Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00538

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00537 and MPMX20_00538 are separated by 51 nucleotidesMPMX20_00538 and MPMX20_00539 are separated by 128 nucleotides MPMX20_00537: MPMX20_00537 - Trehalose-6-phosphate hydrolase, at 555,847 to 557,502 _00537 MPMX20_00538: MPMX20_00538 - PTS system trehalose-specific EIIBC component, at 557,554 to 558,972 _00538 MPMX20_00539: MPMX20_00539 - HTH-type transcriptional regulator TreR, at 559,101 to 560,048 _00539 Position (kb) 557 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 556.575 kb on - strand, within MPMX20_00537at 556.619 kb on + strand, within MPMX20_00537at 556.632 kb on - strand, within MPMX20_00537at 556.666 kb on - strand, within MPMX20_00537at 556.675 kb on + strand, within MPMX20_00537at 556.682 kb on + strand, within MPMX20_00537at 556.701 kb on + strand, within MPMX20_00537at 556.784 kb on - strand, within MPMX20_00537at 556.784 kb on - strand, within MPMX20_00537at 556.784 kb on - strand, within MPMX20_00537at 556.784 kb on - strand, within MPMX20_00537at 556.840 kb on - strand, within MPMX20_00537at 556.881 kb on - strand, within MPMX20_00537at 556.902 kb on + strand, within MPMX20_00537at 556.934 kb on + strand, within MPMX20_00537at 557.024 kb on - strand, within MPMX20_00537at 557.128 kb on - strand, within MPMX20_00537at 557.165 kb on + strand, within MPMX20_00537at 557.165 kb on + strand, within MPMX20_00537at 557.178 kb on + strand, within MPMX20_00537at 557.178 kb on + strand, within MPMX20_00537at 557.180 kb on + strand, within MPMX20_00537at 557.197 kb on + strand, within MPMX20_00537at 557.211 kb on + strand, within MPMX20_00537at 557.211 kb on - strand, within MPMX20_00537at 557.270 kb on + strand, within MPMX20_00537at 557.394 kb on + strandat 557.394 kb on + strandat 557.402 kb on - strandat 557.402 kb on - strandat 557.429 kb on + strandat 557.433 kb on - strandat 557.495 kb on - strandat 557.536 kb on - strandat 557.541 kb on - strandat 557.600 kb on - strandat 557.613 kb on - strandat 557.636 kb on + strandat 557.673 kb on + strandat 557.718 kb on + strand, within MPMX20_00538at 557.736 kb on - strand, within MPMX20_00538at 557.748 kb on - strand, within MPMX20_00538at 557.754 kb on + strand, within MPMX20_00538at 557.754 kb on + strand, within MPMX20_00538at 557.759 kb on + strand, within MPMX20_00538at 557.767 kb on - strand, within MPMX20_00538at 557.882 kb on - strand, within MPMX20_00538at 557.882 kb on - strand, within MPMX20_00538at 557.882 kb on - strand, within MPMX20_00538at 557.903 kb on - strand, within MPMX20_00538at 557.903 kb on - strand, within MPMX20_00538at 557.912 kb on + strand, within MPMX20_00538at 557.925 kb on - strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.927 kb on + strand, within MPMX20_00538at 557.929 kb on + strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.935 kb on - strand, within MPMX20_00538at 557.948 kb on + strand, within MPMX20_00538at 557.948 kb on + strand, within MPMX20_00538at 557.956 kb on - strand, within MPMX20_00538at 