Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00335 and MPMX20_00336 are separated by 68 nucleotides MPMX20_00336 and MPMX20_00337 are separated by 632 nucleotides MPMX20_00337 and MPMX20_00338 are separated by 3 nucleotides MPMX20_00338 and MPMX20_00339 are separated by 56 nucleotides MPMX20_00339 and MPMX20_00340 are separated by 22 nucleotides MPMX20_00340 and MPMX20_00341 are separated by 20 nucleotides
MPMX20_00335: MPMX20_00335 - 23S ribosomal RNA, at 355,596 to 358,498
_00335
MPMX20_00336: MPMX20_00336 - 5S ribosomal RNA, at 358,567 to 358,677
_00336
MPMX20_00337: MPMX20_00337 - hypothetical protein, at 359,310 to 359,492
_00337
MPMX20_00338: MPMX20_00338 - Cytoskeleton-binding toxin CbtA, at 359,496 to 359,867
_00338
MPMX20_00339: MPMX20_00339 - Cytoskeleton bundling-enhancing antitoxin CbeA, at 359,924 to 360,289
_00339
MPMX20_00340: MPMX20_00340 - hypothetical protein, at 360,312 to 360,533
_00340
MPMX20_00341: MPMX20_00341 - hypothetical protein, at 360,554 to 361,033
_00341
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 358.743 kb on + strand at 358.745 kb on + strand at 358.791 kb on + strand at 358.836 kb on + strand at 358.836 kb on + strand at 358.836 kb on + strand at 358.844 kb on - strand at 358.844 kb on - strand at 358.854 kb on - strand at 358.890 kb on - strand at 358.912 kb on - strand at 358.913 kb on + strand at 358.921 kb on - strand at 358.921 kb on - strand at 358.971 kb on + strand at 358.973 kb on - strand at 358.979 kb on - strand at 358.979 kb on - strand at 359.078 kb on + strand at 359.078 kb on + strand at 359.078 kb on + strand at 359.088 kb on - strand at 359.128 kb on - strand at 359.133 kb on - strand at 359.142 kb on + strand at 359.142 kb on + strand at 359.142 kb on + strand at 359.142 kb on + strand at 359.142 kb on + strand at 359.142 kb on + strand at 359.150 kb on - strand at 359.150 kb on - strand at 359.222 kb on - strand at 359.237 kb on - strand at 359.274 kb on + strand at 359.274 kb on + strand at 359.274 kb on + strand at 359.301 kb on + strand at 359.301 kb on + strand at 359.302 kb on + strand at 359.309 kb on - strand at 359.334 kb on + strand, within MPMX20_00337 at 359.342 kb on + strand, within MPMX20_00337 at 359.378 kb on + strand, within MPMX20_00337 at 359.383 kb on + strand, within MPMX20_00337 at 359.383 kb on + strand, within MPMX20_00337 at 359.391 kb on - strand, within MPMX20_00337 at 359.402 kb on + strand, within MPMX20_00337 at 359.417 kb on + strand, within MPMX20_00337 at 359.425 kb on - strand, within MPMX20_00337 at 359.427 kb on + strand, within MPMX20_00337 at 359.427 kb on + strand, within MPMX20_00337 at 359.435 kb on - strand, within MPMX20_00337 at 359.435 kb on - strand, within MPMX20_00337 at 359.435 kb on - strand, within MPMX20_00337 at 359.437 kb on + strand, within MPMX20_00337 at 359.437 kb on + strand, within MPMX20_00337 at 359.437 kb on + strand, within MPMX20_00337 at 359.437 kb on + strand, within MPMX20_00337 at 359.445 kb on - strand, within MPMX20_00337 at 359.488 kb on - strand at 359.508 kb on + strand at 359.523 kb on - strand at 359.530 kb on - strand at 359.537 kb on - strand, within MPMX20_00338 at 359.555 kb on + strand, within MPMX20_00338 at 