Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03376 and MPMX20_03377 are separated by 156 nucleotides MPMX20_03377 and MPMX20_03378 are separated by 54 nucleotides MPMX20_03378 and MPMX20_03379 are separated by 152 nucleotides
MPMX20_03376: MPMX20_03376 - HTH-type transcriptional regulator MurR, at 3,555,496 to 3,556,326
_03376
MPMX20_03377: MPMX20_03377 - hypothetical protein, at 3,556,483 to 3,556,680
_03377
MPMX20_03378: MPMX20_03378 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,556,735 to 3,557,523
_03378
MPMX20_03379: MPMX20_03379 - Putative NADP-dependent oxidoreductase YfmJ, at 3,557,676 to 3,558,707
_03379
Position (kb)
3556
3557 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3555.520 kb on - strand at 3555.520 kb on - strand at 3555.556 kb on - strand at 3555.589 kb on + strand, within MPMX20_03376 at 3555.589 kb on + strand, within MPMX20_03376 at 3555.858 kb on - strand, within MPMX20_03376 at 3555.898 kb on - strand, within MPMX20_03376 at 3555.946 kb on + strand, within MPMX20_03376 at 3555.967 kb on - strand, within MPMX20_03376 at 3555.990 kb on - strand, within MPMX20_03376 at 3556.010 kb on + strand, within MPMX20_03376 at 3556.010 kb on + strand, within MPMX20_03376 at 3556.018 kb on - strand, within MPMX20_03376 at 3556.069 kb on + strand, within MPMX20_03376 at 3556.106 kb on + strand, within MPMX20_03376 at 3556.168 kb on - strand, within MPMX20_03376 at 3556.272 kb on - strand at 3556.359 kb on + strand at 3556.503 kb on + strand, within MPMX20_03377 at 3556.619 kb on + strand, within MPMX20_03377 at 3556.634 kb on + strand, within MPMX20_03377 at 3556.634 kb on + strand, within MPMX20_03377 at 3556.634 kb on + strand, within MPMX20_03377 at 3556.653 kb on + strand, within MPMX20_03377 at 3556.691 kb on + strand at 3556.710 kb on + strand at 3556.778 kb on + strand at 3556.823 kb on - strand, within MPMX20_03378 at 3556.868 kb on + strand, within MPMX20_03378 at 3556.910 kb on - strand, within MPMX20_03378 at 3556.924 kb on - strand, within MPMX20_03378 at 3556.932 kb on - strand, within MPMX20_03378 at 3556.941 kb on + strand, within MPMX20_03378 at 3556.949 kb on - strand, within MPMX20_03378 at 3556.985 kb on - strand, within MPMX20_03378 at 3557.071 kb on + strand, within MPMX20_03378 at 3557.127 kb on + strand, within MPMX20_03378 at 3557.154 kb on + strand, within MPMX20_03378 at 3557.277 kb on + strand, within MPMX20_03378 at 3557.285 kb on - strand, within MPMX20_03378 at 3557.444 kb on - strand, within MPMX20_03378 at 3557.453 kb on - strand at 3557.489 kb on + strand at 3557.536 kb on - strand at 3557.565 kb on + strand at 3557.651 kb on + strand at 3557.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,555,520 - -1.1 3,555,520 - -3.7 3,555,556 - +1.1 3,555,589 + MPMX20_03376 0.11 -3.4 3,555,589 + MPMX20_03376 0.11 +2.4 3,555,858 - MPMX20_03376 0.44 +2.2 3,555,898 - MPMX20_03376 0.48 -2.2 3,555,946 + MPMX20_03376 0.54 +1.3 3,555,967 - MPMX20_03376 0.57 +1.9 3,555,990 - MPMX20_03376 0.59 +1.6 3,556,010 + MPMX20_03376 0.62 +0.7 3,556,010 + MPMX20_03376 0.62 -2.7 3,556,018 - MPMX20_03376 0.63 -0.5 3,556,069 + MPMX20_03376 0.69 -2.8 3,556,106 + MPMX20_03376 0.73 +0.3 3,556,168 - MPMX20_03376 0.81 -2.5 3,556,272 - -3.4 3,556,359 + +0.4 3,556,503 + MPMX20_03377 0.10 +1.6 3,556,619 + MPMX20_03377 0.69 -3.5 3,556,634 + MPMX20_03377 0.76 -3.8 3,556,634 + MPMX20_03377 0.76 -2.0 3,556,634 + MPMX20_03377 0.76 -1.7 3,556,653 + MPMX20_03377 0.86 -0.5 3,556,691 + +0.3 3,556,710 + +0.2 3,556,778 + -4.4 3,556,823 - MPMX20_03378 0.11 -0.1 3,556,868 + MPMX20_03378 0.17 -3.8 3,556,910 - MPMX20_03378 0.22 -0.1 3,556,924 - MPMX20_03378 0.24 +3.5 3,556,932 - MPMX20_03378 0.25 +0.0 3,556,941 + MPMX20_03378 0.26 -3.1 3,556,949 - MPMX20_03378 0.27 -1.2 3,556,985 - MPMX20_03378 0.32 -1.5 3,557,071 + MPMX20_03378 0.43 -0.7 3,557,127 + MPMX20_03378 0.50 -3.7 3,557,154 + MPMX20_03378 0.53 -2.2 3,557,277 + MPMX20_03378 0.69 +0.4 3,557,285 - MPMX20_03378 0.70 +0.8 3,557,444 - MPMX20_03378 0.90 +1.2 3,557,453 - -3.6 3,557,489 + -0.4 3,557,536 - +1.5 3,557,565 + +2.3 3,557,651 + -3.4 3,557,657 - +1.0
Or see this region's nucleotide sequence