Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01795

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01794 and MPMX20_01795 are separated by 149 nucleotidesMPMX20_01795 and MPMX20_01796 are separated by 148 nucleotides MPMX20_01794: MPMX20_01794 - putative L,D-transpeptidase YcfS, at 1,884,338 to 1,885,303 _01794 MPMX20_01795: MPMX20_01795 - Transcription-repair-coupling factor, at 1,885,453 to 1,888,899 _01795 MPMX20_01796: MPMX20_01796 - Inner membrane protein YcfT, at 1,889,048 to 1,890,121 _01796 Position (kb) 1885 1886 1887 1888 1889Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1884.457 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.538 kb on + strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.546 kb on - strand, within MPMX20_01794at 1884.556 kb on + strand, within MPMX20_01794at 1884.572 kb on - strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.646 kb on + strand, within MPMX20_01794at 1884.761 kb on + strand, within MPMX20_01794at 1884.769 kb on - strand, within MPMX20_01794at 1884.798 kb on - strand, within MPMX20_01794at 1884.829 kb on - strand, within MPMX20_01794at 1884.837 kb on + strand, within MPMX20_01794at 1884.854 kb on - strand, within MPMX20_01794at 1884.878 kb on - strand, within MPMX20_01794at 1884.878 kb on - strand, within MPMX20_01794at 1884.880 kb on + strand, within MPMX20_01794at 1884.888 kb on - strand, within MPMX20_01794at 1884.892 kb on + strand, within MPMX20_01794at 1884.900 kb on + strand, within MPMX20_01794at 1884.905 kb on + strand, within MPMX20_01794at 1884.910 kb on + strand, within MPMX20_01794at 1884.918 kb on - strand, within MPMX20_01794at 1884.918 kb on - strand, within MPMX20_01794at 1884.933 kb on - strand, within MPMX20_01794at 1884.962 kb on - strand, within MPMX20_01794at 1884.984 kb on - strand, within MPMX20_01794at 1884.989 kb on - strand, within MPMX20_01794at 1885.037 kb on + strand, within MPMX20_01794at 1885.045 kb on - strand, within MPMX20_01794at 1885.080 kb on + strand, within MPMX20_01794at 1885.082 kb on - strand, within MPMX20_01794at 1885.275 kb on - strandat 1885.275 kb on - strandat 1885.275 kb on - strandat 1885.470 kb on + strandat 1885.491 kb on + strandat 1885.660 kb on + strandat 1885.744 kb on - strandat 1885.833 kb on - strand, within MPMX20_01795at 1885.869 kb on + strand, within MPMX20_01795at 1885.898 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1885.976 kb on - strand, within MPMX20_01795at 1886.016 kb on - strand, within MPMX20_01795at 1886.016 kb on - strand, within MPMX20_01795at 1886.046 kb on + strand, within MPMX20_01795at 1886.165 kb on + strand, within MPMX20_01795at 1886.171 kb on + strand, within MPMX20_01795at 1886.222 kb on + strand, within MPMX20_01795at 1886.302 kb on + strand, within MPMX20_01795at 1886.302 kb on + strand, within MPMX20_01795at 1886.447 kb on + strand, within MPMX20_01795at 1886.455 kb on - strand, within MPMX20_01795at 1886.464 kb on + strand, within MPMX20_01795at 1886.482 kb on - strand, within MPMX20_01795at 1886.496 kb on - strand, within MPMX20_01795at 1886.501 kb on - strand, within MPMX20_01795at 1886.583 kb on + strand, within MPMX20_01795at 1886.640 kb on + strand, within MPMX20_01795at 1886.682 kb on + strand, within MPMX20_01795at 1886.682 kb on + strand, within MPMX20_01795at 1886.694 kb on + strand, within MPMX20_01795at 1886.728 kb on + strand, within MPMX20_01795at 1886.728 kb on + strand, within MPMX20_01795at 1886.806 kb on - strand, within MPMX20_01795at 1886.806 kb on - strand, within MPMX20_01795at 1886.808 kb on + strand, within MPMX20_01795at 1886.854 kb on - strand, within MPMX20_01795at 1886.922 kb on + strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.930 kb on - strand, within MPMX20_01795at 1886.938 kb on - strand, within MPMX20_01795at 1887.025 kb on - strand, within MPMX20_01795at 1887.063 kb on + strand, within MPMX20_01795at 1887.085 kb on - strand, within MPMX20_01795at 1887.125 kb on + strand, within MPMX20_01795at 1887.133 kb on - strand, within MPMX20_01795at 1887.230 kb on + strand, within MPMX20_01795at 1887.238 kb on - strand, within MPMX20_01795at 1887.294 kb on - strand, within MPMX20_01795at 1887.296 kb on - strand, within MPMX20_01795at 1887.352 kb on - strand, within MPMX20_01795at 1887.408 kb on + strand, within MPMX20_01795at 1887.418 kb on - strand, within MPMX20_01795at 1887.426 kb on + strand, within MPMX20_01795at 1887.488 kb on - strand, within MPMX20_01795at 1887.601 kb on + strand, within MPMX20_01795at 1887.609 kb on + strand, within MPMX20_01795at 1887.609 kb on - strand, within MPMX20_01795at 1887.655 kb on - strand, within MPMX20_01795at 1887.688 kb on - strand, within MPMX20_01795at 1887.703 kb on + strand, within MPMX20_01795at 1887.716 kb on - strand, within MPMX20_01795at 1887.739 kb on + strand, within MPMX20_01795at 1887.747 kb on - strand, within MPMX20_01795at 1887.886 kb on - strand, within MPMX20_01795at 1887.922 kb on - strand, within MPMX20_01795at 1887.967 kb on + strand, within MPMX20_01795at 1887.987 kb on + strand, within MPMX20_01795at 1888.091 kb on + strand, within MPMX20_01795at 1888.091 kb on + strand, within MPMX20_01795at 1888.161 kb on + strand, within MPMX20_01795at 1888.328 kb on - strand, within MPMX20_01795at 1888.391 kb on - strand, within MPMX20_01795at 1888.462 kb on + strand, within MPMX20_01795at 1888.495 kb on + strand, within MPMX20_01795at 1888.538 kb on - strand, within MPMX20_01795at 1888.540 kb on - strand, within MPMX20_01795at 1888.557 kb on + strandat 