Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01465

Experiment: Itaconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01464 and MPMX20_01465 are separated by 128 nucleotidesMPMX20_01465 and MPMX20_01466 are separated by 40 nucleotidesMPMX20_01466 and MPMX20_01467 are separated by 1 nucleotides MPMX20_01464: MPMX20_01464 - Choline trimethylamine-lyase activating enzyme, at 1,533,825 to 1,534,724 _01464 MPMX20_01465: MPMX20_01465 - Fructose-6-phosphate aldolase 1, at 1,534,853 to 1,535,515 _01465 MPMX20_01466: MPMX20_01466 - Molybdopterin-synthase adenylyltransferase, at 1,535,556 to 1,536,308 _01466 MPMX20_01467: MPMX20_01467 - Molybdopterin molybdenumtransferase, at 1,536,310 to 1,537,542 _01467 Position (kb) 1534 1535 1536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1533.869 kb on + strandat 1533.870 kb on - strandat 1533.887 kb on - strandat 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.959 kb on + strand, within MPMX20_01464at 1533.996 kb on + strand, within MPMX20_01464at 1533.996 kb on + strand, within MPMX20_01464at 1534.067 kb on - strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.225 kb on - strand, within MPMX20_01464at 1534.261 kb on + strand, within MPMX20_01464at 1534.263 kb on + strand, within MPMX20_01464at 1534.263 kb on + strand, within MPMX20_01464at 1534.271 kb on - strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.303 kb on - strand, within MPMX20_01464at 1534.307 kb on + strand, within MPMX20_01464at 1534.333 kb on - strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.348 kb on - strand, within MPMX20_01464at 1534.385 kb on + strand, within MPMX20_01464at 1534.432 kb on + strand, within MPMX20_01464at 1534.442 kb on + strand, within MPMX20_01464at 1534.460 kb on - strand, within MPMX20_01464at 1534.480 kb on + strand, within MPMX20_01464at 1534.505 kb on - strand, within MPMX20_01464at 1534.556 kb on + strand, within MPMX20_01464at 1534.657 kb on + strandat 1534.699 kb on + strandat 1534.699 kb on + strandat 1534.704 kb on + strandat 1534.707 kb on - strandat 1534.709 kb on + strandat 1534.805 kb on + strandat 1534.820 kb on + strandat 1534.922 kb on + strand, within MPMX20_01465at 1534.936 kb on + strand, within MPMX20_01465at 1535.029 kb on + strand, within MPMX20_01465at 1535.037 kb on - strand, within MPMX20_01465at 1535.037 kb on - strand, within MPMX20_01465at 1535.146 kb on + strand, within MPMX20_01465at 1535.173 kb on + strand, within MPMX20_01465at 1535.183 kb on + strand, within MPMX20_01465at 1535.183 kb on - strand, within MPMX20_01465at 1535.190 kb on + strand, within MPMX20_01465at 1535.193 kb on - strand, within MPMX20_01465at 1535.193 kb on - strand, within MPMX20_01465at 1535.195 kb on + strand, within MPMX20_01465at 1535.198 kb on + strand, within MPMX20_01465at 1535.331 kb on + strand, within