Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02371

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02370 and MPMX20_02371 are separated by 204 nucleotidesMPMX20_02371 and MPMX20_02372 are separated by 43 nucleotidesMPMX20_02372 and MPMX20_02373 are separated by 199 nucleotides MPMX20_02370: MPMX20_02370 - putative ABC transporter ATP-binding protein YheS, at 2,497,478 to 2,499,187 _02370 MPMX20_02371: MPMX20_02371 - Alcohol dehydrogenase, propanol-preferring, at 2,499,392 to 2,500,402 _02371 MPMX20_02372: MPMX20_02372 - HTH-type transcriptional repressor NsrR, at 2,500,446 to 2,500,952 _02372 MPMX20_02373: MPMX20_02373 - NADH dehydrogenase-like protein, at 2,501,152 to 2,502,354 _02373 Position (kb) 2499 2500 2501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2498.413 kb on + strand, within MPMX20_02370at 2498.530 kb on + strand, within MPMX20_02370at 2498.574 kb on - strand, within MPMX20_02370at 2498.617 kb on + strand, within MPMX20_02370at 2498.717 kb on + strand, within MPMX20_02370at 2498.719 kb on + strand, within MPMX20_02370at 2498.766 kb on - strand, within MPMX20_02370at 2498.777 kb on + strand, within MPMX20_02370at 2498.852 kb on - strand, within MPMX20_02370at 2498.883 kb on - strand, within MPMX20_02370at 2498.967 kb on - strand, within MPMX20_02370at 2498.981 kb on - strand, within MPMX20_02370at 2498.999 kb on - strand, within MPMX20_02370at 2498.999 kb on - strand, within MPMX20_02370at 2499.101 kb on + strandat 2499.109 kb on - strandat 2499.109 kb on - strandat 2499.109 kb on - strandat 2499.190 kb on - strandat 2499.218 kb on + strandat 2499.221 kb on - strandat 2499.328 kb on + strandat 2499.328 kb on + strandat 2499.336 kb on - strandat 2499.345 kb on + strandat 2499.353 kb on - strandat 2499.353 kb on - strandat 2499.354 kb on + strandat 2499.389 kb on + strandat 2499.397 kb on - strandat 2499.427 kb on - strandat 2499.427 kb on - strandat 2499.468 kb on - strandat 2499.549 kb on + strand, within MPMX20_02371at 2499.607 kb on - strand, within MPMX20_02371at 2499.608 kb on - strand, within MPMX20_02371at 2499.654 kb on + strand, within MPMX20_02371at 2499.662 kb on - strand, within MPMX20_02371at 2499.681 kb on - strand, within MPMX20_02371at 2499.695 kb on - strand, within MPMX20_02371at 2499.705 kb on - strand, within MPMX20_02371at 2499.743 kb on + strand, within MPMX20_02371at 2499.743 kb on + strand, within MPMX20_02371at 2499.743 kb on + strand, within MPMX20_02371at 2499.749 kb on - strand, within MPMX20_02371at 2499.751 kb on - strand, within MPMX20_02371at 2499.751 kb on - strand, within MPMX20_02371at 2499.799 kb on - strand, within MPMX20_02371at 2499.833 kb on + strand, within MPMX20_02371at 2499.833 kb on - strand, within MPMX20_02371at 2499.857 kb on - strand, within MPMX20_02371at 2499.872 kb on - strand, within MPMX20_02371at 2499.873 kb on - strand, within MPMX20_02371at 2499.910 kb on + strand, within MPMX20_02371at 2499.910 kb on + strand, within MPMX20_02371at 2499.910 kb on + strand, within MPMX20_02371at 2499.918 kb on - strand, within MPMX20_02371at 2499.923 kb on - strand, within MPMX20_02371at 2500.060 kb on + strand, within MPMX20_02371at 