4771.823 kb on - strand, within MPMX20_04560at 4771.840 kb on + strand, within MPMX20_04560at 4771.853 kb on - strand, within MPMX20_04560at 4771.929 kb on + strand, within MPMX20_04560at 4771.929 kb on + strand, within MPMX20_04560at 4771.937 kb on - strand, within MPMX20_04560at 4771.972 kb on + strand, within MPMX20_04560at 4771.974 kb on - strand, within MPMX20_04560at 4771.985 kb on + strand, within MPMX20_04560at 4771.996 kb on + strand, within MPMX20_04560at 4772.004 kb on - strand, within MPMX20_04560at 4772.015 kb on + strand, within MPMX20_04560at 4772.020 kb on + strand, within MPMX20_04560at 4772.020 kb on + strand, within MPMX20_04560at 4772.072 kb on - strand, within MPMX20_04560at 4772.165 kb on + strand, within MPMX20_04560at 4772.236 kb on + strand, within MPMX20_04560at 4772.320 kb on + strand, within MPMX20_04560at 4772.320 kb on + strand, within MPMX20_04560at 4772.320 kb on + strand, within MPMX20_04560at 4772.328 kb on - strand, within MPMX20_04560at 4772.470 kb on - strand, within MPMX20_04560at 4772.470 kb on - strand, within MPMX20_04560at 4772.472 kb on - strand, within MPMX20_04560at 4772.553 kb on - strandat 4772.640 kb on + strandat 4772.707 kb on - strandat 4772.736 kb on - strand, within MPMX20_04561at 4772.791 kb on + strand, within MPMX20_04561at 4772.794 kb on - strand, within MPMX20_04561at 4772.882 kb on - strand, within MPMX20_04561at 4772.892 kb on - strand, within MPMX20_04561at 4772.916 kb on - strand, within MPMX20_04561at 4772.928 kb on - strand, within MPMX20_04561at 4772.943 kb on + strand, within MPMX20_04561at 4772.943 kb on + strand, within MPMX20_04561at 4772.951 kb on - strand, within MPMX20_04561at 4772.979 kb on + strand, within MPMX20_04561at 4772.987 kb on - strand, within MPMX20_04561at 4773.126 kb on + strand, within MPMX20_04561at 4773.249 kb on - strand, within MPMX20_04561at 4773.249 kb on - strand, within MPMX20_04561at 4773.269 kb on - strand, within MPMX20_04561at 4773.346 kb on - strand, within MPMX20_04561at 4773.359 kb on + strand, within MPMX20_04561at 4773.379 kb on + strand, within MPMX20_04561at 4773.379 kb on + strand, within MPMX20_04561at 4773.387 kb on - strand, within MPMX20_04561at 4773.472 kb on + strandat 4773.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,770,634 - +0.2
4,770,736 + -0.8
4,770,744 - -0.3
4,770,820 + MPMX20_04559 0.20 -0.1
4,770,928 + MPMX20_04559 0.37 -0.5
4,771,035 + MPMX20_04559 0.54 +1.6
4,771,058 + MPMX20_04559 0.58 -2.5
4,771,096 - MPMX20_04559 0.64 -1.3
4,771,104 - MPMX20_04559 0.66 -1.0
4,771,134 - MPMX20_04559 0.70 -2.0
4,771,207 + MPMX20_04559 0.82 -1.6
4,771,216 + MPMX20_04559 0.84 -0.1
4,771,226 + MPMX20_04559 0.85 -0.3
4,771,297 + -0.5
4,771,305 + +1.0
4,771,313 + +0.8
4,771,313 - -0.0
4,771,313 - +0.0
4,771,321 - +0.8
4,771,348 - +0.3
4,771,349 + +0.6
4,771,350 - -0.1
4,771,529 - +0.6
4,771,529 - -2.6
4,771,529 - -0.1
4,771,529 - +0.4
4,771,565 + +0.1
4,771,640 + -0.5
4,771,645 + -0.5
4,771,690 + +0.4
4,771,690 + +1.5
4,771,691 + -0.8
4,771,699 - +0.5
4,771,709 - +2.5
4,771,823 - MPMX20_04560 0.21 +0.3
4,771,823 - MPMX20_04560 0.21 -0.1
4,771,823 - MPMX20_04560 0.21 +0.4
4,771,840 + MPMX20_04560 0.23 +0.4
4,771,853 - MPMX20_04560 0.24 -2.0
4,771,929 + MPMX20_04560 0.31 -0.4
4,771,929 + MPMX20_04560 0.31 +0.2
4,771,937 - MPMX20_04560 0.32 -0.7
4,771,972 + MPMX20_04560 0.35 +0.7
4,771,974 - MPMX20_04560 0.35 -0.5
4,771,985 + MPMX20_04560 0.37 +0.4
4,771,996 + MPMX20_04560 0.38 +2.2
4,772,004 - MPMX20_04560 0.38 -1.4
4,772,015 + MPMX20_04560 0.39 +1.4
4,772,020 + MPMX20_04560 0.40 -0.4
4,772,020 + MPMX20_04560 0.40 +0.9
4,772,072 - MPMX20_04560 0.45 +0.8
4,772,165 + MPMX20_04560 0.54 -0.3
4,772,236 + MPMX20_04560 0.61 -0.3
4,772,320 + MPMX20_04560 0.69 -0.6
4,772,320 + MPMX20_04560 0.69 -1.7
4,772,320 + MPMX20_04560 0.69 +0.9
4,772,328 - MPMX20_04560 0.70 +0.2
4,772,470 - MPMX20_04560 0.83 -0.3
4,772,470 - MPMX20_04560 0.83 +0.3
4,772,472 - MPMX20_04560 0.84 +1.9
4,772,553 - +2.7
4,772,640 + -1.5
4,772,707 - +0.4
4,772,736 - MPMX20_04561 0.11 +2.9
4,772,791 + MPMX20_04561 0.18 -0.3
4,772,794 - MPMX20_04561 0.18 +1.0
4,772,882 - MPMX20_04561 0.28 +0.6
4,772,892 - MPMX20_04561 0.29 +0.0
4,772,916 - MPMX20_04561 0.32 -0.2
4,772,928 - MPMX20_04561 0.34 -2.8
4,772,943 + MPMX20_04561 0.35 +0.5
4,772,943 + MPMX20_04561 0.35 +0.3
4,772,951 - MPMX20_04561 0.36 +0.2
4,772,979 + MPMX20_04561 0.40 +0.4
4,772,987 - MPMX20_04561 0.41 -0.1
4,773,126 + MPMX20_04561 0.57 -1.1
4,773,249 - MPMX20_04561 0.71 -2.4
4,773,249 - MPMX20_04561 0.71 -2.3
4,773,269 - MPMX20_04561 0.74 +0.6
4,773,346 - MPMX20_04561 0.83 +2.2
4,773,359 + MPMX20_04561 0.84 -0.4
4,773,379 + MPMX20_04561 0.87 +1.0
4,773,379 + MPMX20_04561 0.87 -0.1
4,773,387 - MPMX20_04561 0.88 +0.1
4,773,472 + +1.2
4,773,564 + +0.3

Or see this region's nucleotide sequence