Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04643

Experiment: D-Cellobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04641 and MPMX20_04642 are separated by 47 nucleotidesMPMX20_04642 and MPMX20_04643 are separated by 14 nucleotidesMPMX20_04643 and MPMX20_04644 are separated by 84 nucleotidesMPMX20_04644 and MPMX20_04645 are separated by 163 nucleotides MPMX20_04641: MPMX20_04641 - Phosphate transport system permease protein PstA, at 4,861,922 to 4,862,812 _04641 MPMX20_04642: MPMX20_04642 - Phosphate import ATP-binding protein PstB, at 4,862,860 to 4,863,633 _04642 MPMX20_04643: MPMX20_04643 - Phosphate-specific transport system accessory protein PhoU, at 4,863,648 to 4,864,373 _04643 MPMX20_04644: MPMX20_04644 - 6-phosphogluconate phosphatase, at 4,864,458 to 4,865,123 _04644 MPMX20_04645: MPMX20_04645 - Adenine permease AdeP, at 4,865,287 to 4,866,627 _04645 Position (kb) 4863 4864 4865Strain fitness (log2 ratio) -2 -1 0 1at 4862.727 kb on + strandat 4862.735 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.805 kb on - strandat 4863.047 kb on + strand, within MPMX20_04642at 4863.047 kb on + strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.264 kb on - strand, within MPMX20_04642at 4863.414 kb on - strand, within MPMX20_04642at 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4864.529 kb on - strand, within MPMX20_04644at 4864.672 kb on + strand, within MPMX20_04644at 4864.773 kb on + strand, within MPMX20_04644at 4864.805 kb on - strand, within MPMX20_04644at 4864.820 kb on - strand, within MPMX20_04644at 4864.870 kb on + strand, within MPMX20_04644at 4864.936 kb on - strand, within MPMX20_04644at 4864.956 kb on + strand, within MPMX20_04644at 4864.981 kb on + strand, within MPMX20_04644at 4864.981 kb on + strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4864.989 kb on - strand, within MPMX20_04644at 4865.013 kb on - strand, within MPMX20_04644at 4865.067 kb on - strandat 4865.074 kb on - strandat 4865.079 kb on - strandat 4865.081 kb on + strandat 4865.294 kb on + strandat 4865.308 kb on + strandat 4865.325 kb on + strandat 4865.325 kb on + strandat 4865.325 kb on + strandat 4865.328 kb on - strandat 4865.342 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
remove
4,862,727 + -0.4
4,862,735 + +1.1
4,862,742 + +1.7
4,862,742 + -0.6
4,862,742 + -1.1
4,862,742 + -0.4
4,862,742 + -1.3
4,862,805 - -0.1
4,863,047 + MPMX20_04642 0.24 -0.7
4,863,047 + MPMX20_04642 0.24 -0.7
4,863,055 - MPMX20_04642 0.25 -1.9
4,863,055 - MPMX20_04642 0.25 -1.2
4,863,055 - MPMX20_04642 0.25 -1.2
4,863,055 - MPMX20_04642 0.25 -1.2
4,863,264 - MPMX20_04642 0.52 -0.9
4,863,414 - MPMX20_04642 0.72 -1.0
4,863,686 + -0.9
4,863,686 + -0.7
4,863,686 + +0.1
4,863,686 + -1.1
4,863,686 + -0.4
4,864,529 - MPMX20_04644 0.11 +1.2
4,864,672 + MPMX20_04644 0.32 +1.0
4,864,773 + MPMX20_04644 0.47 -0.2
4,864,805 - MPMX20_04644 0.52 +0.3
4,864,820 - MPMX20_04644 0.54 -0.4
4,864,870 + MPMX20_04644 0.62 -0.6
4,864,936 - MPMX20_04644 0.72 +0.4
4,864,956 + MPMX20_04644 0.75 +0.2
4,864,981 + MPMX20_04644 0.79 -1.2
4,864,981 + MPMX20_04644 0.79 +0.9
4,864,989 - MPMX20_04644 0.80 -0.1
4,864,989 - MPMX20_04644 0.80 -1.3
4,864,989 - MPMX20_04644 0.80 +0.6
4,865,013 - MPMX20_04644 0.83 -0.2
4,865,067 - +0.3
4,865,074 - -1.1
4,865,079 - -1.1
4,865,081 + -1.3
4,865,294 + +0.3
4,865,308 + -0.2
4,865,325 + +0.1
4,865,325 + +0.4
4,865,325 + +0.9
4,865,328 - -0.1
4,865,342 + -2.1

Or see this region's nucleotide sequence