Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00239

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00237 and MPMX20_00238 are separated by 0 nucleotidesMPMX20_00238 and MPMX20_00239 are separated by 50 nucleotidesMPMX20_00239 and MPMX20_00240 are separated by 92 nucleotides MPMX20_00237: MPMX20_00237 - Dual-specificity RNA pseudouridine synthase RluF, at 253,898 to 254,767 _00237 MPMX20_00238: MPMX20_00238 - hypothetical protein, at 254,768 to 255,040 _00238 MPMX20_00239: MPMX20_00239 - Pantothenate precursors transporter PanS, at 255,091 to 256,035 _00239 MPMX20_00240: MPMX20_00240 - Lysine-sensitive aspartokinase 3, at 256,128 to 257,477 _00240 Position (kb) 255 256 257Strain fitness (log2 ratio) -2 -1 0 1 2at 254.113 kb on + strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.139 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.166 kb on - strand, within MPMX20_00237at 254.183 kb on - strand, within MPMX20_00237at 254.197 kb on - strand, within MPMX20_00237at 254.276 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.430 kb on + strand, within MPMX20_00237at 254.436 kb on + strand, within MPMX20_00237at 254.447 kb on + strand, within MPMX20_00237at 254.456 kb on + strand, within MPMX20_00237at 254.456 kb on - strand, within MPMX20_00237at 254.490 kb on - strand, within MPMX20_00237at 254.503 kb on + strand, within MPMX20_00237at 254.511 kb on - strand, within MPMX20_00237at 254.539 kb on - strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.677 kb on + strand, within MPMX20_00237at 254.766 kb on + strandat 254.785 kb on + strandat 254.785 kb on - strandat 254.789 kb on + strandat 254.789 kb on + strandat 254.789 kb on + strandat 254.797 kb on - strand, within MPMX20_00238at 254.797 kb on - strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.894 kb on - strand, within MPMX20_00238at 254.918 kb on - strand, within MPMX20_00238at 254.931 kb on + strand, within MPMX20_00238at 254.931 kb on + strand, within MPMX20_00238at 254.956 kb on - strand, within MPMX20_00238at 254.956 kb on - strand, within MPMX20_00238at 254.962 kb on - strand, within MPMX20_00238at 254.995 kb on + strand, within MPMX20_00238at 255.003 kb on - strand, within MPMX20_00238at 255.039 kb on - strandat 255.070 kb on + strandat 255.078 kb on - strandat 255.089 kb on + strandat 255.141 kb on - strandat 255.143 kb on + strandat 255.146 kb on - strandat 255.160 kb on - strandat 255.185 kb on + strandat 255.193 kb on - strand, within MPMX20_00239at 255.198 kb on - strand, within MPMX20_00239at 255.210 kb on - strand, within MPMX20_00239at 255.230 kb on + strand, within MPMX20_00239at 255.240 kb on + strand, within MPMX20_00239at 255.243 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.259 kb on + strand, within MPMX20_00239at 255.260 kb on - strand, within MPMX20_00239at 255.285 kb on + strand, within MPMX20_00239at 255.311 kb on - strand, within MPMX20_00239at 255.316 kb on - strand, within MPMX20_00239at 255.345 kb on + strand, within MPMX20_00239at 255.345 kb on - strand, within MPMX20_00239at 255.428 kb on + strand, within MPMX20_00239at 255.467 kb on + strand, within MPMX20_00239at 255.467 kb on + strand, within MPMX20_00239at 255.475 kb on - strand, within MPMX20_00239at 255.475 kb on - strand, within MPMX20_00239at 255.477 kb on + strand, within