Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00233

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00232 and MPMX20_00233 are separated by 88 nucleotidesMPMX20_00233 and MPMX20_00234 are separated by 43 nucleotides MPMX20_00232: MPMX20_00232 - Isocitrate lyase, at 244,148 to 245,452 _00232 MPMX20_00233: MPMX20_00233 - Isocitrate dehydrogenase kinase/phosphatase, at 245,541 to 247,268 _00233 MPMX20_00234: MPMX20_00234 - Transcriptional repressor IclR, at 247,312 to 248,139 _00234 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 244.541 kb on + strand, within MPMX20_00232at 244.554 kb on - strand, within MPMX20_00232at 244.563 kb on + strand, within MPMX20_00232at 244.576 kb on - strand, within MPMX20_00232at 244.636 kb on - strand, within MPMX20_00232at 244.636 kb on - strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.650 kb on + strand, within MPMX20_00232at 244.658 kb on - strand, within MPMX20_00232at 244.658 kb on - strand, within MPMX20_00232at 244.757 kb on + strand, within MPMX20_00232at 244.798 kb on + strand, within MPMX20_00232at 244.798 kb on + strand, within MPMX20_00232at 244.840 kb on - strand, within MPMX20_00232at 244.841 kb on - strand, within MPMX20_00232at 244.856 kb on - strand, within MPMX20_00232at 244.865 kb on - strand, within MPMX20_00232at 244.894 kb on - strand, within MPMX20_00232at 244.900 kb on + strand, within MPMX20_00232at 244.920 kb on + strand, within MPMX20_00232at 244.930 kb on + strand, within MPMX20_00232at 244.936 kb on - strand, within MPMX20_00232at 244.968 kb on + strand, within MPMX20_00232at 244.976 kb on - strand, within MPMX20_00232at 244.988 kb on - strand, within MPMX20_00232at 244.997 kb on + strand, within MPMX20_00232at 244.997 kb on + strand, within MPMX20_00232at 245.005 kb on - strand, within MPMX20_00232at 245.055 kb on + strand, within MPMX20_00232at 245.090 kb on + strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.098 kb on - strand, within MPMX20_00232at 245.242 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.260 kb on + strand, within MPMX20_00232at 245.268 kb on - strand, within MPMX20_00232at 245.268 kb on - strand, within MPMX20_00232at 245.324 kb on + strandat 245.331 kb on - strandat 245.347 kb on + strandat 245.353 kb on + strandat 245.354 kb on + strandat 245.354 kb on - strandat 245.385 kb on + strandat 245.389 kb on + strandat 245.441 kb on + strandat 245.449 kb on - strandat 245.449 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.454 kb on - strandat 245.456 kb on + strandat 245.516 kb on + strandat 245.516 kb on + strandat 245.600 kb on + strandat 245.619 kb on + strandat 245.649 kb on - strandat 245.673 kb on - strandat 245.704 kb on - strandat 245.778 kb on - strand, within MPMX20_00233at 245.871 kb on + strand, within MPMX20_00233at 245.890 kb on - strand, within MPMX20_00233at 246.061 kb on + strand, within MPMX20_00233at 246.068 kb on - strand, within MPMX20_00233at 246.102 kb on - strand, within MPMX20_00233at 246.118 kb on + strand, within MPMX20_00233at 246.194 kb on - strand, within MPMX20_00233at 246.240 kb on - strand, within MPMX20_00233at 246.268 kb on + strand, within MPMX20_00233at 246.307 kb on + strand, within MPMX20_00233at 246.334 kb on - strand, within MPMX20_00233at 246.344 kb on - strand, within MPMX20_00233at 246.379 kb on + strand, within MPMX20_00233at 246.389 kb on + strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.392 kb on - strand, within MPMX20_00233at 246.395 kb on + strand, within MPMX20_00233at 246.396 kb on + strand, within MPMX20_00233at 246.397 kb on - strand, within MPMX20_00233at 246.404 kb on - strand, within MPMX20_00233at 246.441 kb on + strand, within MPMX20_00233at 246.463 kb