Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03388

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03387 and MPMX20_03388 are separated by 65 nucleotidesMPMX20_03388 and MPMX20_03389 are separated by 300 nucleotides MPMX20_03387: MPMX20_03387 - hypothetical protein, at 3,565,936 to 3,566,970 _03387 MPMX20_03388: MPMX20_03388 - Di-/tripeptide transporter, at 3,567,036 to 3,568,577 _03388 MPMX20_03389: MPMX20_03389 - GTPase Der, at 3,568,878 to 3,570,350 _03389 Position (kb) 3567 3568 3569Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3566.038 kb on - strandat 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.064 kb on + strand, within MPMX20_03387at 3566.066 kb on + strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.072 kb on - strand, within MPMX20_03387at 3566.102 kb on - strand, within MPMX20_03387at 3566.287 kb on + strand, within MPMX20_03387at 3566.436 kb on - strand, within MPMX20_03387at 3566.465 kb on - strand, within MPMX20_03387at 3566.488 kb on + strand, within MPMX20_03387at 3566.579 kb on + strand, within MPMX20_03387at 3566.734 kb on + strand, within MPMX20_03387at 3566.737 kb on - strand, within MPMX20_03387at 3566.754 kb on + strand, within MPMX20_03387at 3566.800 kb on - strand, within MPMX20_03387at 3566.843 kb on + strand, within MPMX20_03387at 3566.930 kb on + strandat 3567.052 kb on + strandat 3567.178 kb on + strandat 3567.178 kb on + strandat 3567.186 kb on - strandat 3567.203 kb on - strand, within MPMX20_03388at 3567.211 kb on + strand, within MPMX20_03388at 3567.229 kb on + strand, within MPMX20_03388at 3567.252 kb on - strand, within MPMX20_03388at 3567.387 kb on - strand, within MPMX20_03388at 3567.566 kb on - strand, within MPMX20_03388at 3567.567 kb on - strand, within MPMX20_03388at 3567.601 kb on + strand, within MPMX20_03388at 3567.609 kb on - strand, within MPMX20_03388at 3567.652 kb on + strand, within MPMX20_03388at 3567.688 kb on - strand, within MPMX20_03388at 3567.690 kb on + strand, within MPMX20_03388at 3567.698 kb on - strand, within MPMX20_03388at 3567.792 kb on + strand, within MPMX20_03388at 3567.844 kb on - strand, within MPMX20_03388at 3567.856 kb on + strand, within MPMX20_03388at 3567.912 kb on + strand, within MPMX20_03388at 3567.984 kb on + strand, within MPMX20_03388at 3567.996 kb on - strand, within MPMX20_03388at 3568.025 kb on + strand, within MPMX20_03388at 3568.050 kb on - strand, within MPMX20_03388at 3568.177 kb on - strand, within MPMX20_03388at 3568.185 kb on - strand, within MPMX20_03388at 3568.185 kb on - strand, within MPMX20_03388at 3568.185 kb on - strand, within MPMX20_03388at 3568.185 kb on - strand, within MPMX20_03388at 3568.185 kb on - strand, within MPMX20_03388at 3568.187 kb on + strand, within MPMX20_03388at 3568.195 kb on - strand, within MPMX20_03388at 3568.195 kb on - strand, within MPMX20_03388at 3568.283 kb on + strand, within MPMX20_03388at 3568.291 kb on - strand, within MPMX20_03388at 3568.301 kb on - strand, within MPMX20_03388at 3568.366 kb on - strand, within MPMX20_03388at 3568.433 kb on - strandat 3568.509 kb on - strandat 3568.592 kb on + strandat 3568.600 kb on - strandat 3568.600 kb on - strandat 3568.605 kb on - strandat 3568.719 kb on - strandat 3568.726 kb on - strandat 3568.763 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
3,566,038 - +1.3
3,566,064 + MPMX20_03387 0.12 +1.4
3,566,064 + MPMX20_03387 0.12 -1.9
3,566,064 + MPMX20_03387 0.12 +1.9
3,566,066 + MPMX20_03387 0.13 +1.1
3,566,072 - MPMX20_03387 0.13 -2.1
3,566,072 - MPMX20_03387 0.13 +2.2
3,566,072 - MPMX20_03387 0.13 +2.9
3,566,102 - MPMX20_03387 0.16 -1.3
3,566,287 + MPMX20_03387 0.34 +0.9
3,566,436 - MPMX20_03387 0.48 +1.4
3,566,465 - MPMX20_03387 0.51 -0.6
3,566,488 + MPMX20_03387 0.53 -0.4
3,566,579 + MPMX20_03387 0.62 -2.0
3,566,734 + MPMX20_03387 0.77 -1.2
3,566,737 - MPMX20_03387 0.77 -0.9
3,566,754 + MPMX20_03387 0.79 +0.5
3,566,800 - MPMX20_03387 0.83 +0.8
3,566,843 + MPMX20_03387 0.88 +0.9
3,566,930 + -3.3
3,567,052 + -2.1
3,567,178 + +2.0
3,567,178 + +0.4
3,567,186 - +0.7
3,567,203 - MPMX20_03388 0.11 -3.7
3,567,211 + MPMX20_03388 0.11 +1.8
3,567,229 + MPMX20_03388 0.13 -1.5
3,567,252 - MPMX20_03388 0.14 +1.2
3,567,387 - MPMX20_03388 0.23 -0.3
3,567,566 - MPMX20_03388 0.34 -2.5
3,567,567 - MPMX20_03388 0.34 +1.2
3,567,601 + MPMX20_03388 0.37 -0.5
3,567,609 - MPMX20_03388 0.37 +2.2
3,567,652 + MPMX20_03388 0.40 -3.8
3,567,688 - MPMX20_03388 0.42 +0.4
3,567,690 + MPMX20_03388 0.42 -1.2
3,567,698 - MPMX20_03388 0.43 -0.4
3,567,792 + MPMX20_03388 0.49 +1.0
3,567,844 - MPMX20_03388 0.52 +2.5
3,567,856 + MPMX20_03388 0.53 +1.0
3,567,912 + MPMX20_03388 0.57 +1.9
3,567,984 + MPMX20_03388 0.61 +1.6
3,567,996 - MPMX20_03388 0.62 +0.7
3,568,025 + MPMX20_03388 0.64 -0.9
3,568,050 - MPMX20_03388 0.66 +0.7
3,568,177 - MPMX20_03388 0.74 +0.8
3,568,185 - MPMX20_03388 0.75 -0.4
3,568,185 - MPMX20_03388 0.75 +2.0
3,568,185 - MPMX20_03388 0.75 -3.3
3,568,185 - MPMX20_03388 0.75 +1.7
3,568,185 - MPMX20_03388 0.75 +2.4
3,568,187 + MPMX20_03388 0.75 +1.1
3,568,195 - MPMX20_03388 0.75 +0.9
3,568,195 - MPMX20_03388 0.75 -0.1
3,568,283 + MPMX20_03388 0.81 -2.2
3,568,291 - MPMX20_03388 0.81 +1.8
3,568,301 - MPMX20_03388 0.82 +2.7
3,568,366 - MPMX20_03388 0.86 -2.9
3,568,433 - -1.3
3,568,509 - +0.5
3,568,592 + +0.4
3,568,600 - +0.0
3,568,600 - -1.5
3,568,605 - +0.9
3,568,719 - +1.2
3,568,726 - -0.4
3,568,763 + -1.2

Or see this region's nucleotide sequence