Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00234

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00233 and MPMX20_00234 are separated by 43 nucleotidesMPMX20_00234 and MPMX20_00235 are separated by 194 nucleotides MPMX20_00233: MPMX20_00233 - Isocitrate dehydrogenase kinase/phosphatase, at 245,541 to 247,268 _00233 MPMX20_00234: MPMX20_00234 - Transcriptional repressor IclR, at 247,312 to 248,139 _00234 MPMX20_00235: MPMX20_00235 - Methionine synthase, at 248,334 to 252,017 _00235 Position (kb) 247 248 249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 246.334 kb on - strand, within MPMX20_00233at 246.344 kb on - strand, within MPMX20_00233at 246.379 kb on + strand, within MPMX20_00233at 246.389 kb on + strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.395 kb on + strand, within MPMX20_00233at 246.396 kb on + strand, within MPMX20_00233at 246.397 kb on - strand, within MPMX20_00233at 246.404 kb on - strand, within MPMX20_00233at 246.441 kb on + strand, within MPMX20_00233at 246.463 kb on - strand, within MPMX20_00233at 246.520 kb on - strand, within MPMX20_00233at 246.520 kb on - strand, within MPMX20_00233at 246.522 kb on - strand, within MPMX20_00233at 246.591 kb on + strand, within MPMX20_00233at 246.632 kb on - strand, within MPMX20_00233at 246.654 kb on + strand, within MPMX20_00233at 246.662 kb on - strand, within MPMX20_00233at 246.680 kb on + strand, within MPMX20_00233at 246.814 kb on + strand, within MPMX20_00233at 246.822 kb on - strand, within MPMX20_00233at 246.824 kb on + strand, within MPMX20_00233at 246.824 kb on + strand, within MPMX20_00233at 246.832 kb on - strand, within MPMX20_00233at 246.832 kb on - strand, within MPMX20_00233at 246.871 kb on - strand, within MPMX20_00233at 246.891 kb on + strand, within MPMX20_00233at 247.016 kb on + strand, within MPMX20_00233at 247.108 kb on + strandat 247.108 kb on + strandat 247.111 kb on - strandat 247.116 kb on - strandat 247.129 kb on - strandat 247.199 kb on + strandat 247.201 kb on - strandat 247.218 kb on + strandat 247.218 kb on + strandat 247.226 kb on - strandat 247.265 kb on + strandat 247.273 kb on - strandat 247.303 kb on + strandat 247.375 kb on - strandat 247.449 kb on + strand, within MPMX20_00234at 247.449 kb on + strand, within MPMX20_00234at 247.456 kb on + strand, within MPMX20_00234at 247.479 kb on + strand, within MPMX20_00234at 247.479 kb on + strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.556 kb on + strand, within MPMX20_00234at 247.564 kb on - strand, within MPMX20_00234at 247.569 kb on - strand, within MPMX20_00234at 247.577 kb on + strand, within MPMX20_00234at 247.585 kb on - strand, within MPMX20_00234at 247.593 kb on - strand, within MPMX20_00234at 247.598 kb on - strand, within MPMX20_00234at 247.600 kb on - strand, within MPMX20_00234at 247.620 kb on + strand, within MPMX20_00234at 247.625 kb on + strand, within MPMX20_00234at 247.625 kb on + strand, within MPMX20_00234at 247.633 kb on - strand, within MPMX20_00234at 247.718 kb on + strand, within MPMX20_00234at 247.726 kb on - strand, within MPMX20_00234at 247.751 kb on - strand, within MPMX20_00234at 247.836 kb on + strand, within MPMX20_00234at 247.836 kb on + strand, within MPMX20_00234at 247.843 kb on + strand, within MPMX20_00234at 247.856 kb on - strand, within MPMX20_00234at 247.866 kb on + strand, within MPMX20_00234at 247.896 kb on + strand, within MPMX20_00234at 247.922 kb on + strand, within MPMX20_00234at 247.958 kb on - strand, within MPMX20_00234at 248.014 kb on - strand, within MPMX20_00234at 248.092 kb on + strandat 248.103 kb on + strandat 248.129 kb on + strandat 248.207 kb on - strandat 248.244 kb on - strandat 248.259 kb on + strandat 248.259 kb on + strandat 248.284 kb on + strandat 248.326 kb on + strandat 248.331 kb on + strandat 248.331 kb on + strandat 248.347 kb on - strandat 248.349 kb on + strandat 248.581 