Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03824

Experiment: Citric Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03822 and MPMX20_03823 overlap by 23 nucleotidesMPMX20_03823 and MPMX20_03824 are separated by 2 nucleotidesMPMX20_03824 and MPMX20_03825 are separated by 10 nucleotidesMPMX20_03825 and MPMX20_03826 overlap by 4 nucleotides MPMX20_03822: MPMX20_03822 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,024,269 to 4,025,078 _03822 MPMX20_03823: MPMX20_03823 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,025,056 to 4,025,595 _03823 MPMX20_03824: MPMX20_03824 - Citrate lyase alpha chain, at 4,025,598 to 4,027,115 _03824 MPMX20_03825: MPMX20_03825 - Citrate lyase subunit beta, at 4,027,126 to 4,028,001 _03825 MPMX20_03826: MPMX20_03826 - Citrate lyase acyl carrier protein, at 4,027,998 to 4,028,291 _03826 Position (kb) 4025 4026 4027 4028Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4024.615 kb on + strand, within MPMX20_03822at 4024.627 kb on + strand, within MPMX20_03822at 4024.630 kb on - strand, within MPMX20_03822at 4024.660 kb on - strand, within MPMX20_03822at 4024.669 kb on + strand, within MPMX20_03822at 4024.671 kb on - strand, within MPMX20_03822at 4024.671 kb on - strand, within MPMX20_03822at 4024.684 kb on + strand, within MPMX20_03822at 4024.800 kb on - strand, within MPMX20_03822at 4024.859 kb on - strand, within MPMX20_03822at 4024.866 kb on + strand, within MPMX20_03822at 4024.873 kb on - strand, within MPMX20_03822at 4024.874 kb on - strand, within MPMX20_03822at 4024.874 kb on - strand, within MPMX20_03822at 4024.875 kb on - strand, within MPMX20_03822at 4024.875 kb on - strand, within MPMX20_03822at 4024.877 kb on + strand, within MPMX20_03822at 4024.877 kb on + strand, within MPMX20_03822at 4024.918 kb on - strand, within MPMX20_03822at 4024.968 kb on - strand, within MPMX20_03822at 4024.968 kb on - strand, within MPMX20_03822at 4024.973 kb on - strand, within MPMX20_03822at 4024.982 kb on - strand, within MPMX20_03822at 4025.135 kb on + strand, within MPMX20_03823at 4025.148 kb on - strand, within MPMX20_03823at 4025.148 kb on - strand, within MPMX20_03823at 4025.179 kb on - strand, within MPMX20_03823at 4025.209 kb on + strand, within MPMX20_03823at 4025.214 kb on + strand, within MPMX20_03823at 4025.217 kb on - strand, within MPMX20_03823at 4025.217 kb on - strand, within MPMX20_03823at 4025.222 kb on - strand, within MPMX20_03823at 4025.256 kb on + strand, within MPMX20_03823at 4025.271 kb on + strand, within MPMX20_03823at 4025.279 kb on - strand, within MPMX20_03823at 4025.352 kb on + strand, within MPMX20_03823at 4025.359 kb on + strand, within MPMX20_03823at 4025.367 kb on - strand, within MPMX20_03823at 4025.372 kb on - strand, within MPMX20_03823at 4025.487 kb on + strand, within MPMX20_03823at 4025.495 kb on - strand, within MPMX20_03823at 4025.553 kb on + strandat 4025.567 kb on - strandat 4025.572 kb on - strandat 4025.603 kb on + strandat 4025.612 kb on + strandat 4025.612 kb on + strandat 4025.620 kb on - strandat 4025.620 kb on - strandat 4025.620 kb on - strandat 4025.670 kb on + strandat 4025.715 kb on + strandat 4025.832 kb on + strand, within MPMX20_03824at 4025.832 kb on - strand, within MPMX20_03824at 4025.834 kb on + strand, within MPMX20_03824at 4025.884 kb on - strand, within MPMX20_03824at 4025.899 kb on - strand, within MPMX20_03824at 4026.044 kb on + strand, within MPMX20_03824at 4026.061 kb on - strand, within MPMX20_03824at 4026.184 kb on - strand, within MPMX20_03824at 4026.184 kb on - strand, within MPMX20_03824at 4026.233 kb on + strand, within MPMX20_03824at 4026.233 kb on + strand, within MPMX20_03824at 4026.233 kb on + strand, within MPMX20_03824at 4026.439 kb on + strand, within MPMX20_03824at 4026.439 kb on + strand, within MPMX20_03824at 4026.439 kb on + strand, within MPMX20_03824at 4026.447 kb on - strand, within MPMX20_03824at 4026.565 kb on - strand, within MPMX20_03824at 4026.606 kb on - strand, within MPMX20_03824at 4026.632 kb on - strand, within MPMX20_03824at 4026.660 kb on - strand, within MPMX20_03824at 4026.758 kb on + strand, within MPMX20_03824at 4026.769 kb on + strand, within MPMX20_03824at 4026.769 kb on + strand, within MPMX20_03824at 4026.820 kb on + strand, within MPMX20_03824at 4026.892 kb on + strand, within MPMX20_03824at 4026.950 kb on + strand, within MPMX20_03824at 4026.959 kb on - strand, within MPMX20_03824at 4026.961 kb on - strand, within MPMX20_03824at 4026.963 kb on + strand, within MPMX20_03824at 4026.963 kb on + strand, within MPMX20_03824at 4026.963 kb on + strand, within MPMX20_03824at 4026.971 kb on - strandat 4026.971 kb on - strandat 4026.979 kb on - strandat 4027.003 kb on - strandat 4027.021 kb on - strandat 4027.034 kb on + strandat 4027.047 kb on - strandat 4027.061 kb on + strandat 4027.061 kb on + strandat 4027.086 kb on + strandat 4027.103 kb on - strandat 4027.117 kb on + strandat 4027.139 kb on + strandat 4027.177 kb on + strandat 4027.230 kb on - strand, within MPMX20_03825at 4027.296 kb on + strand, within MPMX20_03825at 4027.317 kb on + strand, within MPMX20_03825at 4027.321 kb on + strand, within MPMX20_03825at 4027.329 kb on - strand, within MPMX20_03825at 4027.488 kb on + strand, within MPMX20_03825at 4027.496 kb on - strand, within MPMX20_03825at 4027.543 kb on - strand, within MPMX20_03825at 4027.589 kb on + strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.597 kb on - strand, within MPMX20_03825at 4027.607 kb on - strand, within MPMX20_03825at 4027.607 kb on - strand, within MPMX20_03825at 4027.680 kb on - strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.701 kb on + strand, within MPMX20_03825at 4027.709 kb on - strand, within MPMX20_03825at 4027.734 kb on + strand, within MPMX20_03825at 4027.758 kb on + strand, within MPMX20_03825at 4027.801 kb on - strand, within MPMX20_03825at 4027.892 kb on - strand, within MPMX20_03825at 4027.918 kb on + strandat 4027.977 kb on + strandat 4028.009 kb on + strandat 4028.009 kb on + strandat 4028.045 kb on + strand, within MPMX20_03826at 4028.074 kb on + strand, within MPMX20_03826at 4028.079 kb on + strand, within MPMX20_03826at 4028.087 kb on - strand, within MPMX20_03826at 4028.087 kb on - strand, within MPMX20_03826

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
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4,024,615 + MPMX20_03822 0.43 -1.9
4,024,627 + MPMX20_03822 0.44 -1.2
4,024,630 - MPMX20_03822 0.45 -0.5
4,024,660 - MPMX20_03822 0.48 -1.5
4,024,669 + MPMX20_03822 0.49 -0.5
4,024,671 - MPMX20_03822 0.50 -1.1
4,024,671 - MPMX20_03822 0.50 -3.2
4,024,684 + MPMX20_03822 0.51 -2.0
4,024,800 - MPMX20_03822 0.66 -2.4
4,024,859 - MPMX20_03822 0.73 -0.2
4,024,866 + MPMX20_03822 0.74 -1.4
4,024,873 - MPMX20_03822 0.75 -0.6
4,024,874 - MPMX20_03822 0.75 -3.6
4,024,874 - MPMX20_03822 0.75 -0.5
4,024,875 - MPMX20_03822 0.75 +1.5
4,024,875 - MPMX20_03822 0.75 -1.1
4,024,877 + MPMX20_03822 0.75 -3.6
4,024,877 + MPMX20_03822 0.75 -0.5
