Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00557

Experiment: Itaconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00556 and MPMX20_00557 are separated by 164 nucleotidesMPMX20_00557 and MPMX20_00558 are separated by 46 nucleotidesMPMX20_00558 and MPMX20_00559 are separated by 30 nucleotides MPMX20_00556: MPMX20_00556 - Ornithine carbamoyltransferase subunit F, at 581,587 to 582,591 _00556 MPMX20_00557: MPMX20_00557 - Regulator of ribonuclease activity B, at 582,756 to 583,181 _00557 MPMX20_00558: MPMX20_00558 - hypothetical protein, at 583,228 to 583,986 _00558 MPMX20_00559: MPMX20_00559 - hypothetical protein, at 584,017 to 584,745 _00559 Position (kb) 582 583 584Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 581.773 kb on + strand, within MPMX20_00556at 581.801 kb on - strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.826 kb on + strand, within MPMX20_00556at 581.827 kb on - strand, within MPMX20_00556at 581.834 kb on - strand, within MPMX20_00556at 581.858 kb on + strand, within MPMX20_00556at 581.873 kb on + strand, within MPMX20_00556at 581.895 kb on + strand, within MPMX20_00556at 581.903 kb on - strand, within MPMX20_00556at 581.981 kb on + strand, within MPMX20_00556at 582.050 kb on - strand, within MPMX20_00556at 582.052 kb on + strand, within MPMX20_00556at 582.205 kb on - strand, within MPMX20_00556at 582.227 kb on + strand, within MPMX20_00556at 582.227 kb on + strand, within MPMX20_00556at 582.233 kb on - strand, within MPMX20_00556at 582.235 kb on - strand, within MPMX20_00556at 582.255 kb on + strand, within MPMX20_00556at 582.263 kb on - strand, within MPMX20_00556at 582.263 kb on - strand, within MPMX20_00556at 582.287 kb on + strand, within MPMX20_00556at 582.382 kb on - strand, within MPMX20_00556at 582.392 kb on - strand, within MPMX20_00556at 582.407 kb on - strand, within MPMX20_00556at 582.497 kb on + strandat 582.505 kb on - strandat 582.527 kb on + strandat 582.527 kb on + strandat 582.540 kb on - strandat 582.576 kb on - strandat 582.690 kb on + strandat 582.690 kb on + strandat 582.698 kb on - strandat 582.698 kb on - strandat 582.703 kb on - strandat 582.737 kb on + strandat 582.745 kb on - strandat 582.746 kb on + strandat 582.773 kb on + strandat 582.835 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.848 kb on + strand, within MPMX20_00557at 582.853 kb on - strand, within MPMX20_00557at 582.854 kb on - strand, within MPMX20_00557at 582.856 kb on - strand, within MPMX20_00557at 582.863 kb on + strand, within MPMX20_00557at 582.923 kb on + strand, within MPMX20_00557at 582.933 kb on - strand, within MPMX20_00557at 582.948 kb on - strand, within MPMX20_00557at 582.957 kb on - strand, within MPMX20_00557at 583.012 kb on + strand, within MPMX20_00557at 583.012 kb on + strand, within MPMX20_00557at 583.020 kb on - strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.104 kb on + strand, within MPMX20_00557at 583.112 kb on + strand, within MPMX20_00557at 583.263 kb on - strandat 583.297 kb on + strandat 583.305 kb on - strand, within MPMX20_00558at 583.305 kb on - strand, within MPMX20_00558at 583.356 kb on + strand, within MPMX20_00558at 583.364 kb on - strand, within MPMX20_00558at 583.365 kb on - strand, within MPMX20_00558at 583.437 kb on + strand, within MPMX20_00558at 583.444 kb on - strand, within MPMX20_00558at 583.461 kb on - strand, within MPMX20_00558at 583.565 kb on + strand, within MPMX20_00558at 583.578 kb on - strand, within MPMX20_00558at 583.609 kb on - strand, within MPMX20_00558at 583.616 kb on + strand, within MPMX20_00558at 583.655 kb on + strand, within MPMX20_00558at 583.668 kb on + strand, within MPMX20_00558at 583.705 kb on - strand, within MPMX20_00558at 583.714 kb on + strand, within MPMX20_00558at 583.728 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.856 kb on + strand, within MPMX20_00558at 583.862 kb on + strand, within MPMX20_00558at 583.864 kb on - strand, within MPMX20_00558at 583.873 kb on + strand, within MPMX20_00558at 583.939 kb on - strandat 584.044 kb on - strandat 584.045 kb on + strandat 584.053 kb on + strandat 584.053 kb on + strandat 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.108 kb on + strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.116 kb on - strand, within MPMX20_00559at 584.121 kb on + strand, within MPMX20_00559at 584.129 kb on - strand, within MPMX20_00559at 584.141 kb on - strand, within MPMX20_00559at 584.175 kb on - strand, within MPMX20_00559at 584.177 kb on - strand, within MPMX20_00559

