Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03377

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03376 and MPMX20_03377 are separated by 156 nucleotidesMPMX20_03377 and MPMX20_03378 are separated by 54 nucleotidesMPMX20_03378 and MPMX20_03379 are separated by 152 nucleotides MPMX20_03376: MPMX20_03376 - HTH-type transcriptional regulator MurR, at 3,555,496 to 3,556,326 _03376 MPMX20_03377: MPMX20_03377 - hypothetical protein, at 3,556,483 to 3,556,680 _03377 MPMX20_03378: MPMX20_03378 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,556,735 to 3,557,523 _03378 MPMX20_03379: MPMX20_03379 - Putative NADP-dependent oxidoreductase YfmJ, at 3,557,676 to 3,558,707 _03379 Position (kb) 3556 3557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3555.520 kb on - strandat 3555.520 kb on - strandat 3555.556 kb on - strandat 3555.589 kb on + strand, within MPMX20_03376at 3555.589 kb on + strand, within MPMX20_03376at 3555.858 kb on - strand, within MPMX20_03376at 3555.898 kb on - strand, within MPMX20_03376at 3555.946 kb on + strand, within MPMX20_03376at 3555.967 kb on - strand, within MPMX20_03376at 3555.990 kb on - strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.018 kb on - strand, within MPMX20_03376at 3556.069 kb on + strand, within MPMX20_03376at 3556.106 kb on + strand, within MPMX20_03376at 3556.168 kb on - strand, within MPMX20_03376at 3556.272 kb on - strandat 3556.359 kb on + strandat 3556.503 kb on + strand, within MPMX20_03377at 3556.619 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.653 kb on + strand, within MPMX20_03377at 3556.691 kb on + strandat 3556.710 kb on + strandat 3556.778 kb on + strandat 3556.823 kb on - strand, within MPMX20_03378at 3556.868 kb on + strand, within MPMX20_03378at 3556.910 kb on - strand, within MPMX20_03378at 3556.924 kb on - strand, within MPMX20_03378at 3556.932 kb on - strand, within MPMX20_03378at 3556.941 kb on + strand, within MPMX20_03378at 3556.949 kb on - strand, within MPMX20_03378at 3556.985 kb on - strand, within MPMX20_03378at 3557.071 kb on + strand, within MPMX20_03378at 3557.127 kb on + strand, within MPMX20_03378at 3557.154 kb on + strand, within MPMX20_03378at 3557.277 kb on + strand, within MPMX20_03378at 3557.285 kb on - strand, within MPMX20_03378at 3557.444 kb on - strand, within MPMX20_03378at 3557.453 kb on - strandat 3557.489 kb on + strandat 3557.536 kb on - strandat 3557.565 kb on + strandat 3557.651 kb on + strandat 3557.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,555,520 - -1.1
3,555,520 - -3.7
3,555,556 - +1.1
3,555,589 + MPMX20_03376 0.11 -3.4
3,555,589 + MPMX20_03376 0.11 +2.4
3,555,858 - MPMX20_03376 0.44 +2.2
3,555,898 - MPMX20_03376 0.48 -2.2
3,555,946 + MPMX20_03376 0.54 +1.3
3,555,967 - MPMX20_03376 0.57 +1.9
3,555,990 - MPMX20_03376 0.59 +1.6
3,556,010 + MPMX20_03376 0.62 +0.7
3,556,010 + MPMX20_03376 0.62 -2.7
3,556,018 - MPMX20_03376 0.63 -0.5
3,556,069 + MPMX20_03376 0.69 -2.8
3,556,106 + MPMX20_03376 0.73 +0.3
3,556,168 - MPMX20_03376 0.81 -2.5
3,556,272 - -3.4
3,556,359 + +0.4
3,556,503 + MPMX20_03377 0.10 +1.6
3,556,619 + MPMX20_03377 0.69 -3.5
3,556,634 + MPMX20_03377 0.76 -3.8
3,556,634 + MPMX20_03377 0.76 -2.0
3,556,634 + MPMX20_03377 0.76 -1.7
3,556,653 + MPMX20_03377 0.86 -0.5
3,556,691 + +0.3
3,556,710 + +0.2
3,556,778 + -4.4
3,556,823 - MPMX20_03378 0.11 -0.1
3,556,868 + MPMX20_03378 0.17 -3.8
3,556,910 - MPMX20_03378 0.22 -0.1
3,556,924 - MPMX20_03378 0.24 +3.5
3,556,932 - MPMX20_03378 0.25 +0.0
3,556,941 + MPMX20_03378 0.26 -3.1
3,556,949 - MPMX20_03378 0.27 -1.2
3,556,985 - MPMX20_03378 0.32 -1.5
3,557,071 + MPMX20_03378 0.43 -0.7
3,557,127 + MPMX20_03378 0.50 -3.7
3,557,154 + MPMX20_03378 0.53 -2.2
3,557,277 + MPMX20_03378 0.69 +0.4
3,557,285 - MPMX20_03378 0.70 +0.8
3,557,444 - MPMX20_03378 0.90 +1.2
3,557,453 - -3.6
3,557,489 + -0.4
3,557,536 - +1.5
3,557,565 + +2.3
3,557,651 + -3.4
3,557,657 - +1.0

Or see this region's nucleotide sequence