MPMX20_01465at 1535.479 kb on + strandat 1535.484 kb on + strandat 1535.487 kb on - strandat 1535.570 kb on + strandat 1535.578 kb on - strandat 1535.615 kb on - strandat 1535.705 kb on + strand, within MPMX20_01466at 1535.746 kb on - strand, within MPMX20_01466at 1535.748 kb on + strand, within MPMX20_01466at 1535.748 kb on + strand, within MPMX20_01466at 1535.920 kb on + strand, within MPMX20_01466at 1535.983 kb on + strand, within MPMX20_01466at 1536.029 kb on - strand, within MPMX20_01466at 1536.034 kb on - strand, within MPMX20_01466at 1536.065 kb on - strand, within MPMX20_01466at 1536.072 kb on + strand, within MPMX20_01466at 1536.154 kb on + strand, within MPMX20_01466at 1536.180 kb on - strand, within MPMX20_01466at 1536.184 kb on + strand, within MPMX20_01466at 1536.259 kb on + strandat 1536.302 kb on - strandat 1536.327 kb on + strandat 1536.335 kb on - strandat 1536.360 kb on + strandat 1536.368 kb on - strandat 1536.398 kb on + strandat 1536.438 kb on + strand, within MPMX20_01467at 1536.449 kb on - strand, within MPMX20_01467

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Per-strain Table

Position Strand Gene LocusTag Fraction Itaconic Acid (C)
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1,533,869 + -0.9
1,533,870 - +1.0
1,533,887 - +2.8
1,533,919 + MPMX20_01464 0.10 -0.2
1,533,919 + MPMX20_01464 0.10 +0.8
1,533,919 + MPMX20_01464 0.10 +1.0
1,533,919 + MPMX20_01464 0.10 -2.0
1,533,919 + MPMX20_01464 0.10 +0.8
1,533,919 + MPMX20_01464 0.10 -2.6
1,533,919 + MPMX20_01464 0.10 +0.6
1,533,919 + MPMX20_01464 0.10 -2.9
1,533,919 + MPMX20_01464 0.10 +0.1
1,533,919 + MPMX20_01464 0.10 +0.2
1,533,919 + MPMX20_01464 0.10 +0.9
1,533,919 + MPMX20_01464 0.10 -2.1
1,533,919 + MPMX20_01464 0.10 -0.5
1,533,919 + MPMX20_01464 0.10 -2.3
1,533,919 + MPMX20_01464 0.10 -1.1
1,533,919 + MPMX20_01464 0.10 +0.8
1,533,919 + MPMX20_01464 0.10 +1.6
1,533,927 - MPMX20_01464 0.11 +1.3
1,533,927 - MPMX20_01464 0.11 -2.5
1,533,927 - MPMX20_01464 0.11 -3.1
1,533,927 - MPMX20_01464 0.11 -2.1
1,533,927 - MPMX20_01464 0.11 +1.9
1,533,927 - MPMX20_01464 0.11 +1.6
1,533,927 - MPMX20_01464 0.11 -0.5
1,533,927 - MPMX20_01464 0.11 +3.0
1,533,927 - MPMX20_01464 0.11 -3.5
1,533,938 + MPMX20_01464 0.13 +1.6
1,533,938 + MPMX20_01464 0.13 -0.8
1,533,938 + MPMX20_01464 0.13 +0.8
1,533,938 + MPMX20_01464 0.13 +0.7
1,533,938 + MPMX20_01464 0.13 -2.1
1,533,946 - MPMX20_01464 0.13 -2.5
1,533,946 - MPMX20_01464 0.13 +0.9
1,533,946 - MPMX20_01464 0.13 -1.4
1,533,946 - MPMX20_01464 0.13 -1.2
1,533,946 - MPMX20_01464 0.13 -0.7
1,533,959 + MPMX20_01464 0.15 -0.7
1,533,996 + MPMX20_01464 0.19 -1.0
1,533,996 + MPMX20_01464 0.19 -2.5
1,534,067 - MPMX20_01464 0.27 -0.8
1,534,186 + MPMX20_01464 0.40 -2.1
1,534,186 + MPMX20_01464 0.40 -1.0
1,534,186 + MPMX20_01464 0.40 +0.8
1,534,194 - MPMX20_01464 0.41 +0.8
