Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04568

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04567 and MPMX20_04568 are separated by 44 nucleotidesMPMX20_04568 and MPMX20_04569 are separated by 104 nucleotides MPMX20_04567: MPMX20_04567 - Melibiose permease, at 4,778,747 to 4,780,012 _04567 MPMX20_04568: MPMX20_04568 - Alpha-galactosidase, at 4,780,057 to 4,782,180 _04568 MPMX20_04569: MPMX20_04569 - HTH-type transcriptional regulator RafR, at 4,782,285 to 4,783,280 _04569 Position (kb) 4780 4781 4782 4783Strain fitness (log2 ratio) -2 -1 0 1 2at 4779.069 kb on - strand, within MPMX20_04567at 4779.154 kb on + strand, within MPMX20_04567at 4779.299 kb on + strand, within MPMX20_04567at 4779.307 kb on - strand, within MPMX20_04567at 4779.336 kb on - strand, within MPMX20_04567at 4779.352 kb on + strand, within MPMX20_04567at 4779.361 kb on - strand, within MPMX20_04567at 4779.361 kb on - strand, within MPMX20_04567at 4779.361 kb on - strand, within MPMX20_04567at 4779.361 kb on - strand, within MPMX20_04567at 4779.402 kb on + strand, within MPMX20_04567at 4779.402 kb on + strand, within MPMX20_04567at 4779.402 kb on + strand, within MPMX20_04567at 4779.410 kb on - strand, within MPMX20_04567at 4779.425 kb on - strand, within MPMX20_04567at 4779.515 kb on - strand, within MPMX20_04567at 4779.541 kb on + strand, within MPMX20_04567at 4779.541 kb on + strand, within MPMX20_04567at 4779.549 kb on - strand, within MPMX20_04567at 4779.593 kb on + strand, within MPMX20_04567at 4779.593 kb on + strand, within MPMX20_04567at 4779.617 kb on + strand, within MPMX20_04567at 4779.625 kb on - strand, within MPMX20_04567at 4779.746 kb on + strand, within MPMX20_04567at 4779.808 kb on + strand, within MPMX20_04567at 4779.824 kb on - strand, within MPMX20_04567at 4779.875 kb on + strand, within MPMX20_04567at 4779.876 kb on - strand, within MPMX20_04567at 4779.883 kb on - strand, within MPMX20_04567at 4779.966 kb on - strandat 4779.983 kb on + strandat 4780.048 kb on - strandat 4780.054 kb on - strandat 4780.183 kb on - strandat 4780.202 kb on + strandat 4780.217 kb on - strandat 4780.343 kb on - strand, within MPMX20_04568at 4780.352 kb on + strand, within MPMX20_04568at 4780.360 kb on - strand, within MPMX20_04568at 4780.360 kb on - strand, within MPMX20_04568at 4780.390 kb on - strand, within MPMX20_04568at 4780.404 kb on - strand, within MPMX20_04568at 4780.404 kb on - strand, within MPMX20_04568at 4780.406 kb on - strand, within MPMX20_04568at 4780.440 kb on + strand, within MPMX20_04568at 4780.453 kb on - strand, within MPMX20_04568at 4780.453 kb on - strand, within MPMX20_04568at 4780.468 kb on + strand, within MPMX20_04568at 4780.470 kb on + strand, within MPMX20_04568at 4780.499 kb on - strand, within MPMX20_04568at 4780.502 kb on + strand, within MPMX20_04568at 4780.640 kb on + strand, within MPMX20_04568at 4780.693 kb on + strand, within MPMX20_04568at 4780.693 kb on + strand, within MPMX20_04568at 4780.693 kb on + strand, within MPMX20_04568at 4780.701 kb on - strand, within MPMX20_04568at 4780.701 kb on - strand, within MPMX20_04568at 4780.760 kb on - strand, within MPMX20_04568at 4780.773 kb on + strand, within MPMX20_04568at 4780.816 kb on - strand, within MPMX20_04568at 4780.839 kb on + strand, within MPMX20_04568at 4780.863 kb on + strand, within MPMX20_04568at 4780.871 kb on - strand, within MPMX20_04568at 4780.975 kb on - strand, within MPMX20_04568at 4781.020 kb on + strand, within MPMX20_04568at 4781.025 kb on + strand, within MPMX20_04568at 4781.114 kb on - strand, within MPMX20_04568at 4781.149 kb on + strand, within MPMX20_04568at 4781.283 kb on - strand, within MPMX20_04568at 4781.296 kb on - strand, within MPMX20_04568at 4781.301 kb on - strand, within MPMX20_04568at 4781.334 kb on - strand, within MPMX20_04568at 4781.351 kb on + strand, within MPMX20_04568at 4781.372 kb on - strand, within MPMX20_04568at 4781.382 kb on - strand, within MPMX20_04568at 4781.406 kb on + strand, within MPMX20_04568at 4781.422 kb on - strand, within MPMX20_04568at 4781.465 kb on - strand, within MPMX20_04568at 4781.522 kb on - strand, within MPMX20_04568at 4781.538 kb on + strand, within MPMX20_04568at 4781.546 kb on + strand, within MPMX20_04568at 4781.546 kb on + strand, within MPMX20_04568at 4781.546 kb on + strand, within MPMX20_04568at 4781.552 kb on - strand, within MPMX20_04568at 4781.554 kb on - strand, within MPMX20_04568at 4781.850 kb on - strand, within MPMX20_04568at 4781.850 kb on - strand, within MPMX20_04568at 4781.881 kb on + strand, within MPMX20_04568at 4781.887 kb on + strand, within MPMX20_04568at 4781.907 kb on - strand, within MPMX20_04568at 4781.907 kb on - strand, within MPMX20_04568at 4781.935 kb on + strand, within MPMX20_04568at 4781.935 kb on + strand, within MPMX20_04568at 4781.935 kb on + strand, within MPMX20_04568at 4781.958 kb on - strand, within MPMX20_04568at 4782.101 kb on - strandat 4782.283 kb on + strandat 4782.309 kb on - strandat 4782.326 kb on + strandat 4782.333 kb on - strandat 4782.439 kb on + strand, within MPMX20_04569at 4782.457 kb on - strand, within MPMX20_04569at 4782.495 kb on + strand, within MPMX20_04569at 4782.522 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.551 kb on + strand, within MPMX20_04569at 4782.661 kb on + strand, within MPMX20_04569at 4782.698 kb on + strand, within MPMX20_04569at 4782.731 kb on + strand, within MPMX20_04569at 4782.812 kb on + strand, within MPMX20_04569at 4782.833 kb on + strand, within MPMX20_04569at 4782.837 kb on - strand, within MPMX20_04569at 4782.876 kb on - strand, within MPMX20_04569at 4782.936 kb on + strand, within MPMX20_04569at 4782.944 kb on - strand, within MPMX20_04569at 4782.944 kb on - strand, within MPMX20_04569at 4782.958 kb on - strand, within MPMX20_04569at 4783.059 kb on + strand, within MPMX20_04569at 4783.078 kb on - strand, within MPMX20_04569at 4783.094 kb on + strand, within MPMX20_04569at 4783.146 kb on - strand, within MPMX20_04569

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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4,779,069 - MPMX20_04567 0.25 -0.4
4,779,154 + MPMX20_04567 0.32 +1.6
4,779,299 + MPMX20_04567 0.44 +0.1
4,779,307 - MPMX20_04567 0.44 +1.2
4,779,336 - MPMX20_04567 0.47 -0.4
4,779,352 + MPMX20_04567 0.48 -0.9
4,779,361 - MPMX20_04567 0.48 -1.6
4,779,361 - MPMX20_04567 0.48 -1.3
4,779,361 - MPMX20_04567 0.48 -1.3
4,779,361 - MPMX20_04567 0.48 -0.6
4,779,402 + MPMX20_04567 0.52 +0.1
4,779,402 + MPMX20_04567 0.52 -0.2
4,779,402 + MPMX20_04567 0.52 +0.1
4,779,410 - MPMX20_04567 0.52 -0.4
4,779,425 - MPMX20_04567 0.54 -0.1
4,779,515 - MPMX20_04567 0.61 +1.1
4,779,541 + MPMX20_04567 0.63 +0.3
4,779,541 + MPMX20_04567 0.63 +0.6
4,779,549 - MPMX20_04567 0.63 -0.3
4,779,593 + MPMX20_04567 0.67 -0.9
4,779,593 + MPMX20_04567 0.67 -1.5
