Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00131

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00129 and MPMX20_00130 overlap by 4 nucleotidesMPMX20_00130 and MPMX20_00131 overlap by 4 nucleotidesMPMX20_00131 and MPMX20_00132 are separated by 285 nucleotidesMPMX20_00132 and MPMX20_00133 are separated by 58 nucleotides MPMX20_00129: MPMX20_00129 - L-lactate dehydrogenase, at 129,829 to 131,016 _00129 MPMX20_00130: MPMX20_00130 - Putative L-lactate dehydrogenase operon regulatory protein, at 131,013 to 131,786 _00130 MPMX20_00131: MPMX20_00131 - L-lactate permease, at 131,783 to 133,438 _00131 MPMX20_00132: MPMX20_00132 - putative protein YibL, at 133,724 to 134,086 _00132 MPMX20_00133: MPMX20_00133 - Mannitol operon repressor, at 134,145 to 134,735 _00133 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.832 kb on + strand, within MPMX20_00129at 130.841 kb on - strand, within MPMX20_00129at 130.853 kb on - strand, within MPMX20_00129at 130.904 kb on + strandat 130.914 kb on + strandat 130.922 kb on - strandat 130.933 kb on - strandat 131.025 kb on - strandat 131.104 kb on - strand, within MPMX20_00130at 131.112 kb on + strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.230 kb on - strand, within MPMX20_00130at 131.236 kb on - strand, within MPMX20_00130at 131.268 kb on - strand, within MPMX20_00130at 131.270 kb on + strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.346 kb on - strand, within MPMX20_00130at 131.359 kb on - strand, within MPMX20_00130at 131.376 kb on + strand, within MPMX20_00130at 131.384 kb on - strand, within MPMX20_00130at 131.395 kb on - strand, within MPMX20_00130at 131.397 kb on + strand, within MPMX20_00130at 131.501 kb on - strand, within MPMX20_00130at 131.549 kb on - strand, within MPMX20_00130at 131.554 kb on - strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.589 kb on + strand, within MPMX20_00130at 131.603 kb on + strand, within MPMX20_00130at 131.614 kb on - strand, within MPMX20_00130at 131.619 kb on + strand, within MPMX20_00130at 131.663 kb on - strand, within MPMX20_00130at 131.773 kb on - strandat 131.798 kb on + strandat 131.818 kb on - strandat 131.818 kb on - strandat 131.820 kb on + strandat 131.828 kb on - strandat 131.843 kb on + strandat 131.843 kb on + strandat 131.851 kb on - strandat 131.856 kb on - strandat 131.879 kb on - strandat 131.882 kb on + strandat 131.892 kb on + strandat 131.918 kb on + strandat 132.016 kb on - strand, within MPMX20_00131at 132.086 kb on - strand, within MPMX20_00131at 132.134 kb on - strand, within MPMX20_00131at 132.148 kb on + strand, within MPMX20_00131at 132.150 kb on + strand, within MPMX20_00131at 132.158 kb on - strand, within MPMX20_00131at 132.160 kb on + strand, within MPMX20_00131at 132.168 kb on - strand, within MPMX20_00131at 132.168 kb on - strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.188 kb on + strand, within MPMX20_00131at 132.196 kb on - strand, within MPMX20_00131at 132.221 kb on + strand, within MPMX20_00131at 132.237 kb on - strand, within MPMX20_00131at 132.237 kb on - strand, within MPMX20_00131at 132.248 kb on + strand, within MPMX20_00131at 132.248 kb on + strand, within MPMX20_00131at 132.267 kb on + strand, within MPMX20_00131at 132.267 kb on + strand, within MPMX20_00131at 132.296 kb on - strand, within MPMX20_00131at 132.310 kb on + strand, within MPMX20_00131at 132.310 kb on + strand, within MPMX20_00131at 132.350 kb on - strand, within MPMX20_00131at 132.371 kb on + strand, within MPMX20_00131at 132.428 kb on + strand, within