Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00800

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00798 and MPMX20_00799 are separated by 10 nucleotidesMPMX20_00799 and MPMX20_00800 are separated by 173 nucleotidesMPMX20_00800 and MPMX20_00801 are separated by 87 nucleotidesMPMX20_00801 and MPMX20_00802 are separated by 9 nucleotides MPMX20_00798: MPMX20_00798 - Type II secretion system protein E, at 834,612 to 835,994 _00798 MPMX20_00799: MPMX20_00799 - Fimbrial protein, at 836,005 to 836,442 _00799 MPMX20_00800: MPMX20_00800 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 836,616 to 837,509 _00800 MPMX20_00801: MPMX20_00801 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 837,597 to 838,148 _00801 MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012 _00802 Position (kb) 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 835.680 kb on - strand, within MPMX20_00798at 835.682 kb on - strand, within MPMX20_00798at 835.682 kb on - strand, within MPMX20_00798at 835.733 kb on + strand, within MPMX20_00798at 835.790 kb on + strand, within MPMX20_00798at 835.828 kb on + strand, within MPMX20_00798at 835.884 kb on - strandat 835.884 kb on - strandat 835.886 kb on + strandat 835.894 kb on - strandat 835.899 kb on - strandat 835.918 kb on - strandat 836.003 kb on + strandat 836.033 kb on + strandat 836.033 kb on + strandat 836.041 kb on - strandat 836.088 kb on - strand, within MPMX20_00799at 836.090 kb on + strand, within MPMX20_00799at 836.110 kb on + strand, within MPMX20_00799at 836.110 kb on + strand, within MPMX20_00799at 836.149 kb on + strand, within MPMX20_00799at 836.228 kb on + strand, within MPMX20_00799at 836.248 kb on + strand, within MPMX20_00799at 836.248 kb on + strand, within MPMX20_00799at 836.256 kb on - strand, within MPMX20_00799at 836.261 kb on + strand, within MPMX20_00799at 836.273 kb on + strand, within MPMX20_00799at 836.281 kb on - strand, within MPMX20_00799at 836.385 kb on + strand, within MPMX20_00799at 836.417 kb on - strandat 836.417 kb on - strandat 836.418 kb on + strandat 836.425 kb on + strandat 836.437 kb on + strandat 836.437 kb on + strandat 836.445 kb on - strandat 836.472 kb on - strandat 836.546 kb on + strandat 836.546 kb on + strandat 836.546 kb on + strandat 836.554 kb on - strandat 836.554 kb on - strandat 836.653 kb on + strandat 836.661 kb on - strandat 836.719 kb on + strand, within MPMX20_00800at 836.791 kb on + strand, within MPMX20_00800at 836.799 kb on - strand, within MPMX20_00800at 836.844 kb on - strand, within MPMX20_00800at 836.885 kb on - strand, within MPMX20_00800at 836.888 kb on + strand, within MPMX20_00800at 836.966 kb on + strand, within MPMX20_00800at 836.984 kb on - strand, within MPMX20_00800at 836.998 kb on + strand, within MPMX20_00800at 837.009 kb on - strand, within MPMX20_00800at 837.009 kb on - strand, within MPMX20_00800at 837.018 kb on + strand, within MPMX20_00800at 837.026 kb on - strand, within MPMX20_00800at 837.060 kb on + strand, within MPMX20_00800at 837.105 kb on + strand, within MPMX20_00800at 837.198 kb on - strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.284 kb on + strand, within MPMX20_00800at 837.289 kb on + strand, within MPMX20_00800at 837.425 kb on + strandat 837.492 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.555 kb on + strandat 837.558 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.563 kb on - strandat 837.632 kb on + strandat 837.640 kb on - strandat 837.685 kb on - strand, within MPMX20_00801at 837.831 kb on - strand, within MPMX20_00801at 837.849 kb on - strand, within MPMX20_00801at 837.937 kb on + strand, within MPMX20_00801at 838.000 kb on - strand, within MPMX20_00801at 838.006 kb on + strand, within MPMX20_00801at 838.289 kb on + strand, within MPMX20_00802at 838.289 kb on + strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.427 kb on + strand, within MPMX20_00802

