Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03089 and MPMX20_03090 are separated by 137 nucleotides MPMX20_03090 and MPMX20_03091 are separated by 64 nucleotides MPMX20_03091 and MPMX20_03092 are separated by 51 nucleotides
MPMX20_03089: MPMX20_03089 - Iron-sulfur cluster carrier protein, at 3,241,020 to 3,242,129
_03089
MPMX20_03090: MPMX20_03090 - Methionine--tRNA ligase, at 3,242,267 to 3,244,300
_03090
MPMX20_03091: MPMX20_03091 - hypothetical protein, at 3,244,365 to 3,244,835
_03091
MPMX20_03092: MPMX20_03092 - Transcriptional regulatory protein BtsR, at 3,244,887 to 3,245,606
_03092
Position (kb)
3242
3243
3244
3245 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3241.306 kb on + strand, within MPMX20_03089 at 3241.314 kb on - strand, within MPMX20_03089 at 3241.377 kb on + strand, within MPMX20_03089 at 3241.387 kb on - strand, within MPMX20_03089 at 3241.442 kb on + strand, within MPMX20_03089 at 3241.443 kb on - strand, within MPMX20_03089 at 3241.474 kb on + strand, within MPMX20_03089 at 3241.477 kb on - strand, within MPMX20_03089 at 3241.517 kb on - strand, within MPMX20_03089 at 3241.543 kb on + strand, within MPMX20_03089 at 3241.551 kb on - strand, within MPMX20_03089 at 3241.679 kb on - strand, within MPMX20_03089 at 3241.755 kb on - strand, within MPMX20_03089 at 3241.775 kb on + strand, within MPMX20_03089 at 3241.782 kb on - strand, within MPMX20_03089 at 3241.788 kb on - strand, within MPMX20_03089 at 3241.788 kb on - strand, within MPMX20_03089 at 3241.806 kb on - strand, within MPMX20_03089 at 3241.816 kb on + strand, within MPMX20_03089 at 3241.816 kb on + strand, within MPMX20_03089 at 3241.826 kb on - strand, within MPMX20_03089 at 3241.833 kb on - strand, within MPMX20_03089 at 3241.843 kb on + strand, within MPMX20_03089 at 3241.851 kb on - strand, within MPMX20_03089 at 3241.851 kb on - strand, within MPMX20_03089 at 3241.852 kb on - strand, within MPMX20_03089 at 3241.897 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.923 kb on - strand, within MPMX20_03089 at 3241.985 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.018 kb on - strand, within MPMX20_03089 at 3242.037 kb on + strand at 3242.037 kb on - strand at 3242.040 kb on - strand at 3242.045 kb on + strand at 3242.067 kb on - strand at 3242.077 kb on - strand at 3242.096 kb on - strand at 3242.125 kb on - strand at 3242.145 kb on - strand at 3242.158 kb on - strand at 3242.166 kb on - strand at 3242.190 kb on + strand at 3243.932 kb on + strand, within MPMX20_03090 at 3244.088 kb on + strand, within MPMX20_03090 at 3244.260 kb on + strand at 3244.338 kb on + strand at 3244.353 kb on + strand at 3244.358 kb on + strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.391 kb on + strand at 3244.472 kb on - strand, within MPMX20_03091 at 3244.508 kb on - strand, within MPMX20_03091 at 3244.559 kb on + strand, within MPMX20_03091 at 3244.578 kb on - strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.681 kb on - strand, within MPMX20_03091 at 3244.730 kb on + strand, within MPMX20_03091 at 3244.737 kb on + strand, within MPMX20_03091 at 3244.798 kb