Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02766 and MPMX20_02767 are separated by 8 nucleotides MPMX20_02767 and MPMX20_02768 are separated by 80 nucleotides MPMX20_02768 and MPMX20_02769 are separated by 34 nucleotides
MPMX20_02766: MPMX20_02766 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,921,686 to 2,922,696
_02766
MPMX20_02767: MPMX20_02767 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,922,705 to 2,923,316
_02767
MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918
_02768
MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693
_02769
Position (kb)
2922
2923
2924 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2921.778 kb on + strand at 2921.778 kb on + strand at 2921.893 kb on - strand, within MPMX20_02766 at 2921.903 kb on - strand, within MPMX20_02766 at 2922.050 kb on - strand, within MPMX20_02766 at 2922.194 kb on - strand, within MPMX20_02766 at 2922.335 kb on + strand, within MPMX20_02766 at 2922.355 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.389 kb on - strand, within MPMX20_02766 at 2922.391 kb on + strand, within MPMX20_02766 at 2922.440 kb on - strand, within MPMX20_02766 at 2922.458 kb on - strand, within MPMX20_02766 at 2922.491 kb on + strand, within MPMX20_02766 at 2922.626 kb on - strand at 2922.881 kb on + strand, within MPMX20_02767 at 2922.892 kb on + strand, within MPMX20_02767 at 2922.900 kb on - strand, within MPMX20_02767 at 2922.916 kb on + strand, within MPMX20_02767 at 2922.916 kb on + strand, within MPMX20_02767 at 2922.979 kb on + strand, within MPMX20_02767 at 2922.987 kb on - strand, within MPMX20_02767 at 2923.001 kb on - strand, within MPMX20_02767 at 2923.034 kb on - strand, within MPMX20_02767 at 2923.158 kb on - strand, within MPMX20_02767 at 2923.242 kb on + strand, within MPMX20_02767 at 2923.268 kb on - strand at 2923.331 kb on - strand at 2923.407 kb on - strand at 2923.447 kb on - strand at 2923.447 kb on - strand at 2923.471 kb on + strand, within MPMX20_02768 at 2923.479 kb on - strand, within MPMX20_02768 at 2923.526 kb on + strand, within MPMX20_02768 at 2923.526 kb on + strand, within MPMX20_02768 at 2923.532 kb on - strand, within MPMX20_02768 at 2923.720 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.902 kb on - strand at 2923.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,921,778 + -0.8 2,921,778 + -0.4 2,921,893 - MPMX20_02766 0.20 -1.9 2,921,903 - MPMX20_02766 0.21 -3.0 2,922,050 - MPMX20_02766 0.36 -1.4 2,922,194 - MPMX20_02766 0.50 -1.8 2,922,335 + MPMX20_02766 0.64 -2.2 2,922,355 - MPMX20_02766 0.66 -2.6 2,922,389 - MPMX20_02766 0.70 -1.8 2,922,389 - MPMX20_02766 0.70 -2.2 2,922,389 - MPMX20_02766 0.70 -0.6 2,922,391 + MPMX20_02766 0.70 -1.8 2,922,440 - MPMX20_02766 0.75 -0.9 2,922,458 - MPMX20_02766 0.76 +0.5 2,922,491 + MPMX20_02766 0.80 -2.5 2,922,626 - -2.9 2,922,881 + MPMX20_02767 0.29 -1.4 2,922,892 + MPMX20_02767 0.31 -0.4 2,922,900 - MPMX20_02767 0.32 +1.2 2,922,916 + MPMX20_02767 0.34 -1.6 2,922,916 + MPMX20_02767 0.34 -2.6 2,922,979 + MPMX20_02767 0.45 +0.2 2,922,987 - MPMX20_02767 0.46 -2.5 2,923,001 - MPMX20_02767 0.48 -4.0 2,923,034 - MPMX20_02767 0.54 -0.8 2,923,158 - MPMX20_02767 0.74 -2.8 2,923,242 + MPMX20_02767 0.88 +0.0 2,923,268 - -1.5 2,923,331 - +0.5 2,923,407 - -1.6 2,923,447 - -2.0 2,923,447 - -1.1 2,923,471 + MPMX20_02768 0.14 -1.7 2,923,479 - MPMX20_02768 0.16 -2.4 2,923,526 + MPMX20_02768 0.25 -1.1 2,923,526 + MPMX20_02768 0.25 -2.1 2,923,532 - MPMX20_02768 0.26 -1.1 2,923,720 - MPMX20_02768 0.62 -2.1 2,923,783 - MPMX20_02768 0.74 -1.4 2,923,783 - MPMX20_02768 0.74 -1.8 2,923,902 - -1.8 2,923,928 + -1.0
Or see this region's nucleotide sequence