Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01307 and MPMX20_01308 are separated by 5 nucleotides MPMX20_01308 and MPMX20_01309 are separated by 89 nucleotides MPMX20_01309 and MPMX20_01310 overlap by 4 nucleotides
MPMX20_01307: MPMX20_01307 - Apolipoprotein N-acyltransferase, at 1,368,148 to 1,369,686
_01307
MPMX20_01308: MPMX20_01308 - Magnesium and cobalt efflux protein CorC, at 1,369,692 to 1,370,570
_01308
MPMX20_01309: MPMX20_01309 - Endoribonuclease YbeY, at 1,370,660 to 1,371,127
_01309
MPMX20_01310: MPMX20_01310 - PhoH-like protein, at 1,371,124 to 1,372,170
_01310
Position (kb)
1369
1370
1371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1369.698 kb on - strand at 1369.789 kb on + strand, within MPMX20_01308 at 1369.804 kb on + strand, within MPMX20_01308 at 1369.920 kb on - strand, within MPMX20_01308 at 1369.932 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.933 kb on + strand, within MPMX20_01308 at 1369.939 kb on - strand, within MPMX20_01308 at 1369.941 kb on - strand, within MPMX20_01308 at 1369.941 kb on - strand, within MPMX20_01308 at 1369.960 kb on - strand, within MPMX20_01308 at 1370.120 kb on + strand, within MPMX20_01308 at 1370.140 kb on + strand, within MPMX20_01308 at 1370.169 kb on + strand, within MPMX20_01308 at 1370.311 kb on - strand, within MPMX20_01308 at 1370.321 kb on + strand, within MPMX20_01308 at 1370.392 kb on - strand, within MPMX20_01308 at 1370.400 kb on - strand, within MPMX20_01308 at 1370.540 kb on + strand at 1370.577 kb on + strand at 1370.605 kb on - strand at 1370.627 kb on - strand at 1371.139 kb on + strand at 1371.139 kb on + strand at 1371.147 kb on - strand at 1371.176 kb on + strand at 1371.192 kb on - strand at 1371.217 kb on - strand at 1371.252 kb on + strand, within MPMX20_01310 at 1371.252 kb on + strand, within MPMX20_01310 at 1371.278 kb on - strand, within MPMX20_01310 at 1371.311 kb on - strand, within MPMX20_01310 at 1371.345 kb on + strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.479 kb on - strand, within MPMX20_01310 at 1371.564 kb on - strand, within MPMX20_01310
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 1,369,698 - +1.9 1,369,789 + MPMX20_01308 0.11 -1.3 1,369,804 + MPMX20_01308 0.13 -2.0 1,369,920 - MPMX20_01308 0.26 -0.1 1,369,932 + MPMX20_01308 0.27 -1.1 1,369,933 + MPMX20_01308 0.27 -1.3 1,369,933 + MPMX20_01308 0.27 -2.6 1,369,933 + MPMX20_01308 0.27 -1.5 1,369,933 + MPMX20_01308 0.27 -0.5 1,369,933 + MPMX20_01308 0.27 -3.4 1,369,933 + MPMX20_01308 0.27 -1.0 1,369,933 + MPMX20_01308 0.27 -0.6 1,369,933 + MPMX20_01308 0.27 -2.2 1,369,939 - MPMX20_01308 0.28 -3.1 1,369,941 - MPMX20_01308 0.28 -1.1 1,369,941 - MPMX20_01308 0.28 -2.0 1,369,960 - MPMX20_01308 0.30 -1.4 1,370,120 + MPMX20_01308 0.49 -0.0 1,370,140 + MPMX20_01308 0.51 +0.9 1,370,169 + MPMX20_01308 0.54 -0.3 1,370,311 - MPMX20_01308 0.70 -1.7 1,370,321 + MPMX20_01308 0.72 -2.0 1,370,392 - MPMX20_01308 0.80 -0.2 1,370,400 - MPMX20_01308 0.81 -1.3 1,370,540 + -0.2 1,370,577 + -1.6 1,370,605 - +0.2 1,370,627 - +0.6 1,371,139 + -0.3 1,371,139 + -1.7 1,371,147 - +1.5 1,371,176 + -0.8 1,371,192 - +0.0 1,371,217 - +0.1 1,371,252 + MPMX20_01310 0.12 +0.3 1,371,252 + MPMX20_01310 0.12 -1.7 1,371,278 - MPMX20_01310 0.15 +1.0 1,371,311 - MPMX20_01310 0.18 -0.1 1,371,345 + MPMX20_01310 0.21 -0.6 1,371,479 - MPMX20_01310 0.34 +0.9 1,371,479 - MPMX20_01310 0.34 -0.3 1,371,564 - MPMX20_01310 0.42 +1.5
Or see this region's nucleotide sequence