557.963 kb on - strand, within MPMX20_00538at 557.970 kb on + strand, within MPMX20_00538at 558.004 kb on + strand, within MPMX20_00538at 558.005 kb on + strand, within MPMX20_00538at 558.005 kb on + strand, within MPMX20_00538at 558.012 kb on - strand, within MPMX20_00538at 558.017 kb on - strand, within MPMX20_00538at 558.028 kb on - strand, within MPMX20_00538at 558.054 kb on + strand, within MPMX20_00538at 558.171 kb on + strand, within MPMX20_00538at 558.171 kb on + strand, within MPMX20_00538at 558.171 kb on + strand, within MPMX20_00538at 558.179 kb on + strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.203 kb on - strand, within MPMX20_00538at 558.209 kb on - strand, within MPMX20_00538at 558.214 kb on - strand, within MPMX20_00538at 558.260 kb on - strand, within MPMX20_00538at 558.275 kb on + strand, within MPMX20_00538at 558.310 kb on + strand, within MPMX20_00538at 558.318 kb on - strand, within MPMX20_00538at 558.326 kb on - strand, within MPMX20_00538at 558.333 kb on - strand, within MPMX20_00538at 558.438 kb on + strand, within MPMX20_00538at 558.438 kb on + strand, within MPMX20_00538at 558.446 kb on - strand, within MPMX20_00538at 558.502 kb on + strand, within MPMX20_00538at 558.510 kb on - strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.564 kb on - strand, within MPMX20_00538at 558.572 kb on - strand, within MPMX20_00538at 558.587 kb on + strand, within MPMX20_00538at 558.594 kb on - strand, within MPMX20_00538at 558.599 kb on - strand, within MPMX20_00538at 558.602 kb on + strand, within MPMX20_00538at 558.698 kb on + strand, within MPMX20_00538at 558.762 kb on + strand, within MPMX20_00538at 558.779 kb on + strand, within MPMX20_00538at 558.784 kb on + strand, within MPMX20_00538at 558.787 kb on - strand, within MPMX20_00538at 558.808 kb on + strand, within MPMX20_00538at 558.808 kb on + strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.848 kb on + strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.988 kb on - strandat 558.999 kb on - strandat 559.009 kb on - strandat 559.028 kb on - strandat 559.030 kb on - strandat 559.136 kb on + strandat 559.136 kb on + strandat 559.136 kb on + strandat 559.174 kb on - strandat 559.208 kb on - strand, within MPMX20_00539at 559.234 kb on + strand, within MPMX20_00539at 559.234 kb on + strand, within MPMX20_00539at 559.279 kb on + strand, within MPMX20_00539at 559.333 kb on + strand, within MPMX20_00539at 559.338 kb on + strand, within MPMX20_00539at 559.341 kb on - strand, within MPMX20_00539at 559.343 kb on + strand, within MPMX20_00539at 559.343 kb on + strand, within MPMX20_00539at 559.379 kb on + strand, within MPMX20_00539at 559.379 kb on + strand, within MPMX20_00539at 559.391 kb on + strand, within MPMX20_00539at 559.394 kb on - strand, within MPMX20_00539at 559.423 kb on + strand, within MPMX20_00539at 559.449 kb on + strand, within MPMX20_00539at 559.462 kb on - strand, within MPMX20_00539at 559.521 kb on + strand, within MPMX20_00539at 559.553 kb on + strand, within MPMX20_00539at 559.555 kb on + strand, within MPMX20_00539at 