1888.565 kb on - strandat 1888.565 kb on - strandat 1888.565 kb on - strandat 1888.626 kb on + strandat 1888.642 kb on + strandat 1888.653 kb on + strandat 1888.672 kb on - strandat 1888.782 kb on - strandat 1888.898 kb on - strandat 1888.906 kb on + strandat 1888.934 kb on + strandat 1888.942 kb on - strandat 1889.096 kb on - strandat 1889.100 kb on + strandat 1889.102 kb on + strandat 1889.118 kb on - strandat 1889.121 kb on + strandat 1889.123 kb on - strandat 1889.123 kb on - strandat 1889.131 kb on + strandat 1889.131 kb on + strandat 1889.139 kb on - strandat 1889.148 kb on + strandat 1889.153 kb on + strandat 1889.199 kb on + strand, within MPMX20_01796at 1889.202 kb on - strand, within MPMX20_01796at 1889.207 kb on - strand, within MPMX20_01796at 1889.220 kb on + strand, within MPMX20_01796at 1889.228 kb on - strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.245 kb on + strand, within MPMX20_01796at 1889.253 kb on - strand, within MPMX20_01796at 1889.253 kb on - strand, within MPMX20_01796at 1889.293 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.334 kb on + strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.342 kb on - strand, within MPMX20_01796at 1889.344 kb on + strand, within MPMX20_01796at 1889.458 kb on + strand, within MPMX20_01796at 1889.495 kb on + strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.513 kb on - strand, within MPMX20_01796at 1889.563 kb on - strand, within MPMX20_01796at 1889.637 kb on - strand, within MPMX20_01796at 1889.646 kb on + strand, within MPMX20_01796at 1889.654 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.664 kb on - strand, within MPMX20_01796at 1889.674 kb on + strand, within MPMX20_01796at 1889.795 kb on - strand, within MPMX20_01796at 1889.809 kb on + strand, within MPMX20_01796at 1889.839 kb on + strand, within MPMX20_01796at 1889.864 kb on - strand, within MPMX20_01796at 1889.877 kb on + strand, within MPMX20_01796

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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1,884,457 + MPMX20_01794 0.12 -0.2
1,884,538 + MPMX20_01794 0.21 +0.8
1,884,538 + MPMX20_01794 0.21 +1.3
1,884,538 + MPMX20_01794 0.21 +0.5
1,884,538 + MPMX20_01794 0.21 -0.2
1,884,538 + MPMX20_01794 0.21 +0.1
1,884,538 + MPMX20_01794 0.21 +0.2
1,884,538 + MPMX20_01794 0.21 -0.0
1,884,538 + MPMX20_01794 0.21 -1.8
1,884,546 - MPMX20_01794 0.22 +0.4
1,884,546 - MPMX20_01794 0.22 -2.2
1,884,546 - MPMX20_01794 0.22 +0.6
1,884,546 - MPMX20_01794 0.22 -0.8
1,884,546 - MPMX20_01794 0.22 -0.2
1,884,546 - MPMX20_01794 0.22 +0.4
1,884,546 - MPMX20_01794 0.22 -0.8
1,884,546 - MPMX20_01794 0.22 +0.6
1,884,546 - MPMX20_01794 0.22 -0.0
1,884,546 - MPMX20_01794 0.22 -2.6
1,884,556 + MPMX20_01794 0.23 +0.5