4,024,918 - MPMX20_03822 0.80 +1.9
4,024,968 - MPMX20_03822 0.86 -2.7
4,024,968 - MPMX20_03822 0.86 -1.9
4,024,973 - MPMX20_03822 0.87 +0.5
4,024,982 - MPMX20_03822 0.88 -2.3
4,025,135 + MPMX20_03823 0.15 -1.9
4,025,148 - MPMX20_03823 0.17 +0.0
4,025,148 - MPMX20_03823 0.17 -0.5
4,025,179 - MPMX20_03823 0.23 -1.6
4,025,209 + MPMX20_03823 0.28 -0.7
4,025,214 + MPMX20_03823 0.29 -1.9
4,025,217 - MPMX20_03823 0.30 -0.4
4,025,217 - MPMX20_03823 0.30 +1.3
4,025,222 - MPMX20_03823 0.31 -1.2
4,025,256 + MPMX20_03823 0.37 -2.0
4,025,271 + MPMX20_03823 0.40 -1.5
4,025,279 - MPMX20_03823 0.41 -1.8
4,025,352 + MPMX20_03823 0.55 -1.3
4,025,359 + MPMX20_03823 0.56 -1.6
4,025,367 - MPMX20_03823 0.58 -1.4
4,025,372 - MPMX20_03823 0.59 -0.5
4,025,487 + MPMX20_03823 0.80 -0.7
4,025,495 - MPMX20_03823 0.81 -3.4
4,025,553 + -0.8
4,025,567 - -2.4
4,025,572 - +0.1
4,025,603 + -0.7
4,025,612 + +1.1
4,025,612 + +0.7
4,025,620 - +0.4
4,025,620 - -0.9
4,025,620 - -2.9
4,025,670 + -1.9
4,025,715 + -2.8
4,025,832 + MPMX20_03824 0.15 -1.8
4,025,832 - MPMX20_03824 0.15 -2.4
4,025,834 + MPMX20_03824 0.16 -3.1
4,025,884 - MPMX20_03824 0.19 -2.7
4,025,899 - MPMX20_03824 0.20 -2.3
4,026,044 + MPMX20_03824 0.29 -1.5
4,026,061 - MPMX20_03824 0.31 -1.2
4,026,184 - MPMX20_03824 0.39 -1.7
4,026,184 - MPMX20_03824 0.39 -0.6
4,026,233 + MPMX20_03824 0.42 -0.3
4,026,233 + MPMX20_03824 0.42 -1.6
4,026,233 + MPMX20_03824 0.42 -2.8
4,026,439 + MPMX20_03824 0.55 +0.1
4,026,439 + MPMX20_03824 0.55 -2.1
4,026,439 + MPMX20_03824 0.55 -1.3
4,026,447 - MPMX20_03824 0.56 -1.4
4,026,565 - MPMX20_03824 0.64 -1.0
4,026,606 - MPMX20_03824 0.66 -1.7
4,026,632 - MPMX20_03824 0.68 +1.1
4,026,660 - MPMX20_03824 0.70 -0.7
4,026,758 + MPMX20_03824 0.76 -1.2
4,026,769 + MPMX20_03824 0.77 -0.5
4,026,769 + MPMX20_03824 0.77 -2.7
4,026,820 + MPMX20_03824 0.81 +1.4
4,026,892 + MPMX20_03824 0.85 -2.3
4,026,950 + MPMX20_03824 0.89 +0.3
4,026,959 - MPMX20_03824 0.90 -0.8
4,026,961 - MPMX20_03824 0.90 -2.4
4,026,963 + MPMX20_03824 0.90 -2.2
4,026,963 + MPMX20_03824 0.90 +0.5
4,026,963 + MPMX20_03824 0.90 -3.4
4,026,971 - -1.3
4,026,971 - -2.0
4,026,979 - -2.7
4,027,003 - -1.0
4,027,021 - -1.4
4,027,034 + -0.9
4,027,047 - -1.5
4,027,061 + -1.2
4,027,061 + -0.9
4,027,086 + -0.3
4,027,103 - -0.3
4,027,117 + -0.9
4,027,139 + -1.8
4,027,177 + -3.2
4,027,230 - MPMX20_03825 0.12 -2.1
4,027,296 + MPMX20_03825 0.19 -2.6
4,027,317 + MPMX20_03825 0.22 -1.8
4,027,321 + MPMX20_03825 0.22 +1.1
4,027,329 - MPMX20_03825 0.23 -2.9
4,027,488 + MPMX20_03825 0.41 -0.4
4,027,496 - MPMX20_03825 0.42 -2.4
4,027,543 - MPMX20_03825 0.48 -1.4
4,027,589 + MPMX20_03825 0.53 -1.8
4,027,597 - MPMX20_03825 0.54 -1.2
4,027,597 - MPMX20_03825 0.54 -1.9
4,027,597 - MPMX20_03825 0.54 -1.5
4,027,597 - MPMX20_03825 0.54 -2.7
4,027,607 - MPMX20_03825 0.55 -0.5
4,027,607 - MPMX20_03825 0.55 -2.7
4,027,680 - MPMX20_03825 0.63 -1.7
4,027,701 + MPMX20_03825 0.66 +0.4
4,027,701 + MPMX20_03825 0.66 -3.3
4,027,701 + MPMX20_03825 0.66 -2.4
4,027,701 + MPMX20_03825 0.66 -3.4
4,027,701 + MPMX20_03825 0.66 -2.8
4,027,709 - MPMX20_03825 0.67 -3.9
4,027,734 + MPMX20_03825 0.69 +0.8
4,027,758 + MPMX20_03825 0.72 -1.3
4,027,801 - MPMX20_03825 0.77 +0.2
4,027,892 - MPMX20_03825 0.87 -3.9
4,027,918 + +2.1
4,027,977 + -0.7
4,028,009 + -0.6
4,028,009 + -0.6
4,028,045 + MPMX20_03826 0.16 -0.2
4,028,074 + MPMX20_03826 0.26 +0.1
4,028,079 + MPMX20_03826 0.28 -2.9
4,028,087 - MPMX20_03826 0.30 -2.0
4,028,087 - MPMX20_03826 0.30 -0.9

Or see this region's nucleotide sequence