Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03432

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03431 and MPMX20_03432 are separated by 118 nucleotidesMPMX20_03432 and MPMX20_03433 are separated by 56 nucleotidesMPMX20_03433 and MPMX20_03434 overlap by 4 nucleotidesMPMX20_03434 and MPMX20_03435 overlap by 1 nucleotides MPMX20_03431: MPMX20_03431 - N-acetylmuramic acid 6-phosphate etherase, at 3,620,164 to 3,621,057 _03431 MPMX20_03432: MPMX20_03432 - HTH-type transcriptional regulator MurR, at 3,621,176 to 3,622,024 _03432 MPMX20_03433: MPMX20_03433 - Ferredoxin YfhL, at 3,622,081 to 3,622,341 _03433 MPMX20_03434: MPMX20_03434 - Holo-[acyl-carrier-protein] synthase, at 3,622,338 to 3,622,718 _03434 MPMX20_03435: MPMX20_03435 - Pyridoxine 5'-phosphate synthase, at 3,622,718 to 3,623,449 _03435 Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3620.358 kb on + strand, within MPMX20_03431at 3620.496 kb on - strand, within MPMX20_03431at 3620.528 kb on + strand, within MPMX20_03431at 3620.601 kb on + strand, within MPMX20_03431at 3620.609 kb on - strand, within MPMX20_03431at 3620.632 kb on + strand, within MPMX20_03431at 3620.681 kb on - strand, within MPMX20_03431at 3620.681 kb on - strand, within MPMX20_03431at 3620.723 kb on - strand, within MPMX20_03431at 3620.732 kb on + strand, within MPMX20_03431at 3620.732 kb on + strand, within MPMX20_03431at 3620.760 kb on + strand, within MPMX20_03431at 3620.854 kb on + strand, within MPMX20_03431at 3620.972 kb on + strandat 3620.985 kb on + strandat 3621.059 kb on - strandat 3621.173 kb on + strandat 3621.173 kb on + strandat 3621.173 kb on + strandat 3621.173 kb on + strandat 3621.173 kb on + strandat 3621.173 kb on + strandat 3621.181 kb on - strandat 3621.309 kb on + strand, within MPMX20_03432at 3621.400 kb on + strand, within MPMX20_03432at 3621.400 kb on - strand, within MPMX20_03432at 3621.513 kb on + strand, within MPMX20_03432at 3621.513 kb on + strand, within MPMX20_03432at 3621.521 kb on - strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.591 kb on + strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.599 kb on - strand, within MPMX20_03432at 3621.683 kb on - strand, within MPMX20_03432at 3621.685 kb on + strand, within MPMX20_03432at 3621.685 kb on + strand, within MPMX20_03432at 3621.685 kb on + strand, within MPMX20_03432at 3621.733 kb on + strand, within MPMX20_03432at 3621.855 kb on + strand, within MPMX20_03432at 3621.864 kb on - strand, within MPMX20_03432at 3621.948 kb on + strandat 3621.948 kb on - strandat 3621.983 kb on - strandat 3621.996 kb on + strandat 3622.004 kb on - strandat 3622.004 kb on - strandat 3622.004 kb on - strandat 3622.018 kb on + strandat 3622.193 kb on + strand, within MPMX20_03433at 3622.208 kb on + strand, within MPMX20_03433at 3622.248 kb on + strand, within MPMX20_03433at 3622.286 kb on - strand, within MPMX20_03433at 3622.286 kb on - strand, within MPMX20_03433at 3622.307 kb on + strand, within MPMX20_03433

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,620,358 + MPMX20_03431 0.22 -0.7
3,620,496 - MPMX20_03431 0.37 +0.4
3,620,528 + MPMX20_03431 0.41 +0.1
3,620,601 + MPMX20_03431 0.49 +0.1
3,620,609 - MPMX20_03431 0.50 -0.4
3,620,632 + MPMX20_03431 0.52 -0.6
3,620,681 - MPMX20_03431 0.58 -0.6
3,620,681 - MPMX20_03431 0.58 -1.6
3,620,723 - MPMX20_03431 0.63 -0.0
3,620,732 + MPMX20_03431 0.64 +0.9
3,620,732 + MPMX20_03431 0.64 +0.1
3,620,760 + MPMX20_03431 0.67 -1.6
3,620,854 + MPMX20_03431 0.77 -1.0
3,620,972 + +0.4
3,620,985 + +2.2
3,621,059 - +0.9
3,621,173 + +0.7
3,621,173 + +0.6
3,621,173 + +2.2
3,621,173 + -1.5
3,621,173 + +0.4
3,621,173 + +0.7
3,621,181 - -0.2
3,621,309 + MPMX20_03432 0.16 +0.0
3,621,400 + MPMX20_03432 0.26 +0.8
3,621,400 - MPMX20_03432 0.26 +1.2
3,621,513 + MPMX20_03432 0.40 -3.2
3,621,513 + MPMX20_03432 0.40 -0.2
3,621,521 - MPMX20_03432 0.41 -0.5
3,621,591 + MPMX20_03432 0.49 -0.8
3,621,591 + MPMX20_03432 0.49 -2.7
3,621,591 + MPMX20_03432 0.49 +0.1
3,621,591 + MPMX20_03432 0.49 +0.1
3,621,591 + MPMX20_03432 0.49 +1.4
3,621,591 + MPMX20_03432 0.49 +0.3
3,621,591 + MPMX20_03432 0.49 -1.7
3,621,591 + MPMX20_03432 0.49 -0.3
3,621,591 + MPMX20_03432 0.49 -0.4
3,621,599 - MPMX20_03432 0.50 -0.8
3,621,599 - MPMX20_03432 0.50 -1.0
3,621,599 - MPMX20_03432 0.50 +1.2
3,621,599 - MPMX20_03432 0.50 -2.6
3,621,599 - MPMX20_03432 0.50 -1.3
3,621,599 - MPMX20_03432 0.50 +0.4
3,621,599 - MPMX20_03432 0.50 +1.9
3,621,599 - MPMX20_03432 0.50 -1.2
3,621,599 - MPMX20_03432 0.50 +0.4
3,621,683 - MPMX20_03432 0.60 -0.2
3,621,685 + MPMX20_03432 0.60 -1.2
3,621,685 + MPMX20_03432 0.60 -0.6
3,621,685 + MPMX20_03432 0.60 +1.2
3,621,733 + MPMX20_03432 0.66 -0.8
3,621,855 + MPMX20_03432 0.80 -0.9
3,621,864 - MPMX20_03432 0.81 +1.1
3,621,948 + +0.9
3,621,948 - -1.9
3,621,983 - +1.7
3,621,996 + -1.8
3,622,004 - +2.2
3,622,004 - -0.8
3,622,004 - -0.8
3,622,018 + -0.2
3,622,193 + MPMX20_03433 0.43 -1.9
3,622,208 + MPMX20_03433 0.49 -1.0
3,622,248 + MPMX20_03433 0.64 +1.0
3,622,286 - MPMX20_03433 0.79 -2.1
3,622,286 - MPMX20_03433 0.79 -1.0
3,622,307 + MPMX20_03433 0.87 -1.1

Or see this region's nucleotide sequence