1,884,572 - MPMX20_01794 0.24 +0.1
1,884,646 + MPMX20_01794 0.32 +0.2
1,884,646 + MPMX20_01794 0.32 -0.7
1,884,646 + MPMX20_01794 0.32 +1.2
1,884,761 + MPMX20_01794 0.44 -0.7
1,884,769 - MPMX20_01794 0.45 -1.4
1,884,798 - MPMX20_01794 0.48 +1.2
1,884,829 - MPMX20_01794 0.51 +0.2
1,884,837 + MPMX20_01794 0.52 -1.2
1,884,854 - MPMX20_01794 0.53 +0.6
1,884,878 - MPMX20_01794 0.56 -0.4
1,884,878 - MPMX20_01794 0.56 +1.8
1,884,880 + MPMX20_01794 0.56 +1.2
1,884,888 - MPMX20_01794 0.57 -1.1
1,884,892 + MPMX20_01794 0.57 -0.2
1,884,900 + MPMX20_01794 0.58 +0.5
1,884,905 + MPMX20_01794 0.59 +0.3
1,884,910 + MPMX20_01794 0.59 -0.5
1,884,918 - MPMX20_01794 0.60 -0.3
1,884,918 - MPMX20_01794 0.60 +0.9
1,884,933 - MPMX20_01794 0.62 +0.8
1,884,962 - MPMX20_01794 0.65 -0.3
1,884,984 - MPMX20_01794 0.67 +0.6
1,884,989 - MPMX20_01794 0.67 +0.4
1,885,037 + MPMX20_01794 0.72 +0.5
1,885,045 - MPMX20_01794 0.73 +0.9
1,885,080 + MPMX20_01794 0.77 +1.1
1,885,082 - MPMX20_01794 0.77 -0.1
1,885,275 - -0.7
1,885,275 - -0.7
1,885,275 - -1.8
1,885,470 + +0.8
1,885,491 + +0.5
1,885,660 + +0.9
1,885,744 - +2.9
1,885,833 - MPMX20_01795 0.11 +0.1
1,885,869 + MPMX20_01795 0.12 +1.9
1,885,898 - MPMX20_01795 0.13 +1.0
1,885,976 - MPMX20_01795 0.15 +2.4
1,885,976 - MPMX20_01795 0.15 +0.7
1,885,976 - MPMX20_01795 0.15 +2.6
1,886,016 - MPMX20_01795 0.16 +1.0
1,886,016 - MPMX20_01795 0.16 +3.0
1,886,046 + MPMX20_01795 0.17 +1.9
1,886,165 + MPMX20_01795 0.21 -0.1
1,886,171 + MPMX20_01795 0.21 +0.9
1,886,222 + MPMX20_01795 0.22 +1.9
1,886,302 + MPMX20_01795 0.25 +0.1
1,886,302 + MPMX20_01795 0.25 +1.4
1,886,447 + MPMX20_01795 0.29 +0.8
1,886,455 - MPMX20_01795 0.29 -0.3
1,886,464 + MPMX20_01795 0.29 +2.3
1,886,482 - MPMX20_01795 0.30 +1.3
1,886,496 - MPMX20_01795 0.30 +1.6
1,886,501 - MPMX20_01795 0.30 +2.0
1,886,583 + MPMX20_01795 0.33 +2.6
1,886,640 + MPMX20_01795 0.34 +1.7
1,886,682 + MPMX20_01795 0.36 +1.2
1,886,682 + MPMX20_01795 0.36 +1.6
1,886,694 + MPMX20_01795 0.36 +2.1
1,886,728 + MPMX20_01795 0.37 +1.1
1,886,728 + MPMX20_01795 0.37 +3.0
1,886,806 - MPMX20_01795 0.39 +2.1
1,886,806 - MPMX20_01795 0.39 +2.9
1,886,808 + MPMX20_01795 0.39 +1.7
1,886,854 - MPMX20_01795 0.41 +2.5
1,886,922 + MPMX20_01795 0.43 -0.2
1,886,930 - MPMX20_01795 0.43 +2.7
1,886,930 - MPMX20_01795 0.43 +2.4
1,886,930 - MPMX20_01795 0.43 +1.6
1,886,938 - MPMX20_01795 0.43 +2.0
1,887,025 - MPMX20_01795 0.46 +2.7
1,887,063 + MPMX20_01795 0.47 +1.2
1,887,085 - MPMX20_01795 0.47 +2.0
1,887,125 + MPMX20_01795 0.49 +1.8
1,887,133 - MPMX20_01795 0.49 +1.1
1,887,230 + MPMX20_01795 0.52 +2.5
1,887,238 - MPMX20_01795 0.52 +1.4
1,887,294 - MPMX20_01795 0.53 +1.1
1,887,296 - MPMX20_01795 0.53 +3.6
1,887,352 - MPMX20_01795 0.55 +1.6
1,887,408 + MPMX20_01795 0.57 +0.6
1,887,418 - MPMX20_01795 0.57 +2.4