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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835,680 - MPMX20_00798 0.77 +0.5
835,682 - MPMX20_00798 0.77 -0.4
835,682 - MPMX20_00798 0.77 +0.2
835,733 + MPMX20_00798 0.81 +0.5
835,790 + MPMX20_00798 0.85 -2.9
835,828 + MPMX20_00798 0.88 +0.4
835,884 - -0.9
835,884 - +0.8
835,886 + +0.4
835,894 - +1.0
835,899 - -1.0
835,918 - +1.8
836,003 + -0.4
836,033 + +2.0
836,033 + +0.0
836,041 - +0.9
836,088 - MPMX20_00799 0.19 -1.0
836,090 + MPMX20_00799 0.19 -1.1
836,110 + MPMX20_00799 0.24 +1.1
836,110 + MPMX20_00799 0.24 -0.3
836,149 + MPMX20_00799 0.33 -0.4
836,228 + MPMX20_00799 0.51 -2.5
836,248 + MPMX20_00799 0.55 -0.6
836,248 + MPMX20_00799 0.55 -1.9
836,256 - MPMX20_00799 0.57 -1.5
836,261 + MPMX20_00799 0.58 +1.5
836,273 + MPMX20_00799 0.61 +0.0
836,281 - MPMX20_00799 0.63 +0.5
836,385 + MPMX20_00799 0.87 +1.0
836,417 - -0.6
836,417 - +0.3
836,418 + +0.3
836,425 + -0.3
836,437 + +0.4
836,437 + +0.7
836,445 - +0.6
836,472 - -1.0
836,546 + +0.1
836,546 + -0.2
836,546 + -2.7
836,554 - +1.8
836,554 - +0.0
836,653 + -1.7
836,661 - -2.1
836,719 + MPMX20_00800 0.12 -1.5
836,791 + MPMX20_00800 0.20 +0.4
836,799 - MPMX20_00800 0.20 -3.2
836,844 - MPMX20_00800 0.26 -1.2
836,885 - MPMX20_00800 0.30 -0.6
836,888 + MPMX20_00800 0.30 -2.6
836,966 + MPMX20_00800 0.39 -1.6
836,984 - MPMX20_00800 0.41 -1.7
836,998 + MPMX20_00800 0.43 -2.1
837,009 - MPMX20_00800 0.44 -3.5
837,009 - MPMX20_00800 0.44 -0.4
837,018 + MPMX20_00800 0.45 -1.4
837,026 - MPMX20_00800 0.46 -0.8
837,060 + MPMX20_00800 0.50 -1.3
837,105 + MPMX20_00800 0.55 -0.2
837,198 - MPMX20_00800 0.65 -2.1
837,284 + MPMX20_00800 0.75 -2.2
837,284 + MPMX20_00800 0.75 -0.4
837,289 + MPMX20_00800 0.75 -0.0
837,425 + -0.7
837,492 + -1.9
837,555 + +0.1
837,555 + -0.2
837,555 + -0.4
837,555 + +0.4
837,555 + +1.2
837,555 + +1.5
837,555 + +0.5
837,555 + -0.9
837,555 + +0.1
837,555 + +0.2
837,558 - -0.0
837,563 - -0.9
837,563 - +1.2
837,563 - +0.4
837,563 - -0.4
837,563 - -0.5
837,563 - -0.8
837,563 - +0.2
837,563 - -1.0
837,632 + +1.4
837,640 - -1.0
837,685 - MPMX20_00801 0.16 -0.4
837,831 - MPMX20_00801 0.42 -0.4
837,849 - MPMX20_00801 0.46 +0.1
837,937 + MPMX20_00801 0.62 +0.0
838,000 - MPMX20_00801 0.73 -0.7
838,006 + MPMX20_00801 0.74 -0.4
838,289 + MPMX20_00802 0.15 +0.3
838,289 + MPMX20_00802 0.15 +0.7
838,297 - MPMX20_00802 0.16 -1.4
838,297 - MPMX20_00802 0.16 -0.1
838,297 - MPMX20_00802 0.16 -1.0
838,399 + MPMX20_00802 0.28 +2.0
838,399 + MPMX20_00802 0.28 +1.4
838,427 + MPMX20_00802 0.31 +0.2

Or see this region's nucleotide sequence