kb on + strandat 248.589 kb on - strandat 248.589 kb on - strandat 248.674 kb on + strandat 248.729 kb on + strand, within MPMX20_00235at 248.797 kb on + strand, within MPMX20_00235at 248.862 kb on - strand, within MPMX20_00235at 248.862 kb on - strand, within MPMX20_00235at 248.899 kb on - strand, within MPMX20_00235at 248.986 kb on + strand, within MPMX20_00235at 248.986 kb on + strand, within MPMX20_00235at 248.994 kb on - strand, within MPMX20_00235at 249.009 kb on - strand, within MPMX20_00235at 249.063 kb on + strand, within MPMX20_00235at 249.066 kb on - strand, within MPMX20_00235at 249.066 kb on - strand, within MPMX20_00235at 249.071 kb on - strand, within MPMX20_00235at 249.082 kb on + strand, within MPMX20_00235at 249.134 kb on - strand, within MPMX20_00235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
246,334 - MPMX20_00233 0.46 +1.0
246,344 - MPMX20_00233 0.46 +0.3
246,379 + MPMX20_00233 0.48 +1.1
246,389 + MPMX20_00233 0.49 +1.1
246,392 - MPMX20_00233 0.49 +1.3
246,392 - MPMX20_00233 0.49 +0.3
246,395 + MPMX20_00233 0.49 +0.9
246,396 + MPMX20_00233 0.49 -0.3
246,397 - MPMX20_00233 0.50 +1.3
246,404 - MPMX20_00233 0.50 -0.3
246,441 + MPMX20_00233 0.52 +0.1
246,463 - MPMX20_00233 0.53 +1.1
246,520 - MPMX20_00233 0.57 +0.4
246,520 - MPMX20_00233 0.57 -1.5
246,522 - MPMX20_00233 0.57 +0.0
246,591 + MPMX20_00233 0.61 -0.2
246,632 - MPMX20_00233 0.63 +1.1
246,654 + MPMX20_00233 0.64 +0.8
246,662 - MPMX20_00233 0.65 -0.4
246,680 + MPMX20_00233 0.66 +1.1
246,814 + MPMX20_00233 0.74 -0.4
246,822 - MPMX20_00233 0.74 +0.9
246,824 + MPMX20_00233 0.74 +0.6
246,824 + MPMX20_00233 0.74 +0.3
246,832 - MPMX20_00233 0.75 +1.8
246,832 - MPMX20_00233 0.75 -1.9
246,871 - MPMX20_00233 0.77 -1.0
246,891 + MPMX20_00233 0.78 +0.6
247,016 + MPMX20_00233 0.85 -0.2
247,108 + +1.0
247,108 + -0.9
247,111 - -1.4
247,116 - -1.3
247,129 - +0.1
247,199 + -0.7
247,201 - -0.1
247,218 + +0.5
247,218 + +0.0
247,226 - +0.0
247,265 + -0.5
247,273 - -0.8
247,303 + -1.2
247,375 - +0.1
247,449 + MPMX20_00234 0.17 -2.6
247,449 + MPMX20_00234 0.17 -4.5
247,456 + MPMX20_00234 0.17 -1.5
247,479 + MPMX20_00234 0.20 +0.1
247,479 + MPMX20_00234 0.20 -2.8
247,487 - MPMX20_00234 0.21 -1.7
247,487 - MPMX20_00234 0.21 -1.1
247,487 - MPMX20_00234 0.21 -2.8
247,487 - MPMX20_00234 0.21 -3.5
247,556 + MPMX20_00234 0.29 -0.2
247,564 - MPMX20_00234 0.30 -1.8
247,569 - MPMX20_00234 0.31 -1.1
247,577 + MPMX20_00234 0.32 -2.8
247,585 - MPMX20_00234 0.33 -2.6
247,593 - MPMX20_00234 0.34 -3.3
247,598 - MPMX20_00234 0.35 -1.8
247,600 - MPMX20_00234 0.35 -2.5
247,620 + MPMX20_00234 0.37 -3.6
247,625 + MPMX20_00234 0.38 -1.9
247,625 + MPMX20_00234 0.38 -3.9
247,633 - MPMX20_00234 0.39 -3.6
247,718 + MPMX20_00234 0.49 -3.1
247,726 - MPMX20_00234 0.50 -2.4
247,751 - MPMX20_00234 0.53 -3.1
247,836 + MPMX20_00234 0.63 -3.6
247,836 + MPMX20_00234 0.63 -3.0
247,843 + MPMX20_00234 0.64 -4.2
247,856 - MPMX20_00234 0.66 -3.4
247,866 + MPMX20_00234 0.67 +0.1
247,896 + MPMX20_00234 0.71 -1.5
247,922 + MPMX20_00234 0.74 -2.3
247,958 - MPMX20_00234 0.78 -3.4
248,014 - MPMX20_00234 0.85 -1.1
248,092 + -3.6
248,103 + -2.9
248,129 + -2.7
248,207 - +0.9
248,244 - +1.2
248,259 + +1.4
248,259 + +0.6
248,284 + -0.5
248,326 + -0.1
248,331 + -2.0
248,331 + +0.3
248,347 - -0.2
248,349 + +0.1
248,581 + -0.1
248,589 - -0.9
248,589 - -0.9
248,674 + -2.0
248,729 + MPMX20_00235 0.11 -1.3
248,797 + MPMX20_00235 0.13 -0.0
248,862 - MPMX20_00235 0.14 +2.5
248,862 - MPMX20_00235 0.14 +0.6
248,899 - MPMX20_00235 0.15 -2.5
248,986 + MPMX20_00235 0.18 -0.1
248,986 + MPMX20_00235 0.18 +0.2
248,994 - MPMX20_00235 0.18 -0.4
249,009 - MPMX20_00235 0.18 +0.4
249,063 + MPMX20_00235 0.20 -1.3
249,066 - MPMX20_00235 0.20 -0.5
249,066 - MPMX20_00235 0.20 -0.6
249,071 - MPMX20_00235 0.20 +1.1
249,082 + MPMX20_00235 0.20 -1.1
249,134 - MPMX20_00235 0.22 -2.2

Or see this region's nucleotide sequence