MPMX20_00131at 132.440 kb on + strand, within MPMX20_00131at 132.448 kb on - strand, within MPMX20_00131at 132.471 kb on + strand, within MPMX20_00131at 132.472 kb on - strand, within MPMX20_00131at 132.568 kb on + strand, within MPMX20_00131at 132.583 kb on - strand, within MPMX20_00131at 132.607 kb on - strand, within MPMX20_00131at 132.649 kb on + strand, within MPMX20_00131at 132.654 kb on + strand, within MPMX20_00131at 132.657 kb on - strand, within MPMX20_00131at 132.657 kb on - strand, within MPMX20_00131at 132.727 kb on + strand, within MPMX20_00131at 132.783 kb on - strand, within MPMX20_00131at 132.810 kb on + strand, within MPMX20_00131at 132.818 kb on - strand, within MPMX20_00131at 132.818 kb on - strand, within MPMX20_00131at 132.818 kb on - strand, within MPMX20_00131at 132.876 kb on - strand, within MPMX20_00131at 132.876 kb on - strand, within MPMX20_00131at 132.878 kb on + strand, within MPMX20_00131at 132.878 kb on + strand, within MPMX20_00131at 132.878 kb on + strand, within MPMX20_00131at 132.886 kb on - strand, within MPMX20_00131at 132.886 kb on - strand, within MPMX20_00131at 132.886 kb on - strand, within MPMX20_00131at 132.955 kb on - strand, within MPMX20_00131at 132.964 kb on + strand, within MPMX20_00131at 132.964 kb on + strand, within MPMX20_00131at 133.022 kb on - strand, within MPMX20_00131at 133.060 kb on + strand, within MPMX20_00131at 133.204 kb on + strand, within MPMX20_00131at 133.224 kb on + strand, within MPMX20_00131at 133.233 kb on + strand, within MPMX20_00131at 133.241 kb on - strand, within MPMX20_00131at 133.251 kb on - strand, within MPMX20_00131at 133.337 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.405 kb on - strandat 133.432 kb on + strandat 133.460 kb on - strandat 133.491 kb on - strandat 133.637 kb on + strandat 133.678 kb on - strandat 133.791 kb on + strand, within MPMX20_00132at 133.870 kb on + strand, within MPMX20_00132at 133.918 kb on - strand, within MPMX20_00132at 134.030 kb on + strand, within MPMX20_00132at 134.043 kb on - strand, within MPMX20_00132at 134.123 kb on + strandat 134.123 kb on + strandat 134.123 kb on + strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.135 kb on - strandat 134.256 kb on - strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.284 kb on + strand, within MPMX20_00133at 134.307 kb on + strand, within MPMX20_00133at 134.315 kb on - strand, within MPMX20_00133at 134.331 kb on + strand, within MPMX20_00133at 134.344 kb on + strand, within MPMX20_00133at 134.349 kb on + strand, within MPMX20_00133at 134.350 kb on - strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.397 kb on - strand, within MPMX20_00133at 134.432 kb on + strand, within MPMX20_00133

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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130,832 + MPMX20_00129 0.84 -0.9
130,841 - MPMX20_00129 0.85 -0.4
130,853 - MPMX20_00129 0.86 -2.3
130,904 + -1.5
130,914 + -1.6
130,922 - -0.5
130,933 - -0.6
131,025 - -0.5
131,104 - MPMX20_00130 0.12 -1.9
131,112 + MPMX20_00130 0.13 -1.9
131,126 - MPMX20_00130 0.15 -1.4
131,126 - MPMX20_00130 0.15 -0.9
131,230 - MPMX20_00130 0.28 -1.3
131,236 - MPMX20_00130 0.29 -1.6
131,268 - MPMX20_00130 0.33 -0.3
131,270 + MPMX20_00130 0.33 -1.9
131,298 - MPMX20_00130 0.37 +0.8
131,298 - MPMX20_00130 0.37 -0.8
131,298 - MPMX20_00130 0.37 -1.6
131,346 - MPMX20_00130 0.43 -1.8
131,359 - MPMX20_00130 0.45 +0.2
131,376 + MPMX20_00130 0.47 -0.4
131,384 - MPMX20_00130 0.48 -3.5
131,395 - MPMX20_00130 0.49 -1.5
131,397 + MPMX20_00130 0.50 -0.5
