Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03432 and MPMX20_03433 are separated by 56 nucleotides MPMX20_03433 and MPMX20_03434 overlap by 4 nucleotides MPMX20_03434 and MPMX20_03435 overlap by 1 nucleotides MPMX20_03435 and MPMX20_03436 are separated by 77 nucleotides MPMX20_03436 and MPMX20_03437 are separated by 71 nucleotides
MPMX20_03432: MPMX20_03432 - HTH-type transcriptional regulator MurR, at 3,621,176 to 3,622,024
_03432
MPMX20_03433: MPMX20_03433 - Ferredoxin YfhL, at 3,622,081 to 3,622,341
_03433
MPMX20_03434: MPMX20_03434 - Holo-[acyl-carrier-protein] synthase, at 3,622,338 to 3,622,718
_03434
MPMX20_03435: MPMX20_03435 - Pyridoxine 5'-phosphate synthase, at 3,622,718 to 3,623,449
_03435
MPMX20_03436: MPMX20_03436 - DNA repair protein RecO, at 3,623,527 to 3,624,174
_03436
MPMX20_03437: MPMX20_03437 - GTPase Era, at 3,624,246 to 3,625,151
_03437
Position (kb)
3622
3623
3624 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3621.733 kb on + strand, within MPMX20_03432 at 3621.855 kb on + strand, within MPMX20_03432 at 3621.864 kb on - strand, within MPMX20_03432 at 3621.948 kb on + strand at 3621.948 kb on - strand at 3621.983 kb on - strand at 3621.996 kb on + strand at 3622.004 kb on - strand at 3622.004 kb on - strand at 3622.004 kb on - strand at 3622.018 kb on + strand at 3622.193 kb on + strand, within MPMX20_03433 at 3622.208 kb on + strand, within MPMX20_03433 at 3622.248 kb on + strand, within MPMX20_03433 at 3622.286 kb on - strand, within MPMX20_03433 at 3622.286 kb on - strand, within MPMX20_03433 at 3622.307 kb on + strand, within MPMX20_03433 at 3623.030 kb on - strand, within MPMX20_03435 at 3623.030 kb on - strand, within MPMX20_03435 at 3623.030 kb on - strand, within MPMX20_03435 at 3623.030 kb on - strand, within MPMX20_03435 at 3623.384 kb on - strand at 3623.516 kb on + strand at 3623.574 kb on - strand at 3623.586 kb on + strand at 3623.662 kb on - strand, within MPMX20_03436 at 3623.673 kb on + strand, within MPMX20_03436 at 3623.673 kb on + strand, within MPMX20_03436 at 3623.674 kb on - strand, within MPMX20_03436 at 3623.741 kb on + strand, within MPMX20_03436 at 3623.757 kb on + strand, within MPMX20_03436 at 3623.765 kb on - strand, within MPMX20_03436 at 3623.880 kb on + strand, within MPMX20_03436 at 3623.888 kb on - strand, within MPMX20_03436 at 3623.888 kb on - strand, within MPMX20_03436 at 3623.942 kb on + strand, within MPMX20_03436 at 3623.969 kb on + strand, within MPMX20_03436 at 3623.969 kb on + strand, within MPMX20_03436 at 3623.969 kb on + strand, within MPMX20_03436 at 3623.969 kb on + strand, within MPMX20_03436 at 3623.969 kb on - strand, within MPMX20_03436 at 3623.977 kb on - strand, within MPMX20_03436 at 3623.977 kb on - strand, within MPMX20_03436 at 3624.033 kb on - strand, within MPMX20_03436 at 3624.040 kb on - strand, within MPMX20_03436 at 3624.145 kb on + strand at 3624.171 kb on + strand at 3624.171 kb on + strand at 3624.171 kb on + strand at 3624.171 kb on + strand at 3624.179 kb on - strand at 3624.179 kb on - strand at 3624.197 kb on + strand at 3624.215 kb on - strand at 3624.215 kb on - strand at 3624.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,621,733 + MPMX20_03432 0.66 -1.1 3,621,855 + MPMX20_03432 0.80 -2.8 3,621,864 - MPMX20_03432 0.81 -3.3 3,621,948 + -0.3 3,621,948 - -2.2 3,621,983 - -1.4 3,621,996 + -0.8 3,622,004 - -0.2 3,622,004 - -3.7 3,622,004 - +0.0 3,622,018 + -0.6 3,622,193 + MPMX20_03433 0.43 -3.3 3,622,208 + MPMX20_03433 0.49 +0.7 3,622,248 + MPMX20_03433 0.64 -0.3 3,622,286 - MPMX20_03433 0.79 +0.9 3,622,286 - MPMX20_03433 0.79 +1.5 3,622,307 + MPMX20_03433 0.87 +1.7 3,623,030 - MPMX20_03435 0.43 -0.8 3,623,030 - MPMX20_03435 0.43 -0.3 3,623,030 - MPMX20_03435 0.43 -2.5 3,623,030 - MPMX20_03435 0.43 -2.5 3,623,384 - +2.0 3,623,516 + -3.4 3,623,574 - +0.8 3,623,586 + -3.1 3,623,662 - MPMX20_03436 0.21 -0.5 3,623,673 + MPMX20_03436 0.23 -0.4 3,623,673 + MPMX20_03436 0.23 +2.2 3,623,674 - MPMX20_03436 0.23 -2.8 3,623,741 + MPMX20_03436 0.33 -3.0 3,623,757 + MPMX20_03436 0.35 +0.4 3,623,765 - MPMX20_03436 0.37 -1.4 3,623,880 + MPMX20_03436 0.54 -1.7 3,623,888 - MPMX20_03436 0.56 -1.5 3,623,888 - MPMX20_03436 0.56 -0.6 3,623,942 + MPMX20_03436 0.64 -0.5 3,623,969 + MPMX20_03436 0.68 +1.5 3,623,969 + MPMX20_03436 0.68 -2.5 3,623,969 + MPMX20_03436 0.68 +2.4 3,623,969 + MPMX20_03436 0.68 +2.8 3,623,969 - MPMX20_03436 0.68 -3.6 3,623,977 - MPMX20_03436 0.69 +0.8 3,623,977 - MPMX20_03436 0.69 -1.1 3,624,033 - MPMX20_03436 0.78 -1.4 3,624,040 - MPMX20_03436 0.79 -2.2 3,624,145 + -1.1 3,624,171 + +0.5 3,624,171 + +0.9 3,624,171 + +2.3 3,624,171 + +0.7 3,624,179 - +2.0 3,624,179 - -1.0 3,624,197 + +0.5 3,624,215 - -1.0 3,624,215 - -1.8 3,624,271 - -0.5
Or see this region's nucleotide sequence