on - strand, within MPMX20_00233at 246.520 kb on - strand, within MPMX20_00233at 246.520 kb on - strand, within MPMX20_00233at 246.522 kb on - strand, within MPMX20_00233at 246.591 kb on + strand, within MPMX20_00233at 246.632 kb on - strand, within MPMX20_00233at 246.654 kb on + strand, within MPMX20_00233at 246.662 kb on - strand, within MPMX20_00233at 246.680 kb on + strand, within MPMX20_00233at 246.814 kb on + strand, within MPMX20_00233at 246.822 kb on - strand, within MPMX20_00233at 246.824 kb on + strand, within MPMX20_00233at 246.824 kb on + strand, within MPMX20_00233at 246.832 kb on - strand, within MPMX20_00233at 246.832 kb on - strand, within MPMX20_00233at 246.871 kb on - strand, within MPMX20_00233at 246.891 kb on + strand, within MPMX20_00233at 247.016 kb on + strand, within MPMX20_00233at 247.108 kb on + strandat 247.108 kb on + strandat 247.111 kb on - strandat 247.116 kb on - strandat 247.129 kb on - strandat 247.199 kb on + strandat 247.201 kb on - strandat 247.218 kb on + strandat 247.218 kb on + strandat 247.226 kb on - strandat 247.265 kb on + strandat 247.273 kb on - strandat 247.303 kb on + strandat 247.375 kb on - strandat 247.449 kb on + strand, within MPMX20_00234at 247.449 kb on + strand, within MPMX20_00234at 247.456 kb on + strand, within MPMX20_00234at 247.479 kb on + strand, within MPMX20_00234at 247.479 kb on + strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.487 kb on - strand, within MPMX20_00234at 247.556 kb on + strand, within MPMX20_00234at 247.564 kb on - strand, within MPMX20_00234at 247.569 kb on - strand, within MPMX20_00234at 247.577 kb on + strand, within MPMX20_00234at 247.585 kb on - strand, within MPMX20_00234at 247.593 kb on - strand, within MPMX20_00234at 247.598 kb on - strand, within MPMX20_00234at 247.600 kb on - strand, within MPMX20_00234at 247.620 kb on + strand, within MPMX20_00234at 247.625 kb on + strand, within MPMX20_00234at 247.625 kb on + strand, within MPMX20_00234at 247.633 kb on - strand, within MPMX20_00234at 247.718 kb on + strand, within MPMX20_00234at 247.726 kb on - strand, within MPMX20_00234at 247.751 kb on - strand, within MPMX20_00234at 247.836 kb on + strand, within MPMX20_00234at 247.836 kb on + strand, within MPMX20_00234at 247.843 kb on + strand, within MPMX20_00234at 247.856 kb on - strand, within MPMX20_00234at 247.866 kb on + strand, within MPMX20_00234at 247.896 kb on + strand, within MPMX20_00234at 247.922 kb on + strand, within MPMX20_00234at 247.958 kb on - strand, within MPMX20_00234at 248.014 kb on - strand, within MPMX20_00234at 248.092 kb on + strandat 248.103 kb on + strandat 248.129 kb on + strandat 248.207 kb on - strandat 248.244 kb on - strandat 248.259 kb on + strandat 248.259 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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244,541 + MPMX20_00232 0.30 -3.9
244,554 - MPMX20_00232 0.31 -4.6
244,563 + MPMX20_00232 0.32 -1.9
244,576 - MPMX20_00232 0.33 -1.8
244,636 - MPMX20_00232 0.37 -2.1
244,636 - MPMX20_00232 0.37 -2.1
244,650 + MPMX20_00232 0.38 -3.6
244,650 + MPMX20_00232 0.38 -3.0
244,650 + MPMX20_00232 0.38 -3.2
244,658 - MPMX20_00232 0.39 -1.9
244,658 - MPMX20_00232 0.39 -3.7
244,757 + MPMX20_00232 0.47 -4.8
244,798 + MPMX20_00232 0.50 +0.0
244,798 + MPMX20_00232 0.50 -1.0
244,840 - MPMX20_00232 0.53 -1.9
244,841 - MPMX20_00232 0.53 -4.7
244,856 - MPMX20_00232 0.54 -2.2
244,865 - MPMX20_00232 0.55 -2.5
244,894 - MPMX20_00232 0.57 -3.0
244,900 + MPMX20_00232 0.58 -4.6
244,920 + MPMX20_00232 0.59 -3.7
244,930 + MPMX20_00232 0.60 -3.0
244,936 - MPMX20_00232 0.60 -3.4
244,968 + MPMX20_00232 0.63 -3.9
244,976 - MPMX20_00232 0.63 -1.0
244,988 - MPMX20_00232 0.64 +0.0
