Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02370 and MPMX20_02371 are separated by 204 nucleotides MPMX20_02371 and MPMX20_02372 are separated by 43 nucleotides MPMX20_02372 and MPMX20_02373 are separated by 199 nucleotides
MPMX20_02370: MPMX20_02370 - putative ABC transporter ATP-binding protein YheS, at 2,497,478 to 2,499,187
_02370
MPMX20_02371: MPMX20_02371 - Alcohol dehydrogenase, propanol-preferring, at 2,499,392 to 2,500,402
_02371
MPMX20_02372: MPMX20_02372 - HTH-type transcriptional repressor NsrR, at 2,500,446 to 2,500,952
_02372
MPMX20_02373: MPMX20_02373 - NADH dehydrogenase-like protein, at 2,501,152 to 2,502,354
_02373
Position (kb)
2499
2500
2501 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2498.413 kb on + strand, within MPMX20_02370 at 2498.530 kb on + strand, within MPMX20_02370 at 2498.574 kb on - strand, within MPMX20_02370 at 2498.617 kb on + strand, within MPMX20_02370 at 2498.717 kb on + strand, within MPMX20_02370 at 2498.719 kb on + strand, within MPMX20_02370 at 2498.766 kb on - strand, within MPMX20_02370 at 2498.777 kb on + strand, within MPMX20_02370 at 2498.852 kb on - strand, within MPMX20_02370 at 2498.883 kb on - strand, within MPMX20_02370 at 2498.967 kb on - strand, within MPMX20_02370 at 2498.981 kb on - strand, within MPMX20_02370 at 2498.999 kb on - strand, within MPMX20_02370 at 2498.999 kb on - strand, within MPMX20_02370 at 2499.101 kb on + strand at 2499.109 kb on - strand at 2499.109 kb on - strand at 2499.109 kb on - strand at 2499.190 kb on - strand at 2499.218 kb on + strand at 2499.221 kb on - strand at 2499.328 kb on + strand at 2499.328 kb on + strand at 2499.336 kb on - strand at 2499.345 kb on + strand at 2499.353 kb on - strand at 2499.353 kb on - strand at 2499.354 kb on + strand at 2499.389 kb on + strand at 2499.397 kb on - strand at 2499.427 kb on - strand at 2499.427 kb on - strand at 2499.468 kb on - strand at 2499.549 kb on + strand, within MPMX20_02371 at 2499.607 kb on - strand, within MPMX20_02371 at 2499.608 kb on - strand, within MPMX20_02371 at 2499.654 kb on + strand, within MPMX20_02371 at 2499.662 kb on - strand, within MPMX20_02371 at 2499.681 kb on - strand, within MPMX20_02371 at 2499.695 kb on - strand, within MPMX20_02371 at 2499.705 kb on - strand, within MPMX20_02371 at 2499.743 kb on + strand, within MPMX20_02371 at 2499.743 kb on + strand, within MPMX20_02371 at 2499.743 kb on + strand, within MPMX20_02371 at 2499.749 kb on - strand, within MPMX20_02371 at 2499.751 kb on - strand, within MPMX20_02371 at 2499.751 kb on - strand, within MPMX20_02371 at 2499.799 kb on - strand, within MPMX20_02371 at 2499.833 kb on + strand, within MPMX20_02371 at 2499.833 kb on - strand, within MPMX20_02371 at 2499.857 kb on - strand, within MPMX20_02371 at 2499.872 kb on - strand, within MPMX20_02371 at 2499.873 kb on - strand, within MPMX20_02371 at 2499.910 kb on + strand, within MPMX20_02371 at 2499.910 kb on + strand, within MPMX20_02371 at 2499.910 kb on + strand, within MPMX20_02371 at 2499.918 kb on - strand, within MPMX20_02371 at 2499.923 kb on - strand, within MPMX20_02371 at 2500.060 kb on + strand, within MPMX20_02371 at 2500.098 