Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00237

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00236 and MPMX20_00237 are separated by 134 nucleotidesMPMX20_00237 and MPMX20_00238 are separated by 0 nucleotidesMPMX20_00238 and MPMX20_00239 are separated by 50 nucleotides MPMX20_00236: MPMX20_00236 - hypothetical protein, at 252,132 to 253,763 _00236 MPMX20_00237: MPMX20_00237 - Dual-specificity RNA pseudouridine synthase RluF, at 253,898 to 254,767 _00237 MPMX20_00238: MPMX20_00238 - hypothetical protein, at 254,768 to 255,040 _00238 MPMX20_00239: MPMX20_00239 - Pantothenate precursors transporter PanS, at 255,091 to 256,035 _00239 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 252.920 kb on + strand, within MPMX20_00236at 252.946 kb on - strand, within MPMX20_00236at 252.946 kb on - strand, within MPMX20_00236at 252.951 kb on - strand, within MPMX20_00236at 252.991 kb on + strand, within MPMX20_00236at 253.017 kb on + strand, within MPMX20_00236at 253.017 kb on + strand, within MPMX20_00236at 253.086 kb on + strand, within MPMX20_00236at 253.096 kb on + strand, within MPMX20_00236at 253.096 kb on + strand, within MPMX20_00236at 253.164 kb on + strand, within MPMX20_00236at 253.166 kb on - strand, within MPMX20_00236at 253.190 kb on + strand, within MPMX20_00236at 253.223 kb on + strand, within MPMX20_00236at 253.237 kb on + strand, within MPMX20_00236at 253.285 kb on - strand, within MPMX20_00236at 253.370 kb on + strand, within MPMX20_00236at 253.425 kb on - strand, within MPMX20_00236at 253.485 kb on - strand, within MPMX20_00236at 253.570 kb on + strand, within MPMX20_00236at 253.594 kb on - strand, within MPMX20_00236at 253.637 kb on - strandat 253.650 kb on + strandat 253.651 kb on + strandat 253.709 kb on + strandat 253.709 kb on + strandat 253.720 kb on + strandat 253.728 kb on - strandat 253.734 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.808 kb on + strandat 253.816 kb on - strandat 253.816 kb on - strandat 253.816 kb on - strandat 253.858 kb on + strandat 253.858 kb on + strandat 253.896 kb on - strandat 253.982 kb on + strandat 253.985 kb on - strand, within MPMX20_00237at 253.987 kb on + strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 253.995 kb on - strand, within MPMX20_00237at 254.071 kb on - strand, within MPMX20_00237at 254.078 kb on - strand, within MPMX20_00237at 254.113 kb on + strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.121 kb on - strand, within MPMX20_00237at 254.139 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.158 kb on + strand, within MPMX20_00237at 254.166 kb on - strand, within MPMX20_00237at 254.183 kb on - strand, within MPMX20_00237at 254.197 kb on - strand, within MPMX20_00237at 254.276 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.311 kb on - strand, within MPMX20_00237at 254.430 kb on + strand, within MPMX20_00237at 254.436 kb on + strand, within MPMX20_00237at 254.447 kb on + strand, within MPMX20_00237at 254.456 kb on + strand, within MPMX20_00237at 254.456 kb on - strand, within MPMX20_00237at 254.490 kb on - strand, within MPMX20_00237at 254.503 kb on + strand, within MPMX20_00237at 254.511 kb on - strand, within MPMX20_00237at 254.539 kb on - strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.584 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.593 kb on + strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.601 kb on - strand, within MPMX20_00237at 254.677 