244,997 + MPMX20_00232 0.65 -3.0
244,997 + MPMX20_00232 0.65 -0.1
245,005 - MPMX20_00232 0.66 +0.7
245,055 + MPMX20_00232 0.70 -2.8
245,090 + MPMX20_00232 0.72 -4.1
245,098 - MPMX20_00232 0.73 -4.4
245,098 - MPMX20_00232 0.73 -4.2
245,098 - MPMX20_00232 0.73 -3.0
245,098 - MPMX20_00232 0.73 -1.1
245,098 - MPMX20_00232 0.73 -2.8
245,098 - MPMX20_00232 0.73 -3.9
245,242 + MPMX20_00232 0.84 -2.3
245,260 + MPMX20_00232 0.85 -2.5
245,260 + MPMX20_00232 0.85 +1.0
245,260 + MPMX20_00232 0.85 -5.1
245,260 + MPMX20_00232 0.85 -2.1
245,268 - MPMX20_00232 0.86 -3.4
245,268 - MPMX20_00232 0.86 -2.7
245,324 + -3.0
245,331 - -2.1
245,347 + -3.8
245,353 + -4.5
245,354 + -3.1
245,354 - -2.7
245,385 + -2.5
245,389 + -2.8
245,441 + -2.0
245,449 - -0.6
245,449 - -1.0
245,454 - -3.2
245,454 - -1.3
245,454 - -2.9
245,454 - -2.0
245,454 - -2.2
245,456 + -0.5
245,516 + -1.3
245,516 + +1.5
245,600 + -2.8
245,619 + -1.8
245,649 - -1.9
245,673 - -2.8
245,704 - -3.5
245,778 - MPMX20_00233 0.14 -1.4
245,871 + MPMX20_00233 0.19 -0.8
245,890 - MPMX20_00233 0.20 -1.8
246,061 + MPMX20_00233 0.30 -1.1
246,068 - MPMX20_00233 0.30 -0.5
246,102 - MPMX20_00233 0.32 -1.4
246,118 + MPMX20_00233 0.33 -0.5
246,194 - MPMX20_00233 0.38 -2.1
246,240 - MPMX20_00233 0.40 -1.6
246,268 + MPMX20_00233 0.42 -1.8
246,307 + MPMX20_00233 0.44 +0.4
246,334 - MPMX20_00233 0.46 -0.7
246,344 - MPMX20_00233 0.46 -0.9
246,379 + MPMX20_00233 0.48 -1.2
246,389 + MPMX20_00233 0.49 +1.0
246,392 - MPMX20_00233 0.49 -0.4
246,392 - MPMX20_00233 0.49 -1.8
246,395 + MPMX20_00233 0.49 -1.0
246,396 + MPMX20_00233 0.49 -2.3
246,397 - MPMX20_00233 0.50 +0.2
246,404 - MPMX20_00233 0.50 -1.2
246,441 + MPMX20_00233 0.52 +0.0
246,463 - MPMX20_00233 0.53 +0.4
246,520 - MPMX20_00233 0.57 -2.0
246,520 - MPMX20_00233 0.57 -1.9
246,522 - MPMX20_00233 0.57 -0.3
246,591 + MPMX20_00233 0.61 -0.3
246,632 - MPMX20_00233 0.63 -1.0
246,654 + MPMX20_00233 0.64 -2.0
246,662 - MPMX20_00233 0.65 -1.3
246,680 + MPMX20_00233 0.66 -2.9
246,814 + MPMX20_00233 0.74 -1.0
246,822 - MPMX20_00233 0.74 -1.2
246,824 + MPMX20_00233 0.74 -3.0
246,824 + MPMX20_00233 0.74 -1.8
246,832 - MPMX20_00233 0.75 -0.3
246,832 - MPMX20_00233 0.75 +0.0
246,871 - MPMX20_00233 0.77 -1.5
246,891 + MPMX20_00233 0.78 -2.3
247,016 + MPMX20_00233 0.85 +1.3
247,108 + -0.2
247,108 + -1.8
247,111 - -0.6
247,116 - -2.3
247,129 - -2.3
247,199 + -2.4
247,201 - -0.1
247,218 + -0.3
247,218 + -0.7
247,226 - -2.4
247,265 + +0.4
247,273 - -0.0
247,303 + -0.3
247,375 - +0.0
247,449 + MPMX20_00234 0.17 -1.1
247,449 + MPMX20_00234 0.17 -3.0
247,456 + MPMX20_00234 0.17 -0.6
247,479 + MPMX20_00234 0.20 +0.0
247,479 + MPMX20_00234 0.20 -0.1
247,487 - MPMX20_00234 0.21 -0.1
247,487 - MPMX20_00234 0.21 -1.1
247,487 - MPMX20_00234 0.21 -3.8
247,487 - MPMX20_00234 0.21 -1.9
247,556 + MPMX20_00234 0.29 -0.3
247,564 - MPMX20_00234 0.30 -0.6
247,569 - MPMX20_00234 0.31 -1.1
247,577 + MPMX20_00234 0.32 -1.1
247,585 - MPMX20_00234 0.33 -0.9
247,593 - MPMX20_00234 0.34 -2.4
247,598 - MPMX20_00234 0.35 +1.8
247,600 - MPMX20_00234 0.35 -2.6
247,620 + MPMX20_00234 0.37 -1.1
247,625 + MPMX20_00234 0.38 -0.4
247,625 + MPMX20_00234 0.38 +0.0
247,633 - MPMX20_00234 0.39 -1.4
247,718 + MPMX20_00234 0.49 -1.2
247,726 - MPMX20_00234 0.50 -2.5
247,751 - MPMX20_00234 0.53 -1.6
247,836 + MPMX20_00234 0.63 -1.3
247,836 + MPMX20_00234 0.63 -0.7
247,843 + MPMX20_00234 0.64 -1.1
247,856 - MPMX20_00234 0.66 -1.1
247,866 + MPMX20_00234 0.67 +0.0
247,896 + MPMX20_00234 0.71 -0.5
247,922 + MPMX20_00234 0.74 -0.3
247,958 - MPMX20_00234 0.78 -1.2
248,014 - MPMX20_00234 0.85 -0.3
248,092 + -0.2
248,103 + -2.2
248,129 + -1.5
248,207 - +1.2
248,244 - +1.0
248,259 + +0.6
248,259 + +1.0

Or see this region's nucleotide sequence