359.568 kb on - strand, within MPMX20_00338 at 359.588 kb on + strand, within MPMX20_00338 at 359.606 kb on - strand, within MPMX20_00338 at 359.644 kb on + strand, within MPMX20_00338 at 359.644 kb on + strand, within MPMX20_00338 at 359.652 kb on - strand, within MPMX20_00338 at 359.701 kb on - strand, within MPMX20_00338 at 359.719 kb on + strand, within MPMX20_00338 at 359.719 kb on + strand, within MPMX20_00338 at 359.817 kb on + strand, within MPMX20_00338 at 359.852 kb on + strand at 359.902 kb on + strand at 359.972 kb on - strand, within MPMX20_00339 at 359.972 kb on - strand, within MPMX20_00339 at 359.992 kb on - strand, within MPMX20_00339 at 359.992 kb on - strand, within MPMX20_00339 at 359.997 kb on - strand, within MPMX20_00339 at 360.033 kb on - strand, within MPMX20_00339 at 360.048 kb on + strand, within MPMX20_00339 at 360.048 kb on + strand, within MPMX20_00339 at 360.056 kb on - strand, within MPMX20_00339 at 360.061 kb on - strand, within MPMX20_00339 at 360.079 kb on + strand, within MPMX20_00339 at 360.127 kb on - strand, within MPMX20_00339 at 360.127 kb on - strand, within MPMX20_00339 at 360.132 kb on - strand, within MPMX20_00339 at 360.132 kb on - strand, within MPMX20_00339 at 360.188 kb on + strand, within MPMX20_00339 at 360.213 kb on - strand, within MPMX20_00339 at 360.248 kb on - strand, within MPMX20_00339 at 360.250 kb on - strand, within MPMX20_00339 at 360.266 kb on + strand at 360.266 kb on + strand at 360.271 kb on + strand at 360.299 kb on + strand at 360.299 kb on + strand at 360.307 kb on - strand at 360.307 kb on - strand at 360.307 kb on - strand at 360.320 kb on + strand at 360.320 kb on + strand at 360.328 kb on - strand at 360.328 kb on - strand at 360.328 kb on - strand at 360.328 kb on - strand at 360.338 kb on - strand, within MPMX20_00340 at 360.399 kb on + strand, within MPMX20_00340 at 360.407 kb on - strand, within MPMX20_00340 at 360.495 kb on + strand, within MPMX20_00340 at 360.503 kb on - strand, within MPMX20_00340 at 360.507 kb on + strand, within MPMX20_00340 at 360.515 kb on - strand at 360.593 kb on - strand at 360.601 kb on + strand at 360.601 kb on + strand at 360.609 kb on - strand, within MPMX20_00341 at 360.609 kb on - strand, within MPMX20_00341 at 360.623 kb on + strand, within MPMX20_00341 at 360.658 kb on + strand, within MPMX20_00341 at 360.658 kb on + strand, within MPMX20_00341 at 360.675 kb on + strand, within MPMX20_00341 at 360.683 kb on - strand, within MPMX20_00341 at 360.704 kb on - strand, within MPMX20_00341 at 360.710 kb on - strand, within MPMX20_00341 at 360.750 kb on + strand, within MPMX20_00341 at 360.750 kb on + strand, within MPMX20_00341 at 360.758 kb on - strand, within MPMX20_00341 at 360.758 kb on - strand, within MPMX20_00341 at 360.769 kb on + strand, within MPMX20_00341 at 360.777 kb on - strand, within MPMX20_00341 at 360.777 kb on - strand, within MPMX20_00341 at 360.856 kb on + strand, within MPMX20_00341
