Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02474

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02473 and MPMX20_02474 are separated by 88 nucleotidesMPMX20_02474 and MPMX20_02475 overlap by 4 nucleotidesMPMX20_02475 and MPMX20_02476 overlap by 14 nucleotides MPMX20_02473: MPMX20_02473 - Psp operon transcriptional activator, at 2,612,916 to 2,613,893 _02473 MPMX20_02474: MPMX20_02474 - Peptide transport periplasmic protein SapA, at 2,613,982 to 2,615,622 _02474 MPMX20_02475: MPMX20_02475 - Putrescine export system permease protein SapB, at 2,615,619 to 2,616,584 _02475 MPMX20_02476: MPMX20_02476 - Putrescine export system permease protein SapC, at 2,616,571 to 2,617,461 _02476 Position (kb) 2613 2614 2615 2616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2612.986 kb on - strandat 2613.090 kb on - strand, within MPMX20_02473at 2613.099 kb on + strand, within MPMX20_02473at 2613.099 kb on + strand, within MPMX20_02473at 2613.109 kb on - strand, within MPMX20_02473at 2613.153 kb on + strand, within MPMX20_02473at 2613.342 kb on + strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.350 kb on - strand, within MPMX20_02473at 2613.377 kb on + strand, within MPMX20_02473at 2613.435 kb on + strand, within MPMX20_02473at 2613.443 kb on - strand, within MPMX20_02473at 2613.483 kb on + strand, within MPMX20_02473at 2613.511 kb on - strand, within MPMX20_02473at 2613.558 kb on - strand, within MPMX20_02473at 2613.619 kb on + strand, within MPMX20_02473at 2613.624 kb on + strand, within MPMX20_02473at 2613.626 kb on - strand, within MPMX20_02473at 2613.662 kb on + strand, within MPMX20_02473at 2613.662 kb on + strand, within MPMX20_02473at 2613.723 kb on - strand, within MPMX20_02473at 2613.724 kb on - strand, within MPMX20_02473at 2613.724 kb on - strand, within MPMX20_02473at 2613.727 kb on + strand, within MPMX20_02473at 2613.766 kb on + strand, within MPMX20_02473at 2613.780 kb on - strand, within MPMX20_02473at 2613.791 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.793 kb on + strand, within MPMX20_02473at 2613.800 kb on - strandat 2613.801 kb on - strandat 2613.801 kb on - strandat 2613.857 kb on + strandat 2613.905 kb on - strandat 2613.905 kb on - strandat 2613.905 kb on - strandat 2613.941 kb on + strandat 2613.941 kb on + strandat 2613.947 kb on - strandat 2614.018 kb on - strandat 2614.020 kb on + strandat 2614.109 kb on - strandat 2614.115 kb on - strandat 2614.115 kb on - strandat 2614.157 kb on + strand, within MPMX20_02474at 2614.171 kb on + strand, within MPMX20_02474at 2614.243 kb on + strand, within MPMX20_02474at 2614.304 kb on + strand, within MPMX20_02474at 2614.446 kb on + strand, within MPMX20_02474at 2614.507 kb on + strand, within MPMX20_02474at 2614.530 