Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03822 and MPMX20_03823 overlap by 23 nucleotides MPMX20_03823 and MPMX20_03824 are separated by 2 nucleotides MPMX20_03824 and MPMX20_03825 are separated by 10 nucleotides MPMX20_03825 and MPMX20_03826 overlap by 4 nucleotides
MPMX20_03822: MPMX20_03822 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,024,269 to 4,025,078
_03822
MPMX20_03823: MPMX20_03823 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,025,056 to 4,025,595
_03823
MPMX20_03824: MPMX20_03824 - Citrate lyase alpha chain, at 4,025,598 to 4,027,115
_03824
MPMX20_03825: MPMX20_03825 - Citrate lyase subunit beta, at 4,027,126 to 4,028,001
_03825
MPMX20_03826: MPMX20_03826 - Citrate lyase acyl carrier protein, at 4,027,998 to 4,028,291
_03826
Position (kb)
4025
4026
4027
4028 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4024.615 kb on + strand, within MPMX20_03822 at 4024.627 kb on + strand, within MPMX20_03822 at 4024.630 kb on - strand, within MPMX20_03822 at 4024.660 kb on - strand, within MPMX20_03822 at 4024.669 kb on + strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.684 kb on + strand, within MPMX20_03822 at 4024.800 kb on - strand, within MPMX20_03822 at 4024.859 kb on - strand, within MPMX20_03822 at 4024.866 kb on + strand, within MPMX20_03822 at 4024.873 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.875 kb on - strand, within MPMX20_03822 at 4024.875 kb on - strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.918 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.973 kb on - strand, within MPMX20_03822 at 4024.982 kb on - strand, within MPMX20_03822 at 4025.135 kb on + strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.179 kb on - strand, within MPMX20_03823 at 4025.209 kb on + strand, within MPMX20_03823 at 4025.214 kb on + strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.222 kb on - strand, within MPMX20_03823 at 4025.256 kb on + strand, within MPMX20_03823 at 4025.271 kb on + strand, within MPMX20_03823 at 4025.279 kb on - strand, within MPMX20_03823 at 4025.352 kb on + strand, within MPMX20_03823 at 4025.359 kb on + strand, within MPMX20_03823 at 4025.367 kb on - strand, within MPMX20_03823 at 4025.372 kb on - strand, within MPMX20_03823 at 4025.487 kb on + strand, within MPMX20_03823 at 4025.495 kb on - strand, within MPMX20_03823 at 4025.553 kb on + strand at 4025.567 kb on - strand at 4025.572 kb on - strand at 4025.603 kb on + strand at 4025.612 kb on + strand at 4025.612 kb on + strand at 4025.620 kb on - strand at 4025.620 kb on - strand at 4025.620 kb on - strand at 4025.670 kb on + strand at 4025.715 kb on + strand at 4025.832 kb on + strand, within MPMX20_03824 at 4025.832 kb on - strand, within MPMX20_03824 at 4025.834 kb on + strand, within MPMX20_03824 at 4025.884 kb on - strand, within MPMX20_03824 at 4025.899 kb on - strand, within MPMX20_03824 at 4026.044 kb on + strand, within MPMX20_03824 at 4026.061 kb on - strand, within MPMX20_03824 at 4026.184 kb on - strand, within MPMX20_03824 at 4026.184 kb on - strand, within MPMX20_03824 at 4026.233 kb on + strand, within MPMX20_03824 at 4026.233 kb on + strand, within MPMX20_03824 at 4026.233 kb on + strand, within MPMX20_03824 at 4026.439 kb on + strand, within MPMX20_03824 at 4026.439 kb on + strand, within MPMX20_03824 at 4026.439 