Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04428 and MPMX20_04429 are separated by 182 nucleotides MPMX20_04429 and MPMX20_04430 are separated by 38 nucleotides MPMX20_04430 and MPMX20_04431 are separated by 71 nucleotides MPMX20_04431 and MPMX20_04432 are separated by 356 nucleotides MPMX20_04432 and MPMX20_04433 are separated by 10 nucleotides
MPMX20_04428: MPMX20_04428 - 23S ribosomal RNA, at 4,628,556 to 4,631,458
_04428
MPMX20_04429: MPMX20_04429 - tRNA-Ala, at 4,631,641 to 4,631,716
_04429
MPMX20_04430: MPMX20_04430 - tRNA-Ile, at 4,631,755 to 4,631,831
_04430
MPMX20_04431: MPMX20_04431 - 16S ribosomal RNA, at 4,631,903 to 4,633,438
_04431
MPMX20_04432: MPMX20_04432 - Protoporphyrinogen IX dehydrogenase [menaquinone], at 4,633,795 to 4,634,340
_04432
MPMX20_04433: MPMX20_04433 - Trk system potassium uptake protein TrkH, at 4,634,351 to 4,635,802
_04433
Position (kb) 4631
4632
4633
4634 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4634.347 kb on + strand at 4634.347 kb on + strand at 4634.365 kb on + strand at 4634.365 kb on + strand at 4634.378 kb on - strand at 4634.389 kb on + strand at 4634.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 4,634,347 + +0.5 4,634,347 + -0.5 4,634,365 + -1.4 4,634,365 + -2.0 4,634,378 - -2.4 4,634,389 + -2.8 4,634,396 + -2.6
Or see this region's nucleotide sequence