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Per-strain Table

Position Strand Gene LocusTag Fraction Itaconic Acid (C)
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581,773 + MPMX20_00556 0.19 -0.6
581,801 - MPMX20_00556 0.21 -1.9
581,826 + MPMX20_00556 0.24 +0.4
581,826 + MPMX20_00556 0.24 -2.8
581,826 + MPMX20_00556 0.24 -0.9
581,826 + MPMX20_00556 0.24 -4.1
581,827 - MPMX20_00556 0.24 -3.3
581,834 - MPMX20_00556 0.25 -1.4
581,858 + MPMX20_00556 0.27 -2.4
581,873 + MPMX20_00556 0.28 -0.8
581,895 + MPMX20_00556 0.31 +1.1
581,903 - MPMX20_00556 0.31 -4.9
581,981 + MPMX20_00556 0.39 -0.6
582,050 - MPMX20_00556 0.46 -0.2
582,052 + MPMX20_00556 0.46 -3.9
582,205 - MPMX20_00556 0.61 -1.0
582,227 + MPMX20_00556 0.64 -1.9
582,227 + MPMX20_00556 0.64 -2.0
582,233 - MPMX20_00556 0.64 -2.3
582,235 - MPMX20_00556 0.64 -1.8
582,255 + MPMX20_00556 0.66 -2.3
582,263 - MPMX20_00556 0.67 -1.4
582,263 - MPMX20_00556 0.67 -0.0
582,287 + MPMX20_00556 0.70 -2.4
582,382 - MPMX20_00556 0.79 -1.7
582,392 - MPMX20_00556 0.80 -3.8
582,407 - MPMX20_00556 0.82 -2.6
582,497 + -4.1
582,505 - -0.3
582,527 + -3.1
582,527 + -4.1
582,540 - -2.8
582,576 - +0.0
582,690 + +1.4
582,690 + -3.6
582,698 - -0.2
582,698 - -0.1
582,703 - +0.2
582,737 + -3.0
582,745 - -3.1
582,746 + +1.5
582,773 + -1.5
582,835 + MPMX20_00557 0.19 -3.8
582,848 + MPMX20_00557 0.22 -0.9
582,848 + MPMX20_00557 0.22 -3.5
582,848 + MPMX20_00557 0.22 -3.2
582,848 + MPMX20_00557 0.22 -2.8
582,853 - MPMX20_00557 0.23 -2.2
582,854 - MPMX20_00557 0.23 -1.0
582,856 - MPMX20_00557 0.23 +0.3
582,863 + MPMX20_00557 0.25 -0.2
582,923 + MPMX20_00557 0.39 -1.6
582,933 - MPMX20_00557 0.42 -3.7
582,948 - MPMX20_00557 0.45 -1.2
582,957 - MPMX20_00557 0.47 -0.9
583,012 + MPMX20_00557 0.60 -0.2
583,012 + MPMX20_00557 0.60 -0.8
583,020 - MPMX20_00557 0.62 +1.0
583,104 + MPMX20_00557 0.82 +0.2
583,104 + MPMX20_00557 0.82 -2.8
583,112 + MPMX20_00557 0.84 -0.3
583,263 - +0.4
583,297 + +0.4
583,305 - MPMX20_00558 0.10 +1.4
583,305 - MPMX20_00558 0.10 -1.4
583,356 + MPMX20_00558 0.17 -2.0
583,364 - MPMX20_00558 0.18 -3.4
583,365 - MPMX20_00558 0.18 -1.5
583,437 + MPMX20_00558 0.28 +2.5
583,444 - MPMX20_00558 0.28 +0.6
583,461 - MPMX20_00558 0.31 -2.5
583,565 + MPMX20_00558 0.44 +0.9
583,578 - MPMX20_00558 0.46 +0.8
583,609 - MPMX20_00558 0.50 -2.2
583,616 + MPMX20_00558 0.51 -0.3
583,655 + MPMX20_00558 0.56 -0.2
583,668 + MPMX20_00558 0.58 +2.6
583,705 - MPMX20_00558 0.63 +0.4
583,714 + MPMX20_00558 0.64 -0.5
583,728 + MPMX20_00558 0.66 +0.5
583,856 + MPMX20_00558 0.83 +0.4
583,856 + MPMX20_00558 0.83 -0.1
583,856 + MPMX20_00558 0.83 +2.8
583,862 + MPMX20_00558 0.84 +0.6
583,864 - MPMX20_00558 0.84 +0.4
583,873 + MPMX20_00558 0.85 +0.4
583,939 - -1.3
584,044 - -0.3
584,045 + -2.2
584,053 + -3.0
584,053 + +0.4
584,108 + MPMX20_00559 0.12 -1.4
584,108 + MPMX20_00559 0.12 -2.0
584,108 + MPMX20_00559 0.12 +1.0
584,108 + MPMX20_00559 0.12 -0.5
584,116 - MPMX20_00559 0.14 -0.7
584,116 - MPMX20_00559 0.14 -1.0
584,116 - MPMX20_00559 0.14 -2.9
584,116 - MPMX20_00559 0.14 -0.6
584,121 + MPMX20_00559 0.14 +0.5
584,129 - MPMX20_00559 0.15 +0.9
584,141 - MPMX20_00559 0.17 -1.3
584,175 - MPMX20_00559 0.22 -1.1
584,177 - MPMX20_00559 0.22 +1.6

Or see this region's nucleotide sequence