Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02781

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02780 and MPMX20_02781 are separated by 4 nucleotidesMPMX20_02781 and MPMX20_02782 are separated by 264 nucleotidesMPMX20_02782 and MPMX20_02783 overlap by 1 nucleotides MPMX20_02780: MPMX20_02780 - Unsaturated rhamnogalacturonyl hydrolase YesR, at 2,934,371 to 2,935,510 _02780 MPMX20_02781: MPMX20_02781 - Putative glycoside/cation symporter YagG, at 2,935,515 to 2,937,098 _02781 MPMX20_02782: MPMX20_02782 - Flagellar protein FlhE, at 2,937,363 to 2,937,755 _02782 MPMX20_02783: MPMX20_02783 - Flagellar biosynthesis protein FlhA, at 2,937,755 to 2,939,833 _02783 Position (kb) 2935 2936 2937 2938Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2934.559 kb on + strand, within MPMX20_02780at 2934.578 kb on + strand, within MPMX20_02780at 2934.586 kb on - strand, within MPMX20_02780at 2934.642 kb on + strand, within MPMX20_02780at 2934.650 kb on - strand, within MPMX20_02780at 2934.667 kb on + strand, within MPMX20_02780at 2934.667 kb on + strand, within MPMX20_02780at 2934.741 kb on - strand, within MPMX20_02780at 2934.820 kb on - strand, within MPMX20_02780at 2934.926 kb on + strand, within MPMX20_02780at 2934.940 kb on + strand, within MPMX20_02780at 2935.045 kb on + strand, within MPMX20_02780at 2935.097 kb on - strand, within MPMX20_02780at 2935.155 kb on + strand, within MPMX20_02780at 2935.177 kb on + strand, within MPMX20_02780at 2935.215 kb on - strand, within MPMX20_02780at 2935.273 kb on + strand, within MPMX20_02780at 2935.283 kb on - strand, within MPMX20_02780at 2935.293 kb on + strand, within MPMX20_02780at 2935.301 kb on - strand, within MPMX20_02780at 2935.301 kb on - strand, within MPMX20_02780at 2935.301 kb on - strand, within MPMX20_02780at 2935.303 kb on - strand, within MPMX20_02780at 2935.303 kb on - strand, within MPMX20_02780at 2935.319 kb on + strand, within MPMX20_02780at 2935.327 kb on - strand, within MPMX20_02780at 2935.343 kb on - strand, within MPMX20_02780at 2935.391 kb on + strand, within MPMX20_02780at 2935.394 kb on - strand, within MPMX20_02780at 2935.485 kb on - strandat 2935.485 kb on - strandat 2935.487 kb on + strandat 2935.487 kb on + strandat 2935.487 kb on + strandat 2935.495 kb on - strandat 2935.495 kb on - strandat 2935.495 kb on - strandat 2935.520 kb on - strandat 2935.520 kb on - strandat 2935.557 kb on - strandat 2935.567 kb on + strandat 2935.609 kb on + strandat 2935.652 kb on - strandat 2935.659 kb on + strandat 2935.667 kb on - strandat 2935.667 kb on - strandat 2935.731 kb on + strand, within MPMX20_02781at 2935.751 kb on + strand, within MPMX20_02781at 2935.817 kb on + strand, within MPMX20_02781at 2935.833 kb on + strand, within MPMX20_02781at 2935.965 kb on + strand, within MPMX20_02781at 2936.012 kb on - strand, within MPMX20_02781at 2936.012 kb on - strand, within MPMX20_02781at 2936.099 kb on - strand, within MPMX20_02781at 2936.101 kb on + strand, within MPMX20_02781at 2936.101 kb on + strand, within MPMX20_02781at 2936.101 kb on + strand, within MPMX20_02781at 2936.109 