Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04262

Experiment: D-Cellobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04261 and MPMX20_04262 overlap by 4 nucleotidesMPMX20_04262 and MPMX20_04263 are separated by 86 nucleotidesMPMX20_04263 and MPMX20_04264 are separated by 30 nucleotides MPMX20_04261: MPMX20_04261 - hypothetical protein, at 4,442,693 to 4,444,780 _04261 MPMX20_04262: MPMX20_04262 - Acetylornithine/succinyldiaminopimelate aminotransferase, at 4,444,777 to 4,445,997 _04262 MPMX20_04263: MPMX20_04263 - Aminodeoxychorismate synthase component 2, at 4,446,084 to 4,446,647 _04263 MPMX20_04264: MPMX20_04264 - putative protein adenylyltransferase Fic, at 4,446,678 to 4,447,280 _04264 Position (kb) 4444 4445 4446Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4443.784 kb on + strand, within MPMX20_04261at 4443.792 kb on - strand, within MPMX20_04261at 4443.792 kb on - strand, within MPMX20_04261at 4443.802 kb on - strand, within MPMX20_04261at 4443.981 kb on + strand, within MPMX20_04261at 4444.081 kb on - strand, within MPMX20_04261at 4444.096 kb on + strand, within MPMX20_04261at 4444.111 kb on - strand, within MPMX20_04261at 4444.112 kb on - strand, within MPMX20_04261at 4444.209 kb on - strand, within MPMX20_04261at 4444.260 kb on - strand, within MPMX20_04261at 4444.333 kb on + strand, within MPMX20_04261at 4444.416 kb on + strand, within MPMX20_04261at 4444.423 kb on + strand, within MPMX20_04261at 4444.423 kb on + strand, within MPMX20_04261at 4444.423 kb on + strand, within MPMX20_04261at 4444.431 kb on - strand, within MPMX20_04261at 4444.444 kb on + strand, within MPMX20_04261at 4444.468 kb on - strand, within MPMX20_04261at 4444.491 kb on + strand, within MPMX20_04261at 4444.557 kb on - strand, within MPMX20_04261at 4444.650 kb on + strandat 4444.658 kb on - strandat 4444.684 kb on + strandat 4444.684 kb on + strandat 4444.701 kb on + strandat 4444.740 kb on + strandat 4444.816 kb on + strandat 4444.868 kb on - strandat 4444.951 kb on - strand, within MPMX20_04262at 4444.963 kb on - strand, within MPMX20_04262at 4444.983 kb on - strand, within MPMX20_04262at 4445.010 kb on - strand, within MPMX20_04262at 4445.079 kb on + strand, within MPMX20_04262at 4445.087 kb on - strand, within MPMX20_04262at 4445.098 kb on + strand, within MPMX20_04262at 4445.242 kb on + strand, within MPMX20_04262at 4445.250 kb on - strand, within MPMX20_04262at 4445.300 kb on - strand, within MPMX20_04262at 4445.511 kb on + strand, within MPMX20_04262at 4445.529 kb on + strand, within MPMX20_04262at 4445.689 kb on + strand, within MPMX20_04262at 4445.788 kb on - strand, within MPMX20_04262at 4445.811 kb on + strand, within MPMX20_04262at 4445.819 kb on - strand, within MPMX20_04262at 4445.849 kb on - strand, within MPMX20_04262at 4446.118 kb on - strandat 4446.133 kb on - strandat 4446.165 kb on - strand, within MPMX20_04263at 4446.187 kb on + strand, within MPMX20_04263at 4446.221 kb on + strand, within MPMX20_04263at 4446.247 kb on - strand, within MPMX20_04263at 4446.260 kb on + strand, within MPMX20_04263at 4446.291 kb on + strand, within MPMX20_04263at 4446.303 kb on + strand, within MPMX20_04263at 4446.325 kb on - strand, within MPMX20_04263at 4446.353 kb on + strand, within