1,887,426 + MPMX20_01795 0.57 +2.5
1,887,488 - MPMX20_01795 0.59 +1.5
1,887,601 + MPMX20_01795 0.62 +0.8
1,887,609 + MPMX20_01795 0.63 +1.1
1,887,609 - MPMX20_01795 0.63 +0.2
1,887,655 - MPMX20_01795 0.64 +2.0
1,887,688 - MPMX20_01795 0.65 +2.0
1,887,703 + MPMX20_01795 0.65 +1.2
1,887,716 - MPMX20_01795 0.66 +1.4
1,887,739 + MPMX20_01795 0.66 +2.7
1,887,747 - MPMX20_01795 0.67 +1.5
1,887,886 - MPMX20_01795 0.71 +1.5
1,887,922 - MPMX20_01795 0.72 +2.6
1,887,967 + MPMX20_01795 0.73 +1.1
1,887,987 + MPMX20_01795 0.74 +1.7
1,888,091 + MPMX20_01795 0.77 +0.9
1,888,091 + MPMX20_01795 0.77 -0.3
1,888,161 + MPMX20_01795 0.79 +1.7
1,888,328 - MPMX20_01795 0.83 +0.6
1,888,391 - MPMX20_01795 0.85 +2.2
1,888,462 + MPMX20_01795 0.87 +1.2
1,888,495 + MPMX20_01795 0.88 +0.8
1,888,538 - MPMX20_01795 0.89 +2.9
1,888,540 - MPMX20_01795 0.90 +0.3
1,888,557 + +1.6
1,888,565 - +0.7
1,888,565 - +1.1
1,888,565 - +0.9
1,888,626 + +1.5
1,888,642 + +3.3
1,888,653 + +1.1
1,888,672 - +0.9
1,888,782 - +2.1
1,888,898 - +0.4
1,888,906 + +0.6
1,888,934 + +0.0
1,888,942 - +1.5
1,889,096 - +0.4
1,889,100 + +0.6
1,889,102 + -0.6
1,889,118 - +1.3
1,889,121 + +0.2
1,889,123 - -0.4
1,889,123 - +0.8
1,889,131 + +0.3
1,889,131 + +0.0
1,889,139 - -1.0
1,889,148 + -0.6
1,889,153 + +0.8
1,889,199 + MPMX20_01796 0.14 +1.1
1,889,202 - MPMX20_01796 0.14 +0.3
1,889,207 - MPMX20_01796 0.15 -0.3
1,889,220 + MPMX20_01796 0.16 +1.1
1,889,228 - MPMX20_01796 0.17 +0.6
1,889,245 + MPMX20_01796 0.18 +0.9
1,889,245 + MPMX20_01796 0.18 +1.3
1,889,245 + MPMX20_01796 0.18 +1.4
1,889,245 + MPMX20_01796 0.18 +0.8
1,889,245 + MPMX20_01796 0.18 -0.8
1,889,245 + MPMX20_01796 0.18 -0.3
1,889,253 - MPMX20_01796 0.19 -0.2
1,889,253 - MPMX20_01796 0.19 -0.2
1,889,293 + MPMX20_01796 0.23 +0.5
1,889,334 + MPMX20_01796 0.27 +1.1
1,889,334 + MPMX20_01796 0.27 +1.9
1,889,334 + MPMX20_01796 0.27 -0.2
1,889,334 + MPMX20_01796 0.27 -0.6
1,889,342 - MPMX20_01796 0.27 -0.9
1,889,342 - MPMX20_01796 0.27 +2.0
1,889,342 - MPMX20_01796 0.27 +0.6
1,889,344 + MPMX20_01796 0.28 +0.8
1,889,458 + MPMX20_01796 0.38 +1.0
1,889,495 + MPMX20_01796 0.42 -0.4
1,889,513 - MPMX20_01796 0.43 -0.9
1,889,513 - MPMX20_01796 0.43 -0.2
1,889,513 - MPMX20_01796 0.43 -1.8
1,889,513 - MPMX20_01796 0.43 +0.6
1,889,563 - MPMX20_01796 0.48 +0.0
1,889,637 - MPMX20_01796 0.55 +0.5
1,889,646 + MPMX20_01796 0.56 -0.4
1,889,654 - MPMX20_01796 0.56 +1.3
1,889,664 - MPMX20_01796 0.57 -0.4
1,889,664 - MPMX20_01796 0.57 +0.4
1,889,664 - MPMX20_01796 0.57 -2.1
1,889,674 + MPMX20_01796 0.58 -1.4
1,889,795 - MPMX20_01796 0.70 +2.0
1,889,809 + MPMX20_01796 0.71 +1.0
1,889,839 + MPMX20_01796 0.74 -1.4
1,889,864 - MPMX20_01796 0.76 +0.5
1,889,877 + MPMX20_01796 0.77 +0.5

Or see this region's nucleotide sequence