kb on + strand, within MPMX20_00237at 254.766 kb on + strandat 254.785 kb on + strandat 254.785 kb on - strandat 254.789 kb on + strandat 254.789 kb on + strandat 254.789 kb on + strandat 254.797 kb on - strand, within MPMX20_00238at 254.797 kb on - strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.874 kb on + strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.882 kb on - strand, within MPMX20_00238at 254.894 kb on - strand, within MPMX20_00238at 254.918 kb on - strand, within MPMX20_00238at 254.931 kb on + strand, within MPMX20_00238at 254.931 kb on + strand, within MPMX20_00238at 254.956 kb on - strand, within MPMX20_00238at 254.956 kb on - strand, within MPMX20_00238at 254.962 kb on - strand, within MPMX20_00238at 254.995 kb on + strand, within MPMX20_00238at 255.003 kb on - strand, within MPMX20_00238at 255.039 kb on - strandat 255.070 kb on + strandat 255.078 kb on - strandat 255.089 kb on + strandat 255.141 kb on - strandat 255.143 kb on + strandat 255.146 kb on - strandat 255.160 kb on - strandat 255.185 kb on + strandat 255.193 kb on - strand, within MPMX20_00239at 255.198 kb on - strand, within MPMX20_00239at 255.210 kb on - strand, within MPMX20_00239at 255.230 kb on + strand, within MPMX20_00239at 255.240 kb on + strand, within MPMX20_00239at 255.243 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.248 kb on - strand, within MPMX20_00239at 255.259 kb on + strand, within MPMX20_00239at 255.260 kb on - strand, within MPMX20_00239at 255.285 kb on + strand, within MPMX20_00239at 255.311 kb on - strand, within MPMX20_00239at 255.316 kb on - strand, within MPMX20_00239at 255.345 kb on + strand, within MPMX20_00239at 255.345 kb on - strand, within MPMX20_00239at 255.428 kb on + strand, within MPMX20_00239at 255.467 kb on + strand, within MPMX20_00239at 255.467 kb on + strand, within MPMX20_00239at 255.475 kb on - strand, within MPMX20_00239at 255.475 kb on - strand, within MPMX20_00239at 255.477 kb on + strand, within MPMX20_00239at 255.523 kb on + strand, within MPMX20_00239at 255.526 kb on - strand, within MPMX20_00239at 255.565 kb on - strand, within MPMX20_00239at 255.565 kb on - strand, within MPMX20_00239at 255.572 kb on + strand, within MPMX20_00239at 255.584 kb on + strand, within MPMX20_00239at 255.592 kb on - strand, within MPMX20_00239at 255.607 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.752 kb on - strand, within MPMX20_00239at 255.757 kb on + strand, within MPMX20_00239

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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252,920 + MPMX20_00236 0.48 -2.5
252,946 - MPMX20_00236 0.50 +1.1
252,946 - MPMX20_00236 0.50 +2.8
252,951 - MPMX20_00236 0.50 +0.3
252,991 + MPMX20_00236 0.53 +0.6
253,017 + MPMX20_00236 0.54 +2.0
253,017 + MPMX20_00236 0.54 -2.6
253,086 + MPMX20_00236 0.58 -0.9
253,096 + MPMX20_00236 0.59 +0.4
253,096 + MPMX20_00236 0.59 -0.0
253,164 + MPMX20_00236 0.63 +0.3
253,166 - MPMX20_00236 0.63 +0.2
253,190 + MPMX20_00236 0.65 +0.2
253,223 + MPMX20_00236 0.67 +0.7
253,237 + MPMX20_00236 0.68 +0.9
253,285 - MPMX20_00236 0.71 -2.3
253,370 + MPMX20_00236 0.76 +0.8
253,425 - MPMX20_00236 0.79 -0.4
253,485 - MPMX20_00236 0.83 -1.9
253,570 + MPMX20_00236 0.88 -1.0
253,594 - MPMX20_00236 0.90 +0.5
253,637 - +1.2
253,650 + -0.6
253,651 + +0.8
253,709 + +1.1
253,709 + -0.7
253,720 + -1.3
253,728 - -0.5
253,734 + +0.2
253,808 + -0.3
253,808 + -2.4
253,808 + -1.6
253,808 + +1.3
253,808 + -2.7