kb on + strand, within MPMX20_03824 at 4026.447 kb on - strand, within MPMX20_03824 at 4026.565 kb on - strand, within MPMX20_03824 at 4026.606 kb on - strand, within MPMX20_03824 at 4026.632 kb on - strand, within MPMX20_03824 at 4026.660 kb on - strand, within MPMX20_03824 at 4026.758 kb on + strand, within MPMX20_03824 at 4026.769 kb on + strand, within MPMX20_03824 at 4026.769 kb on + strand, within MPMX20_03824 at 4026.820 kb on + strand, within MPMX20_03824 at 4026.892 kb on + strand, within MPMX20_03824 at 4026.950 kb on + strand, within MPMX20_03824 at 4026.959 kb on - strand, within MPMX20_03824 at 4026.961 kb on - strand, within MPMX20_03824 at 4026.963 kb on + strand, within MPMX20_03824 at 4026.963 kb on + strand, within MPMX20_03824 at 4026.963 kb on + strand, within MPMX20_03824 at 4026.971 kb on - strand at 4026.971 kb on - strand at 4026.979 kb on - strand at 4027.003 kb on - strand at 4027.021 kb on - strand at 4027.034 kb on + strand at 4027.047 kb on - strand at 4027.061 kb on + strand at 4027.061 kb on + strand at 4027.086 kb on + strand at 4027.103 kb on - strand at 4027.117 kb on + strand at 4027.139 kb on + strand at 4027.177 kb on + strand at 4027.230 kb on - strand, within MPMX20_03825 at 4027.296 kb on + strand, within MPMX20_03825 at 4027.317 kb on + strand, within MPMX20_03825 at 4027.321 kb on + strand, within MPMX20_03825 at 4027.329 kb on - strand, within MPMX20_03825 at 4027.488 kb on + strand, within MPMX20_03825 at 4027.496 kb on - strand, within MPMX20_03825 at 4027.543 kb on - strand, within MPMX20_03825 at 4027.589 kb on + strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.597 kb on - strand, within MPMX20_03825 at 4027.607 kb on - strand, within MPMX20_03825 at 4027.607 kb on - strand, within MPMX20_03825 at 4027.680 kb on - strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.701 kb on + strand, within MPMX20_03825 at 4027.709 kb on - strand, within MPMX20_03825 at 4027.734 kb on + strand, within MPMX20_03825 at 4027.758 kb on + strand, within MPMX20_03825 at 4027.801 kb on - strand, within MPMX20_03825 at 4027.892 kb on - strand, within MPMX20_03825 at 4027.918 kb on + strand at 4027.977 kb on + strand at 4028.009 kb on + strand at 4028.009 kb on + strand at 4028.045 kb on + strand, within MPMX20_03826 at 4028.074 kb on + strand, within MPMX20_03826 at 4028.079 kb on + strand, within MPMX20_03826 at 4028.087 kb on - strand, within MPMX20_03826 at 4028.087 kb on - strand, within MPMX20_03826
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 4,024,615 + MPMX20_03822 0.43 -1.9 4,024,627 + MPMX20_03822 0.44 -1.2 4,024,630 - MPMX20_03822 0.45 -0.5 4,024,660 - MPMX20_03822 0.48 -1.5 4,024,669 + MPMX20_03822 0.49 -0.5 4,024,671 - MPMX20_03822 0.50 -1.1 4,024,671 - MPMX20_03822 0.50 -3.2 4,024,684 + MPMX20_03822 0.51 -2.0 4,024,800 - MPMX20_03822 0.66 -2.4 4,024,859 - MPMX20_03822 0.73 -0.2 4,024,866 + MPMX20_03822 0.74 -1.4 4,024,873 - MPMX20_03822 0.75 -0.6 4,024,874 - MPMX20_03822 0.75 -3.6 4,024,874 - MPMX20_03822 0.75 -0.5 4,024,875 - MPMX20_03822 0.75 +1.5 4,024,875 - MPMX20_03822 0.75 -1.1 4,024,877 + MPMX20_03822 0.75 -3.6 4,024,877 + MPMX20_03822 0.75 -0.5 4,024,918 - MPMX20_03822 0.80 +1.9 4,024,968 - MPMX20_03822 0.86 -2.7 4,024,968 - MPMX20_03822 0.86 -1.9 4,024,973 - MPMX20_03822 0.87 +0.5 4,024,982 - MPMX20_03822 0.88 -2.3 4,025,135 + MPMX20_03823 0.15 -1.9 4,025,148 - MPMX20_03823 0.17 +0.0 4,025,148 - MPMX20_03823 0.17 -0.5 4,025,179 - MPMX20_03823 0.23 -1.6 4,025,209 + MPMX20_03823 0.28 -0.7 4,025,214 + MPMX20_03823 0.29 -1.9 4,025,217 - MPMX20_03823 0.30 -0.4 4,025,217 - MPMX20_03823 0.30 +1.3 4,025,222 - MPMX20_03823 0.31 -1.2 4,025,256 + MPMX20_03823 0.37 -2.0 4,025,271 + MPMX20_03823 0.40 -1.5 4,025,279 - MPMX20_03823 0.41 -1.8 4,025,352 + MPMX20_03823 0.55 -1.3 4,025,359 + MPMX20_03823 0.56 -1.6 4,025,367 - MPMX20_03823 0.58 -1.4 4,025,372 - MPMX20_03823 0.59 -0.5 4,025,487 + MPMX20_03823 0.80 -0.7 4,025,495 - MPMX20_03823 0.81 -3.4 4,025,553 + -0.8 4,025,567 - -2.4 4,025,572 - +0.1 4,025,603 + -0.7 4,025,612 + +1.1 4,025,612 + +0.7 4,025,620 - +0.4 4,025,620 - -0.9 4,025,620 - -2.9 4,025,670 + -1.9 4,025,715 + -2.8 4,025,832 + MPMX20_03824 0.15 -1.8 4,025,832 - MPMX20_03824 0.15 -2.4 4,025,834 + MPMX20_03824 0.16 -3.1 4,025,884 - MPMX20_03824 0.19 -2.7 4,025,899 - MPMX20_03824 0.20 -2.3 4,026,044 + MPMX20_03824 0.29 -1.5 4,026,061 - MPMX20_03824 0.31 -1.2 4,026,184 - MPMX20_03824 0.39 -1.7 4,026,184 - MPMX20_03824 0.39 -0.6 4,026,233 + MPMX20_03824 0.42 -0.3 4,026,233 + MPMX20_03824 0.42 -1.6 4,026,233 + MPMX20_03824 0.42 -2.8 4,026,439 + MPMX20_03824 0.55 +0.1 4,026,439 + MPMX20_03824 0.55 -2.1 4,026,439 + MPMX20_03824 0.55 -1.3 4,026,447 - MPMX20_03824 0.56 -1.4 4,026,565 - MPMX20_03824 0.64 -1.0 4,026,606 - MPMX20_03824 0.66 -1.7 4,026,632 - MPMX20_03824 0.68 +1.1 4,026,660 - MPMX20_03824 0.70 -0.7 4,026,758 + MPMX20_03824 0.76 -1.2 4,026,769 + MPMX20_03824 0.77 -0.5 4,026,769 + MPMX20_03824 0.77 -2.7 4,026,820 + MPMX20_03824 0.81 +1.4 4,026,892 + MPMX20_03824 0.85 -2.3 4,026,950 + MPMX20_03824 0.89 +0.3 4,026,959 - MPMX20_03824 0.90 -0.8 4,026,961 - MPMX20_03824 0.90 -2.4 4,026,963 + MPMX20_03824 0.90 -2.2 4,026,963 + MPMX20_03824 0.90 +0.5 4,026,963 + MPMX20_03824 0.90 -3.4 4,026,971 - -1.3 4,026,971 - -2.0 4,026,979 - -2.7 4,027,003 - -1.0 4,027,021 - -1.4 4,027,034 + -0.9 4,027,047 - -1.5 4,027,061 + -1.2 4,027,061 + -0.9 4,027,086 + -0.3 4,027,103 - -0.3 4,027,117 + -0.9 4,027,139 + -1.8 4,027,177 + -3.2 4,027,230 - MPMX20_03825 0.12 -2.1 4,027,296 + MPMX20_03825 0.19 -2.6 4,027,317 + MPMX20_03825 0.22 -1.8 4,027,321 + MPMX20_03825 0.22 +1.1 4,027,329 - MPMX20_03825 0.23 -2.9 4,027,488 + MPMX20_03825 0.41 -0.4 4,027,496 - MPMX20_03825 0.42 -2.4 4,027,543 - MPMX20_03825 0.48 -1.4 4,027,589 + MPMX20_03825 0.53 -1.8 4,027,597 - MPMX20_03825 0.54 -1.2 4,027,597 - MPMX20_03825 0.54 -1.9 4,027,597 - MPMX20_03825 0.54 -1.5 4,027,597 - MPMX20_03825 0.54 -2.7 4,027,607 - MPMX20_03825 0.55 -0.5 4,027,607 - MPMX20_03825 0.55 -2.7 4,027,680 - MPMX20_03825 0.63 -1.7 4,027,701 + MPMX20_03825 0.66 +0.4 4,027,701 + MPMX20_03825 0.66 -3.3 4,027,701 + MPMX20_03825 0.66 -2.4 4,027,701 + MPMX20_03825 0.66 -3.4 4,027,701 + MPMX20_03825 0.66 -2.8 4,027,709 - MPMX20_03825 0.67 -3.9 4,027,734 + MPMX20_03825 0.69 +0.8 4,027,758 + MPMX20_03825 0.72 -1.3 4,027,801 - MPMX20_03825 0.77 +0.2 4,027,892 - MPMX20_03825 0.87 -3.9 4,027,918 + +2.1 4,027,977 + -0.7 4,028,009 + -0.6 4,028,009 + -0.6 4,028,045 + MPMX20_03826 0.16 -0.2 4,028,074 + MPMX20_03826 0.26 +0.1 4,028,079 + MPMX20_03826 0.28 -2.9 4,028,087 - MPMX20_03826 0.30 -2.0 4,028,087 - MPMX20_03826 0.30 -0.9
Or see this region's nucleotide sequence