kb on - strand, within MPMX20_02474at 2614.553 kb on - strand, within MPMX20_02474at 2614.858 kb on + strand, within MPMX20_02474at 2614.863 kb on + strand, within MPMX20_02474at 2614.866 kb on - strand, within MPMX20_02474at 2614.905 kb on + strand, within MPMX20_02474at 2614.913 kb on - strand, within MPMX20_02474at 2614.915 kb on + strand, within MPMX20_02474at 2614.979 kb on - strand, within MPMX20_02474at 2615.023 kb on + strand, within MPMX20_02474at 2615.023 kb on + strand, within MPMX20_02474at 2615.025 kb on - strand, within MPMX20_02474at 2615.031 kb on - strand, within MPMX20_02474at 2615.031 kb on - strand, within MPMX20_02474at 2615.079 kb on + strand, within MPMX20_02474at 2615.102 kb on + strand, within MPMX20_02474at 2615.123 kb on - strand, within MPMX20_02474at 2615.232 kb on - strand, within MPMX20_02474at 2615.329 kb on + strand, within MPMX20_02474at 2615.337 kb on - strand, within MPMX20_02474at 2615.425 kb on - strand, within MPMX20_02474at 2615.499 kb on + strandat 2615.499 kb on + strandat 2615.576 kb on + strandat 2615.685 kb on - strandat 2615.709 kb on - strandat 2615.823 kb on - strand, within MPMX20_02475at 2615.823 kb on - strand, within MPMX20_02475at 2615.823 kb on - strand, within MPMX20_02475at 2615.825 kb on + strand, within MPMX20_02475at 2615.848 kb on + strand, within MPMX20_02475at 2615.848 kb on + strand, within MPMX20_02475at 2615.848 kb on + strand, within MPMX20_02475at 2615.848 kb on + strand, within MPMX20_02475at 2615.856 kb on - strand, within MPMX20_02475at 2615.960 kb on + strand, within MPMX20_02475at 2615.964 kb on - strand, within MPMX20_02475at 2616.022 kb on + strand, within MPMX20_02475at 2616.027 kb on + strand, within MPMX20_02475at 2616.126 kb on + strand, within MPMX20_02475at 2616.172 kb on + strand, within MPMX20_02475at 2616.235 kb on + strand, within MPMX20_02475at 2616.243 kb on - strand, within MPMX20_02475at 2616.243 kb on - strand, within MPMX20_02475at 2616.243 kb on - strand, within MPMX20_02475at 2616.328 kb on - strand, within MPMX20_02475at 2616.412 kb on + strand, within MPMX20_02475at 2616.425 kb on - strand, within MPMX20_02475at 2616.425 kb on - strand, within MPMX20_02475at 2616.542 kb on + strandat 2616.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,612,986 - +0.4
2,613,090 - MPMX20_02473 0.18 +1.1
2,613,099 + MPMX20_02473 0.19 -1.1
2,613,099 + MPMX20_02473 0.19 -0.1
2,613,109 - MPMX20_02473 0.20 +0.0
2,613,153 + MPMX20_02473 0.24 -2.4
2,613,342 + MPMX20_02473 0.44 +0.7
2,613,350 - MPMX20_02473 0.44 +0.8
2,613,350 - MPMX20_02473 0.44 +0.7
2,613,350 - MPMX20_02473 0.44 +0.5
2,613,377 + MPMX20_02473 0.47 +0.3
2,613,435 + MPMX20_02473 0.53 -1.1
2,613,443 - MPMX20_02473 0.54 -0.9
2,613,483 + MPMX20_02473 0.58 +1.5
