Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03090

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03089 and MPMX20_03090 are separated by 137 nucleotidesMPMX20_03090 and MPMX20_03091 are separated by 64 nucleotidesMPMX20_03091 and MPMX20_03092 are separated by 51 nucleotides MPMX20_03089: MPMX20_03089 - Iron-sulfur cluster carrier protein, at 3,241,020 to 3,242,129 _03089 MPMX20_03090: MPMX20_03090 - Methionine--tRNA ligase, at 3,242,267 to 3,244,300 _03090 MPMX20_03091: MPMX20_03091 - hypothetical protein, at 3,244,365 to 3,244,835 _03091 MPMX20_03092: MPMX20_03092 - Transcriptional regulatory protein BtsR, at 3,244,887 to 3,245,606 _03092 Position (kb) 3242 3243 3244 3245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3241.306 kb on + strand, within MPMX20_03089at 3241.314 kb on - strand, within MPMX20_03089at 3241.377 kb on + strand, within MPMX20_03089at 3241.387 kb on - strand, within MPMX20_03089at 3241.442 kb on + strand, within MPMX20_03089at 3241.443 kb on - strand, within MPMX20_03089at 3241.474 kb on + strand, within MPMX20_03089at 3241.477 kb on - strand, within MPMX20_03089at 3241.517 kb on - strand, within MPMX20_03089at 3241.543 kb on + strand, within MPMX20_03089at 3241.551 kb on - strand, within MPMX20_03089at 3241.679 kb on - strand, within MPMX20_03089at 3241.755 kb on - strand, within MPMX20_03089at 3241.775 kb on + strand, within MPMX20_03089at 3241.782 kb on - strand, within MPMX20_03089at 3241.788 kb on - strand, within MPMX20_03089at 3241.788 kb on - strand, within MPMX20_03089at 3241.806 kb on - strand, within MPMX20_03089at 3241.816 kb on + strand, within MPMX20_03089at 3241.816 kb on + strand, within MPMX20_03089at 3241.826 kb on - strand, within MPMX20_03089at 3241.833 kb on - strand, within MPMX20_03089at 3241.843 kb on + strand, within MPMX20_03089at 3241.851 kb on - strand, within MPMX20_03089at 3241.851 kb on - strand, within MPMX20_03089at 3241.852 kb on - strand, within MPMX20_03089at 3241.897 kb on + strand, within MPMX20_03089at 3241.910 kb on + strand, within MPMX20_03089at 3241.910 kb on + strand, within MPMX20_03089at 3241.910 kb on + strand, within MPMX20_03089at 3241.910 kb on + strand, within MPMX20_03089at 3241.923 kb on - strand, within MPMX20_03089at 3241.985 kb on + strand, within MPMX20_03089at 3242.010 kb on + strand, within MPMX20_03089at 3242.010 kb on + strand, within MPMX20_03089at 3242.010 kb on + strand, within MPMX20_03089at 3242.018 kb on - strand, within MPMX20_03089at 3242.037 kb on + strandat 3242.037 kb on - strandat 3242.040 kb on - strandat 3242.045 kb on + strandat 3242.067 kb on - strandat 3242.077 kb on - strandat 3242.096 kb on - strandat 3242.125 kb on - strandat 3242.145 kb on - strandat 3242.158 kb on - strandat 3242.166 kb on - strandat 3242.190 kb on + strandat 3243.932 kb on + strand, within MPMX20_03090at 3244.088 kb on + strand, within MPMX20_03090at 3244.260 kb on + strandat 3244.338 kb on + strandat 3244.353 kb on + strandat 3244.358 kb on + strandat 3244.361 kb on - strandat 3244.361 kb on - strandat 3244.361 kb on - strandat 3244.361 kb on - strandat 