253,816 - +0.7
253,816 - +0.2
253,816 - +0.3
253,858 + -0.3
253,858 + -0.2
253,896 - +1.0
253,982 + +0.7
253,985 - MPMX20_00237 0.10 -0.7
253,987 + MPMX20_00237 0.10 +0.8
253,995 - MPMX20_00237 0.11 +0.7
253,995 - MPMX20_00237 0.11 -0.0
253,995 - MPMX20_00237 0.11 +0.0
254,071 - MPMX20_00237 0.20 -0.6
254,078 - MPMX20_00237 0.21 -1.6
254,113 + MPMX20_00237 0.25 -1.3
254,121 - MPMX20_00237 0.26 +0.0
254,121 - MPMX20_00237 0.26 +1.0
254,139 + MPMX20_00237 0.28 -0.5
254,158 + MPMX20_00237 0.30 -0.1
254,158 + MPMX20_00237 0.30 -0.5
254,166 - MPMX20_00237 0.31 -1.0
254,183 - MPMX20_00237 0.33 -0.1
254,197 - MPMX20_00237 0.34 -1.0
254,276 - MPMX20_00237 0.43 +0.8
254,311 - MPMX20_00237 0.47 +0.6
254,311 - MPMX20_00237 0.47 -0.5
254,430 + MPMX20_00237 0.61 -0.3
254,436 + MPMX20_00237 0.62 +2.0
254,447 + MPMX20_00237 0.63 +1.5
254,456 + MPMX20_00237 0.64 -3.7
254,456 - MPMX20_00237 0.64 +0.7
254,490 - MPMX20_00237 0.68 -0.3
254,503 + MPMX20_00237 0.70 +1.3
254,511 - MPMX20_00237 0.70 -0.3
254,539 - MPMX20_00237 0.74 -1.6
254,584 + MPMX20_00237 0.79 -0.1
254,584 + MPMX20_00237 0.79 -0.2
254,593 + MPMX20_00237 0.80 -0.5
254,593 + MPMX20_00237 0.80 -0.2
254,593 + MPMX20_00237 0.80 -1.2
254,593 + MPMX20_00237 0.80 -0.0
254,593 + MPMX20_00237 0.80 -2.5
254,593 + MPMX20_00237 0.80 -1.6
254,601 - MPMX20_00237 0.81 +0.4
254,601 - MPMX20_00237 0.81 +0.8
254,601 - MPMX20_00237 0.81 +1.6
254,677 + MPMX20_00237 0.90 -0.1
254,766 + -1.9
254,785 + -0.6
254,785 - -1.4
254,789 + +0.8
254,789 + +0.1
254,789 + -0.0
254,797 - MPMX20_00238 0.11 -1.5
254,797 - MPMX20_00238 0.11 +0.2
254,874 + MPMX20_00238 0.39 +0.2
254,874 + MPMX20_00238 0.39 +0.4
254,874 + MPMX20_00238 0.39 +1.3
254,874 + MPMX20_00238 0.39 -1.0
254,882 - MPMX20_00238 0.42 +2.3
254,882 - MPMX20_00238 0.42 +0.2
254,882 - MPMX20_00238 0.42 -0.2
254,882 - MPMX20_00238 0.42 -1.1
254,894 - MPMX20_00238 0.46 -1.4
254,918 - MPMX20_00238 0.55 -1.0
254,931 + MPMX20_00238 0.60 +1.1
254,931 + MPMX20_00238 0.60 -1.0
254,956 - MPMX20_00238 0.69 +0.6
254,956 - MPMX20_00238 0.69 +0.6
254,962 - MPMX20_00238 0.71 -0.0
254,995 + MPMX20_00238 0.83 -2.2
255,003 - MPMX20_00238 0.86 +0.6
255,039 - +0.4
255,070 + +1.3
255,078 - +0.1
255,089 + -1.4
255,141 - -0.7
255,143 + +0.4
255,146 - -0.6
255,160 - -2.0
255,185 + +1.4
255,193 - MPMX20_00239 0.11 +1.0
255,198 - MPMX20_00239 0.11 +0.8
255,210 - MPMX20_00239 0.13 -1.4
255,230 + MPMX20_00239 0.15 -0.4
255,240 + MPMX20_00239 0.16 +0.3
255,243 - MPMX20_00239 0.16 -1.9
255,248 - MPMX20_00239 0.17 +0.9
255,248 - MPMX20_00239 0.17 -0.3
255,248 - MPMX20_00239 0.17 +1.2
255,259 + MPMX20_00239 0.18 -1.8
255,260 - MPMX20_00239 0.18 -0.7
255,285 + MPMX20_00239 0.21 +0.7
255,311 - MPMX20_00239 0.23 +0.4
255,316 - MPMX20_00239 0.24 +0.2
255,345 + MPMX20_00239 0.27 +0.1
255,345 - MPMX20_00239 0.27 +0.5
255,428 + MPMX20_00239 0.36 +1.3
255,467 + MPMX20_00239 0.40 -0.0
255,467 + MPMX20_00239 0.40 -1.8
255,475 - MPMX20_00239 0.41 +0.8
255,475 - MPMX20_00239 0.41 +0.3
255,477 + MPMX20_00239 0.41 -2.8
255,523 + MPMX20_00239 0.46 +0.5
255,526 - MPMX20_00239 0.46 +1.3
255,565 - MPMX20_00239 0.50 -0.5
255,565 - MPMX20_00239 0.50 -0.2
255,572 + MPMX20_00239 0.51 -0.0
255,584 + MPMX20_00239 0.52 -0.7
255,592 - MPMX20_00239 0.53 +0.0
255,607 - MPMX20_00239 0.55 -1.7
255,752 - MPMX20_00239 0.70 -0.0
255,752 - MPMX20_00239 0.70 -0.3
255,752 - MPMX20_00239 0.70 -0.3
255,757 + MPMX20_00239 0.70 -0.3

Or see this region's nucleotide sequence