4,779,617 + MPMX20_04567 0.69 -0.9
4,779,625 - MPMX20_04567 0.69 +0.1
4,779,746 + MPMX20_04567 0.79 +1.0
4,779,808 + MPMX20_04567 0.84 +0.7
4,779,824 - MPMX20_04567 0.85 -0.4
4,779,875 + MPMX20_04567 0.89 -1.1
4,779,876 - MPMX20_04567 0.89 +1.4
4,779,883 - MPMX20_04567 0.90 -0.3
4,779,966 - +0.3
4,779,983 + +0.8
4,780,048 - -1.7
4,780,054 - -0.3
4,780,183 - +0.5
4,780,202 + +0.3
4,780,217 - -0.0
4,780,343 - MPMX20_04568 0.13 -0.2
4,780,352 + MPMX20_04568 0.14 +0.8
4,780,360 - MPMX20_04568 0.14 +1.1
4,780,360 - MPMX20_04568 0.14 -1.1
4,780,390 - MPMX20_04568 0.16 -0.8
4,780,404 - MPMX20_04568 0.16 -1.0
4,780,404 - MPMX20_04568 0.16 +0.8
4,780,406 - MPMX20_04568 0.16 +0.9
4,780,440 + MPMX20_04568 0.18 -0.4
4,780,453 - MPMX20_04568 0.19 -0.7
4,780,453 - MPMX20_04568 0.19 +0.2
4,780,468 + MPMX20_04568 0.19 -0.3
4,780,470 + MPMX20_04568 0.19 -0.4
4,780,499 - MPMX20_04568 0.21 +0.4
4,780,502 + MPMX20_04568 0.21 -1.2
4,780,640 + MPMX20_04568 0.27 +0.2
4,780,693 + MPMX20_04568 0.30 -1.9
4,780,693 + MPMX20_04568 0.30 -1.1
4,780,693 + MPMX20_04568 0.30 -0.2
4,780,701 - MPMX20_04568 0.30 -1.4
4,780,701 - MPMX20_04568 0.30 +0.7
4,780,760 - MPMX20_04568 0.33 +0.6
4,780,773 + MPMX20_04568 0.34 +0.9
4,780,816 - MPMX20_04568 0.36 -1.0
4,780,839 + MPMX20_04568 0.37 -0.1
4,780,863 + MPMX20_04568 0.38 -0.3
4,780,871 - MPMX20_04568 0.38 +0.8
4,780,975 - MPMX20_04568 0.43 +0.2
4,781,020 + MPMX20_04568 0.45 -1.7
4,781,025 + MPMX20_04568 0.46 +1.8
4,781,114 - MPMX20_04568 0.50 -1.0
4,781,149 + MPMX20_04568 0.51 +1.0
4,781,283 - MPMX20_04568 0.58 -1.1
4,781,296 - MPMX20_04568 0.58 -0.3
4,781,301 - MPMX20_04568 0.59 +0.6
4,781,334 - MPMX20_04568 0.60 +0.2
4,781,351 + MPMX20_04568 0.61 +0.1
4,781,372 - MPMX20_04568 0.62 -0.3
4,781,382 - MPMX20_04568 0.62 +0.9
4,781,406 + MPMX20_04568 0.64 +2.1
4,781,422 - MPMX20_04568 0.64 +0.4
4,781,465 - MPMX20_04568 0.66 +0.9
4,781,522 - MPMX20_04568 0.69 +0.3
4,781,538 + MPMX20_04568 0.70 +0.2
4,781,546 + MPMX20_04568 0.70 -0.2
4,781,546 + MPMX20_04568 0.70 -0.8
4,781,546 + MPMX20_04568 0.70 -0.7
4,781,552 - MPMX20_04568 0.70 +0.2
4,781,554 - MPMX20_04568 0.70 +0.2
4,781,850 - MPMX20_04568 0.84 +0.7
4,781,850 - MPMX20_04568 0.84 +0.0
4,781,881 + MPMX20_04568 0.86 +0.7
4,781,887 + MPMX20_04568 0.86 -0.1
4,781,907 - MPMX20_04568 0.87 -0.4
4,781,907 - MPMX20_04568 0.87 -0.3
4,781,935 + MPMX20_04568 0.88 +0.2
4,781,935 + MPMX20_04568 0.88 +0.1
4,781,935 + MPMX20_04568 0.88 +0.2
4,781,958 - MPMX20_04568 0.90 -0.2
4,782,101 - -0.4
4,782,283 + -0.2
4,782,309 - +1.8
4,782,326 + +1.0
4,782,333 - +0.2
4,782,439 + MPMX20_04569 0.15 +0.7
4,782,457 - MPMX20_04569 0.17 -0.2
4,782,495 + MPMX20_04569 0.21 +1.2
4,782,522 + MPMX20_04569 0.24 -0.2
4,782,541 + MPMX20_04569 0.26 +0.9
4,782,541 + MPMX20_04569 0.26 +1.3
4,782,541 + MPMX20_04569 0.26 -0.1
4,782,551 + MPMX20_04569 0.27 +0.2
4,782,661 + MPMX20_04569 0.38 -0.3
4,782,698 + MPMX20_04569 0.41 +0.2
4,782,731 + MPMX20_04569 0.45 -0.4
4,782,812 + MPMX20_04569 0.53 +1.4
4,782,833 + MPMX20_04569 0.55 +0.2
4,782,837 - MPMX20_04569 0.55 +0.8
4,782,876 - MPMX20_04569 0.59 +1.1
4,782,936 + MPMX20_04569 0.65 +0.9
4,782,944 - MPMX20_04569 0.66 -0.1
4,782,944 - MPMX20_04569 0.66 -0.2
4,782,958 - MPMX20_04569 0.68 +0.7
4,783,059 + MPMX20_04569 0.78 -0.5
4,783,078 - MPMX20_04569 0.80 +0.0
4,783,094 + MPMX20_04569 0.81 +0.5
4,783,146 - MPMX20_04569 0.86 +1.3

Or see this region's nucleotide sequence