2500.098 kb on - strand, within MPMX20_02371at 2500.120 kb on - strand, within MPMX20_02371at 2500.216 kb on - strand, within MPMX20_02371at 2500.216 kb on - strand, within MPMX20_02371at 2500.250 kb on + strand, within MPMX20_02371at 2500.251 kb on + strand, within MPMX20_02371at 2500.349 kb on - strandat 2500.369 kb on - strandat 2500.382 kb on - strandat 2500.382 kb on - strandat 2500.579 kb on - strand, within MPMX20_02372at 2500.581 kb on + strand, within MPMX20_02372at 2500.589 kb on - strand, within MPMX20_02372at 2500.612 kb on + strand, within MPMX20_02372at 2500.746 kb on - strand, within MPMX20_02372at 2500.785 kb on - strand, within MPMX20_02372at 2500.897 kb on + strand, within MPMX20_02372at 2500.908 kb on - strandat 2501.120 kb on + strandat 2501.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,498,413 + MPMX20_02370 0.55 +1.0
2,498,530 + MPMX20_02370 0.62 -0.3
2,498,574 - MPMX20_02370 0.64 -1.2
2,498,617 + MPMX20_02370 0.67 -0.4
2,498,717 + MPMX20_02370 0.72 -3.7
2,498,719 + MPMX20_02370 0.73 -0.1
2,498,766 - MPMX20_02370 0.75 +0.0
2,498,777 + MPMX20_02370 0.76 -0.5
2,498,852 - MPMX20_02370 0.80 -1.0
2,498,883 - MPMX20_02370 0.82 +1.4
2,498,967 - MPMX20_02370 0.87 -0.6
2,498,981 - MPMX20_02370 0.88 -0.6
2,498,999 - MPMX20_02370 0.89 -2.1
2,498,999 - MPMX20_02370 0.89 -0.4
2,499,101 + +2.1
2,499,109 - +2.2
2,499,109 - -1.1
2,499,109 - -0.9
2,499,190 - -1.7
2,499,218 + -0.6
2,499,221 - -1.3
2,499,328 + -2.1
2,499,328 + -0.2
2,499,336 - +2.7
2,499,345 + +1.1
2,499,353 - -3.3
2,499,353 - -0.4
2,499,354 + -2.3
2,499,389 + -1.4
2,499,397 - +0.1
2,499,427 - -0.5
2,499,427 - -1.0
2,499,468 - +2.3
2,499,549 + MPMX20_02371 0.16 -4.0
2,499,607 - MPMX20_02371 0.21 -0.6
2,499,608 - MPMX20_02371 0.21 -2.4
2,499,654 + MPMX20_02371 0.26 -2.4
2,499,662 - MPMX20_02371 0.27 -2.9
2,499,681 - MPMX20_02371 0.29 -1.8
2,499,695 - MPMX20_02371 0.30 -0.6
2,499,705 - MPMX20_02371 0.31 -3.5
2,499,743 + MPMX20_02371 0.35 -0.9
2,499,743 + MPMX20_02371 0.35 -1.2
2,499,743 + MPMX20_02371 0.35 -0.9
2,499,749 - MPMX20_02371 0.35 -2.1
2,499,751 - MPMX20_02371 0.36 -0.3
2,499,751 - MPMX20_02371 0.36 -2.0
2,499,799 - MPMX20_02371 0.40 +3.0
2,499,833 + MPMX20_02371 0.44 -2.3
2,499,833 - MPMX20_02371 0.44 -1.6
2,499,857 - MPMX20_02371 0.46 +1.8
2,499,872 - MPMX20_02371 0.47 -0.4
2,499,873 - MPMX20_02371 0.48 -2.1
2,499,910 + MPMX20_02371 0.51 -2.6
2,499,910 + MPMX20_02371 0.51 -0.6
2,499,910 + MPMX20_02371 0.51 -0.5
2,499,918 - MPMX20_02371 0.52 -3.7
2,499,923 - MPMX20_02371 0.53 +0.4
2,500,060 + MPMX20_02371 0.66 -2.3
2,500,098 - MPMX20_02371 0.70 -0.7
2,500,120 - MPMX20_02371 0.72 -1.3
2,500,216 - MPMX20_02371 0.82 -1.4
2,500,216 - MPMX20_02371 0.82 -1.1
2,500,250 + MPMX20_02371 0.85 +0.6
2,500,251 + MPMX20_02371 0.85 -1.9
2,500,349 - -2.1
2,500,369 - -1.4
2,500,382 - -2.7
2,500,382 - -2.0
2,500,579 - MPMX20_02372 0.26 -2.0
2,500,581 + MPMX20_02372 0.27 -2.4
2,500,589 - MPMX20_02372 0.28 -0.6
2,500,612 + MPMX20_02372 0.33 +0.7
2,500,746 - MPMX20_02372 0.59 -0.3
2,500,785 - MPMX20_02372 0.67 +1.0
2,500,897 + MPMX20_02372 0.89 +0.7
2,500,908 - +1.0
2,501,120 + +2.2
2,501,120 + -0.3

Or see this region's nucleotide sequence