MPMX20_00239at 255.523 kb on + strand, within MPMX20_00239at 255.526 kb on - strand, within MPMX20_00239at 255.565 kb on - strand, within MPMX20_00239at 255.565 kb on - strand, within MPMX20_00239at 255.572 kb on + strand, within MPMX20_00239at 255.584 kb on + strand, within MPMX20_00239at 255.592 kb on - strand, within MPMX20_00239at 255.607 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.757 kb on + strand, within MPMX20_00239at 255.884 kb on + strand, within MPMX20_00239at 255.916 kb on - strand, within MPMX20_00239at 255.937 kb on - strand, within MPMX20_00239at 255.958 kb on - strandat 255.986 kb on + strandat 255.996 kb on - strandat 256.018 kb on + strandat 256.027 kb on + strandat 256.095 kb on + strandat 256.222 kb on - strandat 256.232 kb on - strandat 256.262 kb on - strandat 256.297 kb on + strand, within MPMX20_00240at 256.344 kb on + strand, within MPMX20_00240at 256.352 kb on - strand, within MPMX20_00240at 256.385 kb on + strand, within MPMX20_00240at 256.419 kb on - strand, within MPMX20_00240at 256.447 kb on - strand, within MPMX20_00240at 256.447 kb on - strand, within MPMX20_00240at 256.447 kb on - strand, within MPMX20_00240at 256.536 kb on + strand, within MPMX20_00240at 256.548 kb on - strand, within MPMX20_00240at 256.613 kb on + strand, within MPMX20_00240at 256.698 kb on + strand, within MPMX20_00240at 256.706 kb on - strand, within MPMX20_00240at 256.854 kb on + strand, within MPMX20_00240at 256.857 kb on - strand, within MPMX20_00240at 256.864 kb on + strand, within MPMX20_00240at 256.864 kb on + strand, within MPMX20_00240at 256.897 kb on + strand, within MPMX20_00240at 256.900 kb on - strand, within MPMX20_00240at 256.900 kb on - strand, within MPMX20_00240at 256.913 kb on - strand, within MPMX20_00240at 256.913 kb on - strand, within MPMX20_00240at 256.913 kb on - strand, within MPMX20_00240at 256.913 kb on - strand, within MPMX20_00240at 256.913 kb on - strand, within MPMX20_00240at 256.929 kb on + strand, within MPMX20_00240at 256.932 kb on - strand, within MPMX20_00240at 256.943 kb on + strand, within MPMX20_00240at 257.009 kb on + strand, within MPMX20_00240at 257.019 kb on + strand, within MPMX20_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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254,113 + MPMX20_00237 0.25 +1.2
254,121 - MPMX20_00237 0.26 -0.8
254,121 - MPMX20_00237 0.26 +0.1
254,139 + MPMX20_00237 0.28 +1.2
254,158 + MPMX20_00237 0.30 -1.2
254,158 + MPMX20_00237 0.30 -0.8
254,166 - MPMX20_00237 0.31 -0.6
254,183 - MPMX20_00237 0.33 -0.8
254,197 - MPMX20_00237 0.34 -0.3
254,276 - MPMX20_00237 0.43 +0.0
254,311 - MPMX20_00237 0.47 -0.1
254,311 - MPMX20_00237 0.47 +0.2
254,430 + MPMX20_00237 0.61 -1.6
254,436 + MPMX20_00237 0.62 -0.3
254,447 + MPMX20_00237 0.63 +0.4
254,456 + MPMX20_00237 0.64 +0.3
254,456 - MPMX20_00237 0.64 +0.3
254,490 - MPMX20_00237 0.68 +0.4
254,503 + MPMX20_00237 0.70 +0.2
254,511 - MPMX20_00237 0.70 +0.1
254,539 - MPMX20_00237 0.74 -1.9
254,584 + MPMX20_00237 0.79 +0.4
254,584 + MPMX20_00237 0.79 +0.2
254,593 + MPMX20_00237 0.80 +0.3
254,593 + MPMX20_00237 0.80 -0.6
254,593 + MPMX20_00237 0.80 +1.4
254,593 + MPMX20_00237 0.80 +0.2
254,593 + MPMX20_00237 0.80 +0.3
254,593 + MPMX20_00237 0.80 -0.0
254,601 - MPMX20_00237 0.81 +0.7
254,601 - MPMX20_00237 0.81 -0.4