559.568 kb on + strand, within MPMX20_00539at 559.604 kb on - strand, within MPMX20_00539at 559.606 kb on + strand, within MPMX20_00539at 559.641 kb on - strand, within MPMX20_00539at 559.657 kb on - strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.708 kb on + strand, within MPMX20_00539at 559.738 kb on + strand, within MPMX20_00539at 559.767 kb on + strand, within MPMX20_00539at 559.775 kb on - strand, within MPMX20_00539at 559.781 kb on + strand, within MPMX20_00539at 559.800 kb on + strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.909 kb on - strand, within MPMX20_00539

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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556,575 - MPMX20_00537 0.44 +0.6
556,619 + MPMX20_00537 0.47 -2.1
556,632 - MPMX20_00537 0.47 -1.3
556,666 - MPMX20_00537 0.49 -1.1
556,675 + MPMX20_00537 0.50 -1.5
556,682 + MPMX20_00537 0.50 +0.3
556,701 + MPMX20_00537 0.52 -0.8
556,784 - MPMX20_00537 0.57 +0.4
556,784 - MPMX20_00537 0.57 -0.8
556,784 - MPMX20_00537 0.57 -1.2
556,784 - MPMX20_00537 0.57 -0.3
556,840 - MPMX20_00537 0.60 -1.0
556,881 - MPMX20_00537 0.62 -1.8
556,902 + MPMX20_00537 0.64 +2.1
556,934 + MPMX20_00537 0.66 -0.6
557,024 - MPMX20_00537 0.71 -1.3
557,128 - MPMX20_00537 0.77 -2.2
557,165 + MPMX20_00537 0.80 +1.0
557,165 + MPMX20_00537 0.80 -3.2
557,178 + MPMX20_00537 0.80 -0.3
557,178 + MPMX20_00537 0.80 -2.0
557,180 + MPMX20_00537 0.80 -2.8
557,197 + MPMX20_00537 0.82 +0.4
557,211 + MPMX20_00537 0.82 +0.2
557,211 - MPMX20_00537 0.82 -0.5
557,270 + MPMX20_00537 0.86 -0.8
557,394 + -1.6
557,394 + +0.1
557,402 - -0.0
557,402 - +0.1
557,429 + -1.4
557,433 - -1.1
557,495 - -1.0
557,536 - +1.0
557,541 - +0.1
557,600 - +0.6
557,613 - -1.0
557,636 + +0.8
557,673 + -1.5
557,718 + MPMX20_00538 0.12 +0.3
557,736 - MPMX20_00538 0.13 +0.1
557,748 - MPMX20_00538 0.14 -0.4
557,754 + MPMX20_00538 0.14 -1.1
557,754 + MPMX20_00538 0.14 -0.2
557,759 + MPMX20_00538 0.14 -0.6
557,767 - MPMX20_00538 0.15 +0.7
557,882 - MPMX20_00538 0.23 +0.7
557,882 - MPMX20_00538 0.23 +0.1
557,882 - MPMX20_00538 0.23 -1.2
557,903 - MPMX20_00538 0.25 +0.1
557,903 - MPMX20_00538 0.25 -0.6
557,912 + MPMX20_00538 0.25 -0.8
557,925 - MPMX20_00538 0.26 -0.8
557,927 + MPMX20_00538 0.26 -0.9
557,927 + MPMX20_00538 0.26 -0.8
557,927 + MPMX20_00538 0.26 -0.3
557,927 + MPMX20_00538 0.26 +0.1
557,927 + MPMX20_00538 0.26 -0.4
557,927 + MPMX20_00538 0.26 -1.5
557,927 + MPMX20_00538 0.26 -0.5
557,927 + MPMX20_00538 0.26 +0.2
557,929 + MPMX20_00538 0.26 +1.1
557,935 - MPMX20_00538 0.27 +0.8
557,935 - MPMX20_00538 0.27 -0.3
557,935 - MPMX20_00538 0.27 +0.1
557,935 - MPMX20_00538 0.27 +0.7
557,935 - MPMX20_00538 0.27 -0.2
557,935 - MPMX20_00538 0.27 +0.3
557,935 - MPMX20_00538 0.27 -1.5
557,948 + MPMX20_00538 0.28 -0.5
557,948 + MPMX20_00538 0.28 -0.4
557,956 - MPMX20_00538 0.28 +0.4
557,963 - MPMX20_00538 0.29 +2.0
557,970 + MPMX20_00538 0.29 -0.6
558,004 + MPMX20_00538 0.32 -0.3
558,005 + MPMX20_00538 0.32 -1.7
558,005 + MPMX20_00538 0.32 -0.2
558,012 - MPMX20_00538 0.32 -0.4
558,017 - MPMX20_00538 0.33 -0.6
