Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03571

Experiment: Itaconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03569 and MPMX20_03570 overlap by 4 nucleotidesMPMX20_03570 and MPMX20_03571 are separated by 264 nucleotidesMPMX20_03571 and MPMX20_03572 are separated by 158 nucleotidesMPMX20_03572 and MPMX20_03573 are separated by 161 nucleotidesMPMX20_03573 and MPMX20_03574 are separated by 52 nucleotidesMPMX20_03574 and MPMX20_03575 overlap by 61 nucleotidesMPMX20_03575 and MPMX20_03576 are separated by 4 nucleotides MPMX20_03569: MPMX20_03569 - Inner membrane protein YqaA, at 3,764,048 to 3,764,476 _03569 MPMX20_03570: MPMX20_03570 - Fructose-1-phosphate phosphatase YqaB, at 3,764,473 to 3,765,039 _03570 MPMX20_03571: MPMX20_03571 - tRNA-Arg, at 3,765,304 to 3,765,380 _03571 MPMX20_03572: MPMX20_03572 - tRNA-Arg, at 3,765,539 to 3,765,615 _03572 MPMX20_03573: MPMX20_03573 - tRNA-Arg, at 3,765,777 to 3,765,853 _03573 MPMX20_03574: MPMX20_03574 - tRNA-Arg, at 3,765,906 to 3,765,978 _03574 MPMX20_03575: MPMX20_03575 - tRNA-Arg, at 3,765,918 to 3,765,994 _03575 MPMX20_03576: MPMX20_03576 - tRNA-Ser, at 3,765,999 to 3,766,091 _03576 Position (kb) 3765 3766Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3764.314 kb on - strand, within MPMX20_03569at 3764.314 kb on - strand, within MPMX20_03569at 3764.322 kb on + strand, within MPMX20_03569at 3764.352 kb on + strand, within MPMX20_03569at 3764.357 kb on + strand, within MPMX20_03569at 3764.368 kb on + strand, within MPMX20_03569at 3764.372 kb on + strand, within MPMX20_03569at 3764.479 kb on - strandat 3764.484 kb on - strandat 3764.560 kb on - strand, within MPMX20_03570at 3764.580 kb on + strand, within MPMX20_03570at 3764.588 kb on - strand, within MPMX20_03570at 3764.667 kb on + strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.675 kb on - strand, within MPMX20_03570at 3764.708 kb on - strand, within MPMX20_03570at 3764.738 kb on - strand, within MPMX20_03570at 3764.783 kb on - strand, within MPMX20_03570at 3764.957 kb on + strand, within MPMX20_03570at 3764.960 kb on - strand, within MPMX20_03570at 3764.986 kb on + strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3764.994 kb on - strandat 3765.020 kb on + strandat 3765.022 kb on + strandat 3765.030 kb on - strandat 3765.191 kb on - strandat 3765.355 kb on + strand, within MPMX20_03571at 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.473 kb on - strandat 3765.475 kb on + strandat 3765.515 kb on + strandat 3765.528 kb on - strandat 3765.628 kb on - strandat 3765.647 kb on - strandat 3766.328 kb on + strandat 3766.328 kb on + strandat 3766.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Itaconic Acid (C)
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3,764,314 - MPMX20_03569 0.62 -0.1
3,764,314 - MPMX20_03569 0.62 -2.3
3,764,322 + MPMX20_03569 0.64 +2.2
3,764,352 + MPMX20_03569 0.71 +0.0
3,764,357 + MPMX20_03569 0.72 +1.8
3,764,368 + MPMX20_03569 0.75 -2.4
3,764,372 + MPMX20_03569 0.76 +0.3
3,764,479 - -3.4
3,764,484 - -1.6
3,764,560 - MPMX20_03570 0.15 -1.1
3,764,580 + MPMX20_03570 0.19 +0.0
3,764,588 - MPMX20_03570 0.20 -1.4
3,764,667 + MPMX20_03570 0.34 +0.6
3,764,675 - MPMX20_03570 0.36 +1.0
3,764,675 - MPMX20_03570 0.36 -1.7
3,764,675 - MPMX20_03570 0.36 +1.3
3,764,675 - MPMX20_03570 0.36 -1.4
3,764,675 - MPMX20_03570 0.36 +0.5
3,764,708 - MPMX20_03570 0.41 +0.2
3,764,738 - MPMX20_03570 0.47 +2.2
3,764,783 - MPMX20_03570 0.55 -1.5
3,764,957 + MPMX20_03570 0.85 -2.2
3,764,960 - MPMX20_03570 0.86 +1.0
3,764,986 + -0.8
3,764,994 - -3.0
3,764,994 - +0.4
3,764,994 - +1.2
3,765,020 + -2.6
3,765,022 + +0.4
3,765,030 - -2.5
3,765,191 - -0.3
3,765,355 + MPMX20_03571 0.66 -0.9
3,765,473 - -1.8
3,765,473 - -0.2
3,765,473 - +0.7
3,765,475 + -0.0
3,765,515 + -3.4
3,765,528 - +0.4
3,765,628 - -1.1
3,765,647 - +0.9
3,766,328 + -4.7
3,766,328 + -2.3
3,766,349 - +0.8

Or see this region's nucleotide sequence