kb on - strand, within MPMX20_02781at 2936.114 kb on - strand, within MPMX20_02781at 2936.116 kb on + strand, within MPMX20_02781at 2936.134 kb on + strand, within MPMX20_02781at 2936.246 kb on + strand, within MPMX20_02781at 2936.246 kb on + strand, within MPMX20_02781at 2936.378 kb on + strand, within MPMX20_02781at 2936.380 kb on + strand, within MPMX20_02781at 2936.391 kb on - strand, within MPMX20_02781at 2936.464 kb on - strand, within MPMX20_02781at 2936.500 kb on + strand, within MPMX20_02781at 2936.531 kb on + strand, within MPMX20_02781at 2936.531 kb on + strand, within MPMX20_02781at 2936.537 kb on - strand, within MPMX20_02781at 2936.539 kb on - strand, within MPMX20_02781at 2936.544 kb on - strand, within MPMX20_02781at 2936.544 kb on - strand, within MPMX20_02781at 2936.549 kb on - strand, within MPMX20_02781at 2936.616 kb on + strand, within MPMX20_02781at 2936.664 kb on - strand, within MPMX20_02781at 2936.705 kb on + strand, within MPMX20_02781at 2936.757 kb on + strand, within MPMX20_02781at 2936.786 kb on + strand, within MPMX20_02781at 2936.973 kb on - strandat 2936.975 kb on + strandat 2937.102 kb on + strandat 2937.110 kb on - strandat 2937.110 kb on - strandat 2937.115 kb on - strandat 2937.115 kb on - strandat 2937.131 kb on + strandat 2937.136 kb on + strandat 2937.179 kb on - strandat 2937.187 kb on - strandat 2937.247 kb on + strandat 2937.404 kb on + strand, within MPMX20_02782at 2937.409 kb on + strand, within MPMX20_02782at 2937.411 kb on + strand, within MPMX20_02782at 2937.417 kb on - strand, within MPMX20_02782at 2937.419 kb on - strand, within MPMX20_02782at 2937.480 kb on + strand, within MPMX20_02782at 2937.498 kb on - strand, within MPMX20_02782at 2937.537 kb on - strand, within MPMX20_02782at 2937.542 kb on + strand, within MPMX20_02782at 2937.579 kb on + strand, within MPMX20_02782at 2937.587 kb on + strand, within MPMX20_02782at 2937.596 kb on - strand, within MPMX20_02782at 2937.619 kb on + strand, within MPMX20_02782at 2937.623 kb on + strand, within MPMX20_02782at 2937.673 kb on - strand, within MPMX20_02782at 2937.674 kb on - strand, within MPMX20_02782at 2937.801 kb on + strandat 2937.841 kb on - strandat 2937.931 kb on + strandat 2937.969 kb on + strand, within MPMX20_02783at 2937.969 kb on + strand, within MPMX20_02783at 2937.972 kb on - strand, within MPMX20_02783at 2937.977 kb on - strand, within MPMX20_02783at 2937.977 kb on - strand, within MPMX20_02783at 2938.045 kb on - strand, within MPMX20_02783at 2938.085 kb on + strand, within MPMX20_02783

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,934,559 + MPMX20_02780 0.16 -1.1
2,934,578 + MPMX20_02780 0.18 -1.0
2,934,586 - MPMX20_02780 0.19 +1.8
2,934,642 + MPMX20_02780 0.24 +0.5
2,934,650 - MPMX20_02780 0.24 +0.2
2,934,667 + MPMX20_02780 0.26 +1.0
2,934,667 + MPMX20_02780 0.26 +1.3
2,934,741 - MPMX20_02780 0.32 -1.8
2,934,820 - MPMX20_02780 0.39 +0.5
2,934,926 + MPMX20_02780 0.49 +0.0
2,934,940 + MPMX20_02780 0.50 +1.1
2,935,045 + MPMX20_02780 0.59 -0.4
2,935,097 - MPMX20_02780 0.64 +0.9
2,935,155 + MPMX20_02780 0.69 +0.0