on + strand at 3244.798 kb on + strand at 3244.806 kb on - strand at 3244.806 kb on - strand at 3245.048 kb on + strand, within MPMX20_03092 at 3245.102 kb on - strand, within MPMX20_03092 at 3245.107 kb on - strand, within MPMX20_03092 at 3245.167 kb on + strand, within MPMX20_03092 at 3245.188 kb on + strand, within MPMX20_03092 at 3245.191 kb on - strand, within MPMX20_03092 at 3245.195 kb on + strand, within MPMX20_03092 at 3245.196 kb on - strand, within MPMX20_03092 at 3245.246 kb on - strand, within MPMX20_03092 at 3245.287 kb on - strand, within MPMX20_03092
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,241,306 + MPMX20_03089 0.26 -3.1 3,241,314 - MPMX20_03089 0.26 +1.0 3,241,377 + MPMX20_03089 0.32 +0.8 3,241,387 - MPMX20_03089 0.33 +1.1 3,241,442 + MPMX20_03089 0.38 -2.1 3,241,443 - MPMX20_03089 0.38 +1.1 3,241,474 + MPMX20_03089 0.41 -1.1 3,241,477 - MPMX20_03089 0.41 -0.4 3,241,517 - MPMX20_03089 0.45 -1.5 3,241,543 + MPMX20_03089 0.47 -0.1 3,241,551 - MPMX20_03089 0.48 +0.8 3,241,679 - MPMX20_03089 0.59 +1.3 3,241,755 - MPMX20_03089 0.66 +1.4 3,241,775 + MPMX20_03089 0.68 +1.5 3,241,782 - MPMX20_03089 0.69 -0.3 3,241,788 - MPMX20_03089 0.69 +0.3 3,241,788 - MPMX20_03089 0.69 -2.3 3,241,806 - MPMX20_03089 0.71 -0.8 3,241,816 + MPMX20_03089 0.72 -0.4 3,241,816 + MPMX20_03089 0.72 +1.6 3,241,826 - MPMX20_03089 0.73 -1.6 3,241,833 - MPMX20_03089 0.73 +0.7 3,241,843 + MPMX20_03089 0.74 +0.7 3,241,851 - MPMX20_03089 0.75 +1.6 3,241,851 - MPMX20_03089 0.75 -2.6 3,241,852 - MPMX20_03089 0.75 -3.3 3,241,897 + MPMX20_03089 0.79 +0.3 3,241,910 + MPMX20_03089 0.80 +1.4 3,241,910 + MPMX20_03089 0.80 +1.5 3,241,910 + MPMX20_03089 0.80 +0.7 3,241,910 + MPMX20_03089 0.80 +1.0 3,241,923 - MPMX20_03089 0.81 +0.6 3,241,985 + MPMX20_03089 0.87 +0.7 3,242,010 + MPMX20_03089 0.89 -0.0 3,242,010 + MPMX20_03089 0.89 -3.1 3,242,010 + MPMX20_03089 0.89 -2.1 3,242,018 - MPMX20_03089 0.90 -3.8 3,242,037 + +1.0 3,242,037 - -1.2 3,242,040 - -3.6 3,242,045 + +1.3 3,242,067 - +0.0 3,242,077 - -0.8 3,242,096 - +1.4 3,242,125 - -2.9 3,242,145 - +0.6 3,242,158 - +1.3 3,242,166 - -3.1 3,242,190 + -3.4 3,243,932 + MPMX20_03090 0.82 -2.3 3,244,088 + MPMX20_03090 0.90 -3.1 3,244,260 + -1.6 3,244,338 + +1.4 3,244,353 + -0.9 3,244,358 + +2.0 3,244,361 - -1.0 3,244,361 - +1.5 3,244,361 - +2.1 3,244,361 - -2.6 3,244,391 + +2.3 3,244,472 - MPMX20_03091 0.23 -0.5 3,244,508 - MPMX20_03091 0.30 -3.1 3,244,559 + MPMX20_03091 0.41 +1.1 3,244,578 - MPMX20_03091 0.45 -3.3 3,244,667 + MPMX20_03091 0.64 +0.1 3,244,667 + MPMX20_03091 0.64 -4.5 3,244,681 - MPMX20_03091 0.67 +0.8 3,244,730 + MPMX20_03091 0.77 -0.8 3,244,737 + MPMX20_03091 0.79 -2.6 3,244,798 + -2.8 3,244,798 + +1.7 3,244,806 - +0.2 3,244,806 - +0.5 3,245,048 + MPMX20_03092 0.22 -1.6 3,245,102 - MPMX20_03092 0.30 -1.5 3,245,107 - MPMX20_03092 0.31 +1.5 3,245,167 + MPMX20_03092 0.39 +0.7 3,245,188 + MPMX20_03092 0.42 +3.2 3,245,191 - MPMX20_03092 0.42 -0.7 3,245,195 + MPMX20_03092 0.43 -1.4 3,245,196 - MPMX20_03092 0.43 -2.9 3,245,246 - MPMX20_03092 0.50 +1.7 3,245,287 - MPMX20_03092 0.56 -3.3
Or see this region's nucleotide sequence