131,501 - MPMX20_00130 0.63 -0.9
131,549 - MPMX20_00130 0.69 -1.0
131,554 - MPMX20_00130 0.70 +1.7
131,556 + MPMX20_00130 0.70 -1.6
131,556 + MPMX20_00130 0.70 -0.3
131,589 + MPMX20_00130 0.74 -2.0
131,603 + MPMX20_00130 0.76 -0.7
131,614 - MPMX20_00130 0.78 -0.9
131,619 + MPMX20_00130 0.78 -1.6
131,663 - MPMX20_00130 0.84 -3.1
131,773 - -1.2
131,798 + -0.3
131,818 - -1.9
131,818 - -0.7
131,820 + -1.3
131,828 - -1.1
131,843 + +0.2
131,843 + -0.3
131,851 - -0.9
131,856 - -2.6
131,879 - +0.0
131,882 + -3.0
131,892 + -0.5
131,918 + +2.8
132,016 - MPMX20_00131 0.14 -0.8
132,086 - MPMX20_00131 0.18 -1.0
132,134 - MPMX20_00131 0.21 +0.0
132,148 + MPMX20_00131 0.22 -1.8
132,150 + MPMX20_00131 0.22 -0.4
132,158 - MPMX20_00131 0.23 -0.0
132,160 + MPMX20_00131 0.23 -1.7
132,168 - MPMX20_00131 0.23 -1.1
132,168 - MPMX20_00131 0.23 -2.0
132,188 + MPMX20_00131 0.24 -1.5
132,188 + MPMX20_00131 0.24 +1.7
132,188 + MPMX20_00131 0.24 +0.0
132,196 - MPMX20_00131 0.25 -1.4
132,221 + MPMX20_00131 0.26 -0.2
132,237 - MPMX20_00131 0.27 -2.2
132,237 - MPMX20_00131 0.27 -1.7
132,248 + MPMX20_00131 0.28 -0.3
132,248 + MPMX20_00131 0.28 -2.1
132,267 + MPMX20_00131 0.29 -0.3
132,267 + MPMX20_00131 0.29 -1.8
132,296 - MPMX20_00131 0.31 -0.8
132,310 + MPMX20_00131 0.32 -1.3
132,310 + MPMX20_00131 0.32 +0.3
132,350 - MPMX20_00131 0.34 -0.9
132,371 + MPMX20_00131 0.36 -1.8
132,428 + MPMX20_00131 0.39 -0.7
132,440 + MPMX20_00131 0.40 -0.5
132,448 - MPMX20_00131 0.40 -2.8
132,471 + MPMX20_00131 0.42 -2.0
132,472 - MPMX20_00131 0.42 -2.5
132,568 + MPMX20_00131 0.47 -0.4
132,583 - MPMX20_00131 0.48 +1.0
132,607 - MPMX20_00131 0.50 -1.6
132,649 + MPMX20_00131 0.52 -1.7
132,654 + MPMX20_00131 0.53 +0.7
132,657 - MPMX20_00131 0.53 -2.1
132,657 - MPMX20_00131 0.53 -0.8
132,727 + MPMX20_00131 0.57 -0.9
132,783 - MPMX20_00131 0.60 -1.6
132,810 + MPMX20_00131 0.62 -2.2
132,818 - MPMX20_00131 0.62 -0.3
132,818 - MPMX20_00131 0.62 -2.0
132,818 - MPMX20_00131 0.62 -0.3
132,876 - MPMX20_00131 0.66 -2.0
132,876 - MPMX20_00131 0.66 +1.2
132,878 + MPMX20_00131 0.66 -0.9
132,878 + MPMX20_00131 0.66 -1.9
132,878 + MPMX20_00131 0.66 -1.1
132,886 - MPMX20_00131 0.67 -2.6
132,886 - MPMX20_00131 0.67 -1.3
132,886 - MPMX20_00131 0.67 -2.0
132,955 - MPMX20_00131 0.71 -1.1
132,964 + MPMX20_00131 0.71 -0.8
132,964 + MPMX20_00131 0.71 +1.9
133,022 - MPMX20_00131 0.75 -1.1
133,060 + MPMX20_00131 0.77 -0.2
133,204 + MPMX20_00131 0.86 -1.8
133,224 + MPMX20_00131 0.87 -1.1
133,233 + MPMX20_00131 0.88 +0.0
133,241 - MPMX20_00131 0.88 +0.2
133,251 - MPMX20_00131 0.89 -0.1
133,337 - -1.6
133,343 - -0.0
133,343 - -2.2
133,343 - +0.3
133,343 - -1.7
133,405 - -0.5
133,432 + -0.7
133,460 - -0.0
133,491 - +0.7
133,637 + -1.3
133,678 - -0.5
133,791 + MPMX20_00132 0.18 +0.6
133,870 + MPMX20_00132 0.40 +0.4
133,918 - MPMX20_00132 0.53 +0.1
134,030 + MPMX20_00132 0.84 -0.7
134,043 - MPMX20_00132 0.88 -0.2
134,123 + +0.4
134,123 + -0.7
134,123 + +1.7
134,131 - +0.7
134,131 - +1.7
134,131 - +0.3
134,135 - +1.9
134,256 - MPMX20_00133 0.19 -1.2
134,260 + MPMX20_00133 0.19 -1.2
134,260 + MPMX20_00133 0.19 +0.5
134,284 + MPMX20_00133 0.24 +0.0
134,307 + MPMX20_00133 0.27 -0.5
134,315 - MPMX20_00133 0.29 -0.3
134,331 + MPMX20_00133 0.31 +0.1
134,344 + MPMX20_00133 0.34 +0.5
134,349 + MPMX20_00133 0.35 -1.4
134,350 - MPMX20_00133 0.35 -0.2
134,370 + MPMX20_00133 0.38 -0.5
134,370 + MPMX20_00133 0.38 -0.6
134,389 + MPMX20_00133 0.41 +0.4
134,389 + MPMX20_00133 0.41 -1.1
134,397 - MPMX20_00133 0.43 +1.0
134,432 + MPMX20_00133 0.49 -2.2

Or see this region's nucleotide sequence