1,534,194 - MPMX20_01464 0.41 +0.4
1,534,194 - MPMX20_01464 0.41 +2.2
1,534,225 - MPMX20_01464 0.44 +1.1
1,534,261 + MPMX20_01464 0.48 +1.9
1,534,263 + MPMX20_01464 0.49 +0.4
1,534,263 + MPMX20_01464 0.49 -0.1
1,534,271 - MPMX20_01464 0.50 -0.3
1,534,285 + MPMX20_01464 0.51 +0.7
1,534,285 + MPMX20_01464 0.51 -1.4
1,534,285 + MPMX20_01464 0.51 +0.4
1,534,285 + MPMX20_01464 0.51 +1.0
1,534,285 + MPMX20_01464 0.51 -0.8
1,534,285 + MPMX20_01464 0.51 +2.4
1,534,285 + MPMX20_01464 0.51 +0.9
1,534,293 - MPMX20_01464 0.52 +1.8
1,534,293 - MPMX20_01464 0.52 +0.9
1,534,293 - MPMX20_01464 0.52 -0.1
1,534,293 - MPMX20_01464 0.52 -1.4
1,534,293 - MPMX20_01464 0.52 -2.5
1,534,293 - MPMX20_01464 0.52 -4.5
1,534,293 - MPMX20_01464 0.52 +0.7
1,534,293 - MPMX20_01464 0.52 -0.1
1,534,293 - MPMX20_01464 0.52 -0.4
1,534,303 - MPMX20_01464 0.53 +0.3
1,534,307 + MPMX20_01464 0.54 +0.2
1,534,333 - MPMX20_01464 0.56 +1.3
1,534,340 + MPMX20_01464 0.57 +0.4
1,534,340 + MPMX20_01464 0.57 +0.1
1,534,340 + MPMX20_01464 0.57 -3.7
1,534,340 + MPMX20_01464 0.57 +0.9
1,534,340 + MPMX20_01464 0.57 +0.8
1,534,348 - MPMX20_01464 0.58 -1.4
1,534,385 + MPMX20_01464 0.62 -2.5
1,534,432 + MPMX20_01464 0.67 +2.9
1,534,442 + MPMX20_01464 0.69 +0.6
1,534,460 - MPMX20_01464 0.71 +1.8
1,534,480 + MPMX20_01464 0.73 -1.0
1,534,505 - MPMX20_01464 0.76 -0.7
1,534,556 + MPMX20_01464 0.81 +0.6
1,534,657 + -1.7
1,534,699 + +0.3
1,534,699 + +0.1
1,534,704 + -0.1
1,534,707 - +0.5
1,534,709 + -1.4
1,534,805 + +1.0
1,534,820 + -0.2
1,534,922 + MPMX20_01465 0.10 -1.3
1,534,936 + MPMX20_01465 0.13 -0.3
1,535,029 + MPMX20_01465 0.27 -0.5
1,535,037 - MPMX20_01465 0.28 -0.8
1,535,037 - MPMX20_01465 0.28 -1.2
1,535,146 + MPMX20_01465 0.44 -2.0
1,535,173 + MPMX20_01465 0.48 -0.7
1,535,183 + MPMX20_01465 0.50 +1.0
1,535,183 - MPMX20_01465 0.50 -2.1
1,535,190 + MPMX20_01465 0.51 -4.7
1,535,193 - MPMX20_01465 0.51 -1.2
1,535,193 - MPMX20_01465 0.51 +1.8
1,535,195 + MPMX20_01465 0.52 -2.9
1,535,198 + MPMX20_01465 0.52 +2.1
1,535,331 + MPMX20_01465 0.72 -1.6
1,535,479 + +0.5
1,535,484 + +1.0
1,535,487 - +1.3
1,535,570 + +1.4
1,535,578 - +1.6
1,535,615 - +1.7
1,535,705 + MPMX20_01466 0.20 -1.4
1,535,746 - MPMX20_01466 0.25 +1.5
1,535,748 + MPMX20_01466 0.25 +0.5
1,535,748 + MPMX20_01466 0.25 -2.6
1,535,920 + MPMX20_01466 0.48 +0.2
1,535,983 + MPMX20_01466 0.57 -0.3
1,536,029 - MPMX20_01466 0.63 -3.2
1,536,034 - MPMX20_01466 0.63 -2.0
1,536,065 - MPMX20_01466 0.68 -0.5
1,536,072 + MPMX20_01466 0.69 +1.7
1,536,154 + MPMX20_01466 0.79 +0.6
1,536,180 - MPMX20_01466 0.83 +1.4
1,536,184 + MPMX20_01466 0.83 -1.8
1,536,259 + +1.4
1,536,302 - -0.4
1,536,327 + +0.9
1,536,335 - +0.4
1,536,360 + +0.1
1,536,368 - -1.7
1,536,398 + -1.0
1,536,438 + MPMX20_01467 0.10 +0.5
1,536,449 - MPMX20_01467 0.11 +0.9

Or see this region's nucleotide sequence