Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03345

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03344 and MPMX20_03345 are separated by 18 nucleotidesMPMX20_03345 and MPMX20_03346 overlap by 4 nucleotidesMPMX20_03346 and MPMX20_03347 are separated by 145 nucleotides MPMX20_03344: MPMX20_03344 - Beta-barrel assembly-enhancing protease, at 3,517,216 to 3,518,679 _03344 MPMX20_03345: MPMX20_03345 - putative protein YfgD, at 3,518,698 to 3,519,054 _03345 MPMX20_03346: MPMX20_03346 - hypothetical protein, at 3,519,051 to 3,519,875 _03346 MPMX20_03347: MPMX20_03347 - Lichenan permease IIC component, at 3,520,021 to 3,521,340 _03347 Position (kb) 3518 3519 3520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3517.761 kb on + strand, within MPMX20_03344at 3517.769 kb on - strand, within MPMX20_03344at 3517.783 kb on + strand, within MPMX20_03344at 3517.791 kb on - strand, within MPMX20_03344at 3517.791 kb on - strand, within MPMX20_03344at 3517.838 kb on + strand, within MPMX20_03344at 3517.861 kb on + strand, within MPMX20_03344at 3517.869 kb on + strand, within MPMX20_03344at 3517.869 kb on + strand, within MPMX20_03344at 3518.067 kb on + strand, within MPMX20_03344at 3518.075 kb on - strand, within MPMX20_03344at 3518.238 kb on - strand, within MPMX20_03344at 3518.352 kb on + strand, within MPMX20_03344at 3518.359 kb on - strand, within MPMX20_03344at 3518.381 kb on - strand, within MPMX20_03344at 3518.450 kb on + strand, within MPMX20_03344at 3518.462 kb on - strand, within MPMX20_03344at 3518.529 kb on - strand, within MPMX20_03344at 3518.532 kb on + strand, within MPMX20_03344at 3518.583 kb on + strandat 3518.595 kb on - strandat 3518.597 kb on + strandat 3518.642 kb on + strandat 3518.642 kb on - strandat 3518.654 kb on + strandat 3518.654 kb on + strandat 3518.654 kb on + strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.735 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.785 kb on - strand, within MPMX20_03345at 3518.824 kb on + strand, within MPMX20_03345at 3518.872 kb on - strand, within MPMX20_03345at 3518.895 kb on + strand, within MPMX20_03345at 3518.895 kb on + strand, within MPMX20_03345at 3518.896 kb on - strand, within MPMX20_03345at 3518.906 kb on - strand, within MPMX20_03345at 3518.941 kb on + strand, within MPMX20_03345at 3519.048 kb on + strandat 3519.049 kb on + strandat 3519.180 kb on - strand, within MPMX20_03346at 3519.213 kb on - strand, within MPMX20_03346at 3519.220 kb on + strand, within MPMX20_03346at 3519.327 kb on - strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.396 kb on + strand, within MPMX20_03346at 3519.594 kb on + strand, within MPMX20_03346at 3519.646 kb on + strand, within MPMX20_03346at 3519.656 kb on + strand, within MPMX20_03346at 3519.779 kb on + strand, within MPMX20_03346at 3519.815 kb on + strandat 3519.844 kb on + strandat 3520.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,517,761 + MPMX20_03344 0.37 -1.7
3,517,769 - MPMX20_03344 0.38 -1.5
3,517,783 + MPMX20_03344 0.39 -1.8
3,517,791 - MPMX20_03344 0.39 +1.1
3,517,791 - MPMX20_03344 0.39 +1.6
3,517,838 + MPMX20_03344 0.42 +1.3
3,517,861 + MPMX20_03344 0.44 -0.9
3,517,869 + MPMX20_03344 0.45 +0.9
3,517,869 + MPMX20_03344 0.45 +0.5
3,518,067 + MPMX20_03344 0.58 +0.3
3,518,075 - MPMX20_03344 0.59 -0.6
3,518,238 - MPMX20_03344 0.70 +0.6
3,518,352 + MPMX20_03344 0.78 +0.5
3,518,359 - MPMX20_03344 0.78 +1.4
3,518,381 - MPMX20_03344 0.80 -0.7
3,518,450 + MPMX20_03344 0.84 +1.4
3,518,462 - MPMX20_03344 0.85 -2.4
3,518,529 - MPMX20_03344 0.90 -1.2
3,518,532 + MPMX20_03344 0.90 -1.7
3,518,583 + -0.3
3,518,595 - +2.7
3,518,597 + +0.1
3,518,642 + +0.3
3,518,642 - -0.7
3,518,654 + -0.4
3,518,654 + +1.5
3,518,654 + -1.3
3,518,662 - +2.4
3,518,662 - -0.4
3,518,662 - +0.4
3,518,662 - +0.5
3,518,662 - +1.0
3,518,662 - +0.3
3,518,735 + MPMX20_03345 0.10 +2.4
3,518,753 + MPMX20_03345 0.15 +2.7
3,518,753 + MPMX20_03345 0.15 +0.5
3,518,753 + MPMX20_03345 0.15 +0.7
3,518,753 + MPMX20_03345 0.15 +0.1
3,518,753 + MPMX20_03345 0.15 -1.0
3,518,753 + MPMX20_03345 0.15 +2.4
3,518,761 - MPMX20_03345 0.18 -0.7
3,518,761 - MPMX20_03345 0.18 +1.7
3,518,761 - MPMX20_03345 0.18 -1.8
3,518,761 - MPMX20_03345 0.18 -1.2
3,518,761 - MPMX20_03345 0.18 -0.4
3,518,761 - MPMX20_03345 0.18 +1.0
3,518,785 - MPMX20_03345 0.24 +1.7
3,518,824 + MPMX20_03345 0.35 +0.0
3,518,872 - MPMX20_03345 0.49 -0.8
3,518,895 + MPMX20_03345 0.55 -1.2
3,518,895 + MPMX20_03345 0.55 -0.9
3,518,896 - MPMX20_03345 0.55 +4.3
3,518,906 - MPMX20_03345 0.58 -1.3
3,518,941 + MPMX20_03345 0.68 -1.9
3,519,048 + +1.3
3,519,049 + +0.3
3,519,180 - MPMX20_03346 0.16 -0.9
3,519,213 - MPMX20_03346 0.20 -0.3
3,519,220 + MPMX20_03346 0.20 +0.8
3,519,327 - MPMX20_03346 0.33 +1.1
3,519,375 + MPMX20_03346 0.39 -1.7
3,519,375 + MPMX20_03346 0.39 -2.4
3,519,396 + MPMX20_03346 0.42 -1.7
3,519,594 + MPMX20_03346 0.66 +0.6
3,519,646 + MPMX20_03346 0.72 +0.2
3,519,656 + MPMX20_03346 0.73 -0.1
3,519,779 + MPMX20_03346 0.88 -0.2
3,519,815 + -2.8
3,519,844 + +0.9
3,520,023 + +2.4

Or see this region's nucleotide sequence