254,601 - MPMX20_00237 0.81 -0.6
254,677 + MPMX20_00237 0.90 -0.7
254,766 + +1.4
254,785 + +0.2
254,785 - -1.7
254,789 + +0.4
254,789 + +0.2
254,789 + +0.3
254,797 - MPMX20_00238 0.11 -1.8
254,797 - MPMX20_00238 0.11 -0.8
254,874 + MPMX20_00238 0.39 -0.1
254,874 + MPMX20_00238 0.39 +1.2
254,874 + MPMX20_00238 0.39 +0.3
254,874 + MPMX20_00238 0.39 +0.4
254,882 - MPMX20_00238 0.42 +1.8
254,882 - MPMX20_00238 0.42 +0.7
254,882 - MPMX20_00238 0.42 -1.0
254,882 - MPMX20_00238 0.42 -0.2
254,894 - MPMX20_00238 0.46 -0.7
254,918 - MPMX20_00238 0.55 -1.3
254,931 + MPMX20_00238 0.60 -0.5
254,931 + MPMX20_00238 0.60 +0.7
254,956 - MPMX20_00238 0.69 -0.5
254,956 - MPMX20_00238 0.69 +0.8
254,962 - MPMX20_00238 0.71 -2.3
254,995 + MPMX20_00238 0.83 -0.2
255,003 - MPMX20_00238 0.86 +0.3
255,039 - +0.1
255,070 + -0.8
255,078 - +0.1
255,089 + +0.3
255,141 - +0.0
255,143 + -0.3
255,146 - +0.6
255,160 - -0.2
255,185 + +0.2
255,193 - MPMX20_00239 0.11 -0.4
255,198 - MPMX20_00239 0.11 -0.2
255,210 - MPMX20_00239 0.13 +0.3
255,230 + MPMX20_00239 0.15 +0.2
255,240 + MPMX20_00239 0.16 +0.1
255,243 - MPMX20_00239 0.16 -2.2
255,248 - MPMX20_00239 0.17 +1.2
255,248 - MPMX20_00239 0.17 -0.9
255,248 - MPMX20_00239 0.17 +1.4
255,259 + MPMX20_00239 0.18 -1.1
255,260 - MPMX20_00239 0.18 +0.2
255,285 + MPMX20_00239 0.21 +0.4
255,311 - MPMX20_00239 0.23 -0.5
255,316 - MPMX20_00239 0.24 +0.4
255,345 + MPMX20_00239 0.27 -0.0
255,345 - MPMX20_00239 0.27 +0.0
255,428 + MPMX20_00239 0.36 +0.5
255,467 + MPMX20_00239 0.40 +1.0
255,467 + MPMX20_00239 0.40 -2.1
255,475 - MPMX20_00239 0.41 +0.1
255,475 - MPMX20_00239 0.41 -0.2
255,477 + MPMX20_00239 0.41 +0.8
255,523 + MPMX20_00239 0.46 -2.2
255,526 - MPMX20_00239 0.46 +0.2
255,565 - MPMX20_00239 0.50 +0.2
255,565 - MPMX20_00239 0.50 -1.7
255,572 + MPMX20_00239 0.51 -0.3
255,584 + MPMX20_00239 0.52 +0.0
255,592 - MPMX20_00239 0.53 -1.2
255,607 - MPMX20_00239 0.55 +0.3
255,752 - MPMX20_00239 0.70 -0.3
255,752 - MPMX20_00239 0.70 -0.1
255,752 - MPMX20_00239 0.70 +0.3
255,757 + MPMX20_00239 0.70 +1.3
255,884 + MPMX20_00239 0.84 -0.6
255,916 - MPMX20_00239 0.87 -0.2
255,937 - MPMX20_00239 0.90 +0.6
255,958 - -0.3
255,986 + -0.3
255,996 - -0.2
256,018 + +1.2
256,027 + +2.4
256,095 + +1.1
256,222 - -1.0
256,232 - +0.8
256,262 - -0.7
256,297 + MPMX20_00240 0.13 +0.6
256,344 + MPMX20_00240 0.16 -0.8
256,352 - MPMX20_00240 0.17 -0.2
256,385 + MPMX20_00240 0.19 -1.2
256,419 - MPMX20_00240 0.22 -1.7
256,447 - MPMX20_00240 0.24 -2.5
256,447 - MPMX20_00240 0.24 +0.1
256,447 - MPMX20_00240 0.24 +0.6
256,536 + MPMX20_00240 0.30 -0.8
256,548 - MPMX20_00240 0.31 -0.7
256,613 + MPMX20_00240 0.36 -1.2
256,698 + MPMX20_00240 0.42 -0.5
256,706 - MPMX20_00240 0.43 -0.6
256,854 + MPMX20_00240 0.54 -0.7
256,857 - MPMX20_00240 0.54 -0.3
256,864 + MPMX20_00240 0.55 -0.6
256,864 + MPMX20_00240 0.55 -0.8
256,897 + MPMX20_00240 0.57 -1.1
256,900 - MPMX20_00240 0.57 -1.6
256,900 - MPMX20_00240 0.57 -0.1
256,913 - MPMX20_00240 0.58 -0.3
256,913 - MPMX20_00240 0.58 -1.0
256,913 - MPMX20_00240 0.58 -0.6
256,913 - MPMX20_00240 0.58 +0.1
256,913 - MPMX20_00240 0.58 -0.2
256,929 + MPMX20_00240 0.59 -0.1
256,932 - MPMX20_00240 0.60 -1.1
256,943 + MPMX20_00240 0.60 -1.6
257,009 + MPMX20_00240 0.65 +1.2
257,019 + MPMX20_00240 0.66 -2.4

Or see this region's nucleotide sequence