2,935,177 + MPMX20_02780 0.71 -0.9
2,935,215 - MPMX20_02780 0.74 -0.2
2,935,273 + MPMX20_02780 0.79 -0.3
2,935,283 - MPMX20_02780 0.80 -2.6
2,935,293 + MPMX20_02780 0.81 -0.1
2,935,301 - MPMX20_02780 0.82 -1.6
2,935,301 - MPMX20_02780 0.82 +2.4
2,935,301 - MPMX20_02780 0.82 +0.1
2,935,303 - MPMX20_02780 0.82 -1.1
2,935,303 - MPMX20_02780 0.82 +0.2
2,935,319 + MPMX20_02780 0.83 -0.5
2,935,327 - MPMX20_02780 0.84 -0.1
2,935,343 - MPMX20_02780 0.85 -0.4
2,935,391 + MPMX20_02780 0.89 -0.4
2,935,394 - MPMX20_02780 0.90 +0.0
2,935,485 - -0.3
2,935,485 - +0.3
2,935,487 + +1.3
2,935,487 + +0.0
2,935,487 + -0.7
2,935,495 - +1.6
2,935,495 - +1.7
2,935,495 - -1.8
2,935,520 - -0.2
2,935,520 - +0.5
2,935,557 - -0.4
2,935,567 + -0.1
2,935,609 + +3.8
2,935,652 - -2.4
2,935,659 + -0.4
2,935,667 - -1.4
2,935,667 - +1.5
2,935,731 + MPMX20_02781 0.14 -1.8
2,935,751 + MPMX20_02781 0.15 -0.8
2,935,817 + MPMX20_02781 0.19 -0.6
2,935,833 + MPMX20_02781 0.20 -0.8
2,935,965 + MPMX20_02781 0.28 -0.8
2,936,012 - MPMX20_02781 0.31 -1.4
2,936,012 - MPMX20_02781 0.31 +0.8
2,936,099 - MPMX20_02781 0.37 +0.4
2,936,101 + MPMX20_02781 0.37 -1.3
2,936,101 + MPMX20_02781 0.37 -1.4
2,936,101 + MPMX20_02781 0.37 +0.5
2,936,109 - MPMX20_02781 0.38 +0.2
2,936,114 - MPMX20_02781 0.38 -1.1
2,936,116 + MPMX20_02781 0.38 +2.3
2,936,134 + MPMX20_02781 0.39 -0.0
2,936,246 + MPMX20_02781 0.46 -0.4
2,936,246 + MPMX20_02781 0.46 -1.6
2,936,378 + MPMX20_02781 0.54 -1.1
2,936,380 + MPMX20_02781 0.55 +0.2
2,936,391 - MPMX20_02781 0.55 -1.1
2,936,464 - MPMX20_02781 0.60 +1.0
2,936,500 + MPMX20_02781 0.62 +0.6
2,936,531 + MPMX20_02781 0.64 +1.4
2,936,531 + MPMX20_02781 0.64 +1.3
2,936,537 - MPMX20_02781 0.65 +1.7
2,936,539 - MPMX20_02781 0.65 +1.0
2,936,544 - MPMX20_02781 0.65 -2.4
2,936,544 - MPMX20_02781 0.65 +0.6
2,936,549 - MPMX20_02781 0.65 +1.6
2,936,616 + MPMX20_02781 0.70 -0.3
2,936,664 - MPMX20_02781 0.73 +0.3
2,936,705 + MPMX20_02781 0.75 +1.7
2,936,757 + MPMX20_02781 0.78 -0.8
2,936,786 + MPMX20_02781 0.80 -1.3
2,936,973 - -0.0
2,936,975 + -0.6
2,937,102 + -1.5
2,937,110 - -1.9
2,937,110 - -3.1
2,937,115 - -1.1
2,937,115 - +0.5
2,937,131 + +1.9
2,937,136 + -2.7
2,937,179 - -1.0
2,937,187 - +0.2
2,937,247 + -0.4
2,937,404 + MPMX20_02782 0.10 +2.3
2,937,409 + MPMX20_02782 0.12 -0.8
2,937,411 + MPMX20_02782 0.12 -1.4
2,937,417 - MPMX20_02782 0.14 -1.4
2,937,419 - MPMX20_02782 0.14 +2.2
2,937,480 + MPMX20_02782 0.30 -1.1
2,937,498 - MPMX20_02782 0.34 +1.2
2,937,537 - MPMX20_02782 0.44 -1.5
2,937,542 + MPMX20_02782 0.46 +0.6
2,937,579 + MPMX20_02782 0.55 +2.2
2,937,587 + MPMX20_02782 0.57 +0.4
2,937,596 - MPMX20_02782 0.59 -2.0
2,937,619 + MPMX20_02782 0.65 +0.3
2,937,623 + MPMX20_02782 0.66 -0.8
2,937,673 - MPMX20_02782 0.79 +0.9
2,937,674 - MPMX20_02782 0.79 -0.3
2,937,801 + -0.4
2,937,841 - +1.2
2,937,931 + -0.7
2,937,969 + MPMX20_02783 0.10 -0.0
2,937,969 + MPMX20_02783 0.10 -0.8
2,937,972 - MPMX20_02783 0.10 -0.1
2,937,977 - MPMX20_02783 0.11 -1.2
2,937,977 - MPMX20_02783 0.11 -0.1
2,938,045 - MPMX20_02783 0.14 -1.1
2,938,085 + MPMX20_02783 0.16 -1.1

Or see this region's nucleotide sequence