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 358,743 + +0.1 358,745 + +0.0 358,791 + +2.3 358,836 + -0.3 358,836 + +1.4 358,836 + +0.1 358,844 - +0.7 358,844 - +1.0 358,854 - -0.3 358,890 - +0.2 358,912 - -0.6 358,913 + -0.5 358,921 - -0.9 358,921 - +1.5 358,971 + -1.7 358,973 - +5.0 358,979 - -0.7 358,979 - -2.2 359,078 + -0.6 359,078 + +0.1 359,078 + +0.9 359,088 - +1.1 359,128 - -1.0 359,133 - -2.9 359,142 + +1.1 359,142 + -1.4 359,142 + +0.8 359,142 + -3.6 359,142 + -0.9 359,142 + -1.6 359,150 - -1.2 359,150 - +1.7 359,222 - -2.2 359,237 - +0.3 359,274 + -0.9 359,274 + +2.6 359,274 + +1.6 359,301 + +1.4 359,301 + -1.2 359,302 + -0.6 359,309 - -0.9 359,334 + MPMX20_00337 0.13 -0.9 359,342 + MPMX20_00337 0.17 -1.3 359,378 + MPMX20_00337 0.37 +0.4 359,383 + MPMX20_00337 0.40 -2.2 359,383 + MPMX20_00337 0.40 +2.2 359,391 - MPMX20_00337 0.44 -0.5 359,402 + MPMX20_00337 0.50 +0.2 359,417 + MPMX20_00337 0.58 +1.5 359,425 - MPMX20_00337 0.63 +1.5 359,427 + MPMX20_00337 0.64 +1.2 359,427 + MPMX20_00337 0.64 +2.1 359,435 - MPMX20_00337 0.68 -2.0 359,435 - MPMX20_00337 0.68 +1.5 359,435 - MPMX20_00337 0.68 +1.4 359,437 + MPMX20_00337 0.69 -0.5 359,437 + MPMX20_00337 0.69 -0.2 359,437 + MPMX20_00337 0.69 -2.1 359,437 + MPMX20_00337 0.69 -1.1 359,445 - MPMX20_00337 0.74 +1.1 359,488 - -0.1 359,508 + -0.2 359,523 - -1.3 359,530 - +2.3 359,537 - MPMX20_00338 0.11 -3.4 359,555 + MPMX20_00338 0.16 +1.1 359,568 - MPMX20_00338 0.19 -0.4 359,588 + MPMX20_00338 0.25 -0.4 359,606 - MPMX20_00338 0.30 +1.7 359,644 + MPMX20_00338 0.40 +0.4 359,644 + MPMX20_00338 0.40 +1.6 359,652 - MPMX20_00338 0.42 +0.5 359,701 - MPMX20_00338 0.55 +0.6 359,719 + MPMX20_00338 0.60 -0.2 359,719 + MPMX20_00338 0.60 +1.7 359,817 + MPMX20_00338 0.86 -1.5 359,852 + -0.8 359,902 + -0.6 359,972 - MPMX20_00339 0.13 +1.4 359,972 - MPMX20_00339 0.13 +0.8 359,992 - MPMX20_00339 0.19 +1.9 359,992 - MPMX20_00339 0.19 +2.1 359,997 - MPMX20_00339 0.20 +0.3 360,033 - MPMX20_00339 0.30 -0.4 360,048 + MPMX20_00339 0.34 +0.4 360,048 + MPMX20_00339 0.34 +0.6 360,056 - MPMX20_00339 0.36 -0.6 360,061 - MPMX20_00339 0.37 +0.3 360,079 + MPMX20_00339 0.42 -0.5 360,127 - MPMX20_00339 0.55 -0.8 360,127 - MPMX20_00339 0.55 +2.9 360,132 - MPMX20_00339 0.57 +0.1 360,132 - MPMX20_00339 0.57 -1.1 360,188 + MPMX20_00339 0.72 +0.8 360,213 - MPMX20_00339 0.79 +0.8 360,248 - MPMX20_00339 0.89 -1.6 360,250 - MPMX20_00339 0.89 +0.3 360,266 + +1.6 360,266 + -0.6 360,271 + +0.3 360,299 + +1.6 360,299 + -2.3 360,307 - +0.0 360,307 - -0.2 360,307 - -1.1 360,320 + +0.4 360,320 + -2.7 360,328 - +1.8 360,328 - -0.3 360,328 - -3.2 360,328 - -1.5 360,338 - MPMX20_00340 0.12 +1.8 360,399 + MPMX20_00340 0.39 +0.8 360,407 - MPMX20_00340 0.43 +1.9 360,495 + MPMX20_00340 0.82 -2.0 360,503 - MPMX20_00340 0.86 +2.5 360,507 + MPMX20_00340 0.88 -0.4 360,515 - +1.3 360,593 - +0.6 360,601 + -1.7 360,601 + -0.1 360,609 - MPMX20_00341 0.11 +1.3 360,609 - MPMX20_00341 0.11 +3.2 360,623 + MPMX20_00341 0.14 +1.5 360,658 + MPMX20_00341 0.22 +1.6 360,658 + MPMX20_00341 0.22 -0.9 360,675 + MPMX20_00341 0.25 +1.3 360,683 - MPMX20_00341 0.27 -0.3 360,704 - MPMX20_00341 0.31 -1.3 360,710 - MPMX20_00341 0.33 -0.9 360,750 + MPMX20_00341 0.41 -3.4 360,750 + MPMX20_00341 0.41 +0.7 360,758 - MPMX20_00341 0.42 +1.2 360,758 - MPMX20_00341 0.42 -1.2 360,769 + MPMX20_00341 0.45 +0.9 360,777 - MPMX20_00341 0.46 -2.7 360,777 - MPMX20_00341 0.46 +0.1 360,856 + MPMX20_00341 0.63 +0.9
Or see this region's nucleotide sequence