558,028 - MPMX20_00538 0.33 -0.1
558,054 + MPMX20_00538 0.35 +0.7
558,171 + MPMX20_00538 0.43 -0.2
558,171 + MPMX20_00538 0.43 +0.1
558,171 + MPMX20_00538 0.43 -0.9
558,179 + MPMX20_00538 0.44 -1.3
558,179 - MPMX20_00538 0.44 +1.0
558,179 - MPMX20_00538 0.44 -0.3
558,179 - MPMX20_00538 0.44 -1.0
558,203 - MPMX20_00538 0.46 +0.6
558,209 - MPMX20_00538 0.46 -1.5
558,214 - MPMX20_00538 0.47 -0.3
558,260 - MPMX20_00538 0.50 -1.3
558,275 + MPMX20_00538 0.51 -0.1
558,310 + MPMX20_00538 0.53 +1.0
558,318 - MPMX20_00538 0.54 -1.6
558,326 - MPMX20_00538 0.54 -0.8
558,333 - MPMX20_00538 0.55 -0.2
558,438 + MPMX20_00538 0.62 +0.1
558,438 + MPMX20_00538 0.62 -0.9
558,446 - MPMX20_00538 0.63 +0.2
558,502 + MPMX20_00538 0.67 +0.8
558,510 - MPMX20_00538 0.67 -0.6
558,524 + MPMX20_00538 0.68 -0.3
558,524 + MPMX20_00538 0.68 -0.2
558,524 + MPMX20_00538 0.68 -0.8
558,524 + MPMX20_00538 0.68 +0.6
558,532 - MPMX20_00538 0.69 -0.6
558,532 - MPMX20_00538 0.69 +0.5
558,532 - MPMX20_00538 0.69 +0.7
558,532 - MPMX20_00538 0.69 -0.1
558,532 - MPMX20_00538 0.69 +0.6
558,532 - MPMX20_00538 0.69 -0.6
558,564 - MPMX20_00538 0.71 -0.3
558,572 - MPMX20_00538 0.72 -0.7
558,587 + MPMX20_00538 0.73 -0.6
558,594 - MPMX20_00538 0.73 +0.4
558,599 - MPMX20_00538 0.74 -0.8
558,602 + MPMX20_00538 0.74 -0.8
558,698 + MPMX20_00538 0.81 -0.5
558,762 + MPMX20_00538 0.85 -1.7
558,779 + MPMX20_00538 0.86 +0.8
558,784 + MPMX20_00538 0.87 +0.2
558,787 - MPMX20_00538 0.87 -0.8
558,808 + MPMX20_00538 0.88 +1.2
558,808 + MPMX20_00538 0.88 -0.5
558,816 - MPMX20_00538 0.89 +0.8
558,816 - MPMX20_00538 0.89 -0.3
558,816 - MPMX20_00538 0.89 +0.2
558,816 - MPMX20_00538 0.89 +0.5
558,848 + +1.2
558,856 - -0.9
558,856 - -2.2
558,988 - +0.6
558,999 - -0.3
559,009 - -0.1
559,028 - +0.9
559,030 - -0.0
559,136 + +0.1
559,136 + +0.7
559,136 + -0.6
559,174 - +0.0
559,208 - MPMX20_00539 0.11 +0.1
559,234 + MPMX20_00539 0.14 +0.2
559,234 + MPMX20_00539 0.14 +1.2
559,279 + MPMX20_00539 0.19 +0.8
559,333 + MPMX20_00539 0.24 -1.5
559,338 + MPMX20_00539 0.25 +0.8
559,341 - MPMX20_00539 0.25 -1.7
559,343 + MPMX20_00539 0.26 +1.3
559,343 + MPMX20_00539 0.26 +0.3
559,379 + MPMX20_00539 0.29 +0.7
559,379 + MPMX20_00539 0.29 -0.3
559,391 + MPMX20_00539 0.31 -0.4
559,394 - MPMX20_00539 0.31 +0.2
559,423 + MPMX20_00539 0.34 -0.9
559,449 + MPMX20_00539 0.37 +0.5
559,462 - MPMX20_00539 0.38 +0.1
559,521 + MPMX20_00539 0.44 -0.6
559,553 + MPMX20_00539 0.48 -0.6
559,555 + MPMX20_00539 0.48 -0.7
559,568 + MPMX20_00539 0.49 +1.0
559,604 - MPMX20_00539 0.53 -0.5
559,606 + MPMX20_00539 0.53 +0.6
559,641 - MPMX20_00539 0.57 +0.9
559,657 - MPMX20_00539 0.59 +0.8
559,679 + MPMX20_00539 0.61 +1.0
559,679 + MPMX20_00539 0.61 +0.5
559,679 + MPMX20_00539 0.61 +2.1
559,708 + MPMX20_00539 0.64 +0.3
559,738 + MPMX20_00539 0.67 +0.0
559,767 + MPMX20_00539 0.70 +0.9
559,775 - MPMX20_00539 0.71 +0.9
559,781 + MPMX20_00539 0.72 -0.9
559,800 + MPMX20_00539 0.74 +1.2
559,808 - MPMX20_00539 0.75 +1.3
559,808 - MPMX20_00539 0.75 +0.9
559,808 - MPMX20_00539 0.75 +1.7
559,909 - MPMX20_00539 0.85 -0.2

Or see this region's nucleotide sequence