MPMX20_04263at 4446.404 kb on - strand, within MPMX20_04263at 4446.405 kb on - strand, within MPMX20_04263at 4446.413 kb on - strand, within MPMX20_04263at 4446.500 kb on + strand, within MPMX20_04263at 4446.506 kb on + strand, within MPMX20_04263at 4446.531 kb on + strand, within MPMX20_04263at 4446.572 kb on + strand, within MPMX20_04263at 4446.572 kb on + strand, within MPMX20_04263at 4446.605 kb on + strandat 4446.605 kb on + strandat 4446.606 kb on - strandat 4446.683 kb on - strandat 4446.748 kb on + strand, within MPMX20_04264at 4446.791 kb on + strand, within MPMX20_04264at 4446.848 kb on + strand, within MPMX20_04264at 4446.874 kb on + strand, within MPMX20_04264at 4446.940 kb on + strand, within MPMX20_04264at 4446.959 kb on - strand, within MPMX20_04264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
remove
4,443,784 + MPMX20_04261 0.52 +0.8
4,443,792 - MPMX20_04261 0.53 -0.1
4,443,792 - MPMX20_04261 0.53 -0.3
4,443,802 - MPMX20_04261 0.53 +1.5
4,443,981 + MPMX20_04261 0.62 +0.5
4,444,081 - MPMX20_04261 0.66 +0.6
4,444,096 + MPMX20_04261 0.67 +0.1
4,444,111 - MPMX20_04261 0.68 +0.9
4,444,112 - MPMX20_04261 0.68 +0.6
4,444,209 - MPMX20_04261 0.73 -0.2
4,444,260 - MPMX20_04261 0.75 +0.7
4,444,333 + MPMX20_04261 0.79 +1.8
4,444,416 + MPMX20_04261 0.83 +0.2
4,444,423 + MPMX20_04261 0.83 +2.3
4,444,423 + MPMX20_04261 0.83 +1.0
4,444,423 + MPMX20_04261 0.83 -1.5
4,444,431 - MPMX20_04261 0.83 +0.8
4,444,444 + MPMX20_04261 0.84 -0.7
4,444,468 - MPMX20_04261 0.85 +0.0
4,444,491 + MPMX20_04261 0.86 +0.2
4,444,557 - MPMX20_04261 0.89 +0.6
4,444,650 + -1.2
4,444,658 - -0.0
4,444,684 + +0.6
4,444,684 + +0.5
4,444,701 + -2.9
4,444,740 + +0.0
4,444,816 + -1.5
4,444,868 - -1.0
4,444,951 - MPMX20_04262 0.14 -0.3
4,444,963 - MPMX20_04262 0.15 -0.7
4,444,983 - MPMX20_04262 0.17 -2.5
4,445,010 - MPMX20_04262 0.19 -3.8
4,445,079 + MPMX20_04262 0.25 -2.2
4,445,087 - MPMX20_04262 0.25 -2.0
4,445,098 + MPMX20_04262 0.26 -2.3
4,445,242 + MPMX20_04262 0.38 -2.5
4,445,250 - MPMX20_04262 0.39 -2.9
4,445,300 - MPMX20_04262 0.43 -3.0
4,445,511 + MPMX20_04262 0.60 -2.4
4,445,529 + MPMX20_04262 0.62 -1.5
4,445,689 + MPMX20_04262 0.75 -1.6
4,445,788 - MPMX20_04262 0.83 -1.7
4,445,811 + MPMX20_04262 0.85 -1.5
4,445,819 - MPMX20_04262 0.85 -1.6
4,445,849 - MPMX20_04262 0.88 -1.7
4,446,118 - -0.1
4,446,133 - +0.6
4,446,165 - MPMX20_04263 0.14 -0.5
4,446,187 + MPMX20_04263 0.18 +0.2
4,446,221 + MPMX20_04263 0.24 +0.8
4,446,247 - MPMX20_04263 0.29 +0.8
4,446,260 + MPMX20_04263 0.31 -0.2
4,446,291 + MPMX20_04263 0.37 -1.4
4,446,303 + MPMX20_04263 0.39 -0.2
4,446,325 - MPMX20_04263 0.43 +0.0
4,446,353 + MPMX20_04263 0.48 +0.8
4,446,404 - MPMX20_04263 0.57 +1.9
4,446,405 - MPMX20_04263 0.57 -2.3
4,446,413 - MPMX20_04263 0.58 -1.5
4,446,500 + MPMX20_04263 0.74 -1.4
4,446,506 + MPMX20_04263 0.75 +0.8
4,446,531 + MPMX20_04263 0.79 -1.4
4,446,572 + MPMX20_04263 0.87 -1.2
4,446,572 + MPMX20_04263 0.87 +0.2
4,446,605 + -1.3
4,446,605 + -0.1
4,446,606 - +0.5
4,446,683 - -0.8
4,446,748 + MPMX20_04264 0.12 +0.7
4,446,791 + MPMX20_04264 0.19 +0.2
4,446,848 + MPMX20_04264 0.28 +0.2
4,446,874 + MPMX20_04264 0.33 -1.3
4,446,940 + MPMX20_04264 0.43 +0.6
4,446,959 - MPMX20_04264 0.47 +1.6

Or see this region's nucleotide sequence