2,613,511 - MPMX20_02473 0.61 -2.1
2,613,558 - MPMX20_02473 0.66 +0.2
2,613,619 + MPMX20_02473 0.72 -0.1
2,613,624 + MPMX20_02473 0.72 -0.4
2,613,626 - MPMX20_02473 0.73 +1.8
2,613,662 + MPMX20_02473 0.76 -0.6
2,613,662 + MPMX20_02473 0.76 -0.2
2,613,723 - MPMX20_02473 0.83 +0.2
2,613,724 - MPMX20_02473 0.83 -1.3
2,613,724 - MPMX20_02473 0.83 +0.2
2,613,727 + MPMX20_02473 0.83 -1.1
2,613,766 + MPMX20_02473 0.87 -0.5
2,613,780 - MPMX20_02473 0.88 -1.0
2,613,791 + MPMX20_02473 0.89 -0.9
2,613,793 + MPMX20_02473 0.90 -0.7
2,613,793 + MPMX20_02473 0.90 +0.4
2,613,793 + MPMX20_02473 0.90 +0.4
2,613,800 - +0.3
2,613,801 - +0.1
2,613,801 - -1.1
2,613,857 + +0.6
2,613,905 - -0.1
2,613,905 - -0.6
2,613,905 - -1.3
2,613,941 + +0.3
2,613,941 + -1.7
2,613,947 - +0.7
2,614,018 - -2.6
2,614,020 + -3.0
2,614,109 - -1.9
2,614,115 - +0.6
2,614,115 - -3.0
2,614,157 + MPMX20_02474 0.11 -1.1
2,614,171 + MPMX20_02474 0.12 +1.0
2,614,243 + MPMX20_02474 0.16 +0.7
2,614,304 + MPMX20_02474 0.20 -0.6
2,614,446 + MPMX20_02474 0.28 +0.4
2,614,507 + MPMX20_02474 0.32 -0.0
2,614,530 - MPMX20_02474 0.33 +0.4
2,614,553 - MPMX20_02474 0.35 -1.6
2,614,858 + MPMX20_02474 0.53 -0.1
2,614,863 + MPMX20_02474 0.54 +0.9
2,614,866 - MPMX20_02474 0.54 -2.1
2,614,905 + MPMX20_02474 0.56 +0.4
2,614,913 - MPMX20_02474 0.57 -0.6
2,614,915 + MPMX20_02474 0.57 -2.3
2,614,979 - MPMX20_02474 0.61 -1.6
2,615,023 + MPMX20_02474 0.63 -0.1
2,615,023 + MPMX20_02474 0.63 -1.1
2,615,025 - MPMX20_02474 0.64 +1.7
2,615,031 - MPMX20_02474 0.64 +0.3
2,615,031 - MPMX20_02474 0.64 -1.6
2,615,079 + MPMX20_02474 0.67 -0.2
2,615,102 + MPMX20_02474 0.68 -2.1
2,615,123 - MPMX20_02474 0.70 -2.0
2,615,232 - MPMX20_02474 0.76 +1.0
2,615,329 + MPMX20_02474 0.82 -1.5
2,615,337 - MPMX20_02474 0.83 -2.3
2,615,425 - MPMX20_02474 0.88 -2.9
2,615,499 + -0.8
2,615,499 + -1.2
2,615,576 + -0.7
2,615,685 - +1.7
2,615,709 - -2.1
2,615,823 - MPMX20_02475 0.21 -2.5
2,615,823 - MPMX20_02475 0.21 -1.6
2,615,823 - MPMX20_02475 0.21 -2.3
2,615,825 + MPMX20_02475 0.21 -0.6
2,615,848 + MPMX20_02475 0.24 -1.1
2,615,848 + MPMX20_02475 0.24 -1.1
2,615,848 + MPMX20_02475 0.24 -1.1
2,615,848 + MPMX20_02475 0.24 -2.1
2,615,856 - MPMX20_02475 0.25 -1.6
2,615,960 + MPMX20_02475 0.35 -0.1
2,615,964 - MPMX20_02475 0.36 -1.7
2,616,022 + MPMX20_02475 0.42 -0.3
2,616,027 + MPMX20_02475 0.42 -0.6
2,616,126 + MPMX20_02475 0.52 -2.1
2,616,172 + MPMX20_02475 0.57 -1.4
2,616,235 + MPMX20_02475 0.64 -0.5
2,616,243 - MPMX20_02475 0.65 -0.1
2,616,243 - MPMX20_02475 0.65 -0.1
2,616,243 - MPMX20_02475 0.65 -1.1
2,616,328 - MPMX20_02475 0.73 -1.1
2,616,412 + MPMX20_02475 0.82 -2.9
2,616,425 - MPMX20_02475 0.83 -1.9
2,616,425 - MPMX20_02475 0.83 -2.1
2,616,542 + -1.4
2,616,585 + -1.0

Or see this region's nucleotide sequence