kb on - strand, within MPMX20_02371 at 2500.120 kb on - strand, within MPMX20_02371 at 2500.216 kb on - strand, within MPMX20_02371 at 2500.216 kb on - strand, within MPMX20_02371 at 2500.250 kb on + strand, within MPMX20_02371 at 2500.251 kb on + strand, within MPMX20_02371 at 2500.349 kb on - strand at 2500.369 kb on - strand at 2500.382 kb on - strand at 2500.382 kb on - strand at 2500.579 kb on - strand, within MPMX20_02372 at 2500.581 kb on + strand, within MPMX20_02372 at 2500.589 kb on - strand, within MPMX20_02372 at 2500.612 kb on + strand, within MPMX20_02372 at 2500.746 kb on - strand, within MPMX20_02372 at 2500.785 kb on - strand, within MPMX20_02372 at 2500.897 kb on + strand, within MPMX20_02372 at 2500.908 kb on - strand at 2501.120 kb on + strand at 2501.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,498,413 + MPMX20_02370 0.55 +1.0 2,498,530 + MPMX20_02370 0.62 -0.3 2,498,574 - MPMX20_02370 0.64 -1.2 2,498,617 + MPMX20_02370 0.67 -0.4 2,498,717 + MPMX20_02370 0.72 -3.7 2,498,719 + MPMX20_02370 0.73 -0.1 2,498,766 - MPMX20_02370 0.75 +0.0 2,498,777 + MPMX20_02370 0.76 -0.5 2,498,852 - MPMX20_02370 0.80 -1.0 2,498,883 - MPMX20_02370 0.82 +1.4 2,498,967 - MPMX20_02370 0.87 -0.6 2,498,981 - MPMX20_02370 0.88 -0.6 2,498,999 - MPMX20_02370 0.89 -2.1 2,498,999 - MPMX20_02370 0.89 -0.4 2,499,101 + +2.1 2,499,109 - +2.2 2,499,109 - -1.1 2,499,109 - -0.9 2,499,190 - -1.7 2,499,218 + -0.6 2,499,221 - -1.3 2,499,328 + -2.1 2,499,328 + -0.2 2,499,336 - +2.7 2,499,345 + +1.1 2,499,353 - -3.3 2,499,353 - -0.4 2,499,354 + -2.3 2,499,389 + -1.4 2,499,397 - +0.1 2,499,427 - -0.5 2,499,427 - -1.0 2,499,468 - +2.3 2,499,549 + MPMX20_02371 0.16 -4.0 2,499,607 - MPMX20_02371 0.21 -0.6 2,499,608 - MPMX20_02371 0.21 -2.4 2,499,654 + MPMX20_02371 0.26 -2.4 2,499,662 - MPMX20_02371 0.27 -2.9 2,499,681 - MPMX20_02371 0.29 -1.8 2,499,695 - MPMX20_02371 0.30 -0.6 2,499,705 - MPMX20_02371 0.31 -3.5 2,499,743 + MPMX20_02371 0.35 -0.9 2,499,743 + MPMX20_02371 0.35 -1.2 2,499,743 + MPMX20_02371 0.35 -0.9 2,499,749 - MPMX20_02371 0.35 -2.1 2,499,751 - MPMX20_02371 0.36 -0.3 2,499,751 - MPMX20_02371 0.36 -2.0 2,499,799 - MPMX20_02371 0.40 +3.0 2,499,833 + MPMX20_02371 0.44 -2.3 2,499,833 - MPMX20_02371 0.44 -1.6 2,499,857 - MPMX20_02371 0.46 +1.8 2,499,872 - MPMX20_02371 0.47 -0.4 2,499,873 - MPMX20_02371 0.48 -2.1 2,499,910 + MPMX20_02371 0.51 -2.6 2,499,910 + MPMX20_02371 0.51 -0.6 2,499,910 + MPMX20_02371 0.51 -0.5 2,499,918 - MPMX20_02371 0.52 -3.7 2,499,923 - MPMX20_02371 0.53 +0.4 2,500,060 + MPMX20_02371 0.66 -2.3 2,500,098 - MPMX20_02371 0.70 -0.7 2,500,120 - MPMX20_02371 0.72 -1.3 2,500,216 - MPMX20_02371 0.82 -1.4 2,500,216 - MPMX20_02371 0.82 -1.1 2,500,250 + MPMX20_02371 0.85 +0.6 2,500,251 + MPMX20_02371 0.85 -1.9 2,500,349 - -2.1 2,500,369 - -1.4 2,500,382 - -2.7 2,500,382 - -2.0 2,500,579 - MPMX20_02372 0.26 -2.0 2,500,581 + MPMX20_02372 0.27 -2.4 2,500,589 - MPMX20_02372 0.28 -0.6 2,500,612 + MPMX20_02372 0.33 +0.7 2,500,746 - MPMX20_02372 0.59 -0.3 2,500,785 - MPMX20_02372 0.67 +1.0 2,500,897 + MPMX20_02372 0.89 +0.7 2,500,908 - +1.0 2,501,120 + +2.2 2,501,120 + -0.3
Or see this region's nucleotide sequence