3244.391 kb on + strandat 3244.472 kb on - strand, within MPMX20_03091at 3244.508 kb on - strand, within MPMX20_03091at 3244.559 kb on + strand, within MPMX20_03091at 3244.578 kb on - strand, within MPMX20_03091at 3244.667 kb on + strand, within MPMX20_03091at 3244.667 kb on + strand, within MPMX20_03091at 3244.681 kb on - strand, within MPMX20_03091at 3244.730 kb on + strand, within MPMX20_03091at 3244.737 kb on + strand, within MPMX20_03091at 3244.798 kb on + strandat 3244.798 kb on + strandat 3244.806 kb on - strandat 3244.806 kb on - strandat 3245.048 kb on + strand, within MPMX20_03092at 3245.102 kb on - strand, within MPMX20_03092at 3245.107 kb on - strand, within MPMX20_03092at 3245.167 kb on + strand, within MPMX20_03092at 3245.188 kb on + strand, within MPMX20_03092at 3245.191 kb on - strand, within MPMX20_03092at 3245.195 kb on + strand, within MPMX20_03092at 3245.196 kb on - strand, within MPMX20_03092at 3245.246 kb on - strand, within MPMX20_03092at 3245.287 kb on - strand, within MPMX20_03092

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,241,306 + MPMX20_03089 0.26 -3.1
3,241,314 - MPMX20_03089 0.26 +1.0
3,241,377 + MPMX20_03089 0.32 +0.8
3,241,387 - MPMX20_03089 0.33 +1.1
3,241,442 + MPMX20_03089 0.38 -2.1
3,241,443 - MPMX20_03089 0.38 +1.1
3,241,474 + MPMX20_03089 0.41 -1.1
3,241,477 - MPMX20_03089 0.41 -0.4
3,241,517 - MPMX20_03089 0.45 -1.5
3,241,543 + MPMX20_03089 0.47 -0.1
3,241,551 - MPMX20_03089 0.48 +0.8
3,241,679 - MPMX20_03089 0.59 +1.3
3,241,755 - MPMX20_03089 0.66 +1.4
3,241,775 + MPMX20_03089 0.68 +1.5
3,241,782 - MPMX20_03089 0.69 -0.3
3,241,788 - MPMX20_03089 0.69 +0.3
3,241,788 - MPMX20_03089 0.69 -2.3
3,241,806 - MPMX20_03089 0.71 -0.8
3,241,816 + MPMX20_03089 0.72 -0.4
3,241,816 + MPMX20_03089 0.72 +1.6
3,241,826 - MPMX20_03089 0.73 -1.6
3,241,833 - MPMX20_03089 0.73 +0.7
3,241,843 + MPMX20_03089 0.74 +0.7
3,241,851 - MPMX20_03089 0.75 +1.6
3,241,851 - MPMX20_03089 0.75 -2.6
3,241,852 - MPMX20_03089 0.75 -3.3
3,241,897 + MPMX20_03089 0.79 +0.3
3,241,910 + MPMX20_03089 0.80 +1.4
3,241,910 + MPMX20_03089 0.80 +1.5
3,241,910 + MPMX20_03089 0.80 +0.7
3,241,910 + MPMX20_03089 0.80 +1.0
3,241,923 - MPMX20_03089 0.81 +0.6
3,241,985 + MPMX20_03089 0.87 +0.7
3,242,010 + MPMX20_03089 0.89 -0.0
3,242,010 + MPMX20_03089 0.89 -3.1
3,242,010 + MPMX20_03089 0.89 -2.1
3,242,018 - MPMX20_03089 0.90 -3.8
3,242,037 + +1.0
3,242,037 - -1.2
3,242,040 - -3.6
3,242,045 + +1.3
3,242,067 - +0.0
3,242,077 - -0.8
3,242,096 - +1.4
3,242,125 - -2.9
3,242,145 - +0.6
3,242,158 - +1.3
3,242,166 - -3.1
3,242,190 + -3.4
3,243,932 + MPMX20_03090 0.82 -2.3
3,244,088 + MPMX20_03090 0.90 -3.1
3,244,260 + -1.6
3,244,338 + +1.4
3,244,353 + -0.9
3,244,358 + +2.0
3,244,361 - -1.0
3,244,361 - +1.5
3,244,361 - +2.1
3,244,361 - -2.6
3,244,391 + +2.3
3,244,472 - MPMX20_03091 0.23 -0.5
3,244,508 - MPMX20_03091 0.30 -3.1
3,244,559 + MPMX20_03091 0.41 +1.1
3,244,578 - MPMX20_03091 0.45 -3.3
3,244,667 + MPMX20_03091 0.64 +0.1
3,244,667 + MPMX20_03091 0.64 -4.5
3,244,681 - MPMX20_03091 0.67 +0.8
3,244,730 + MPMX20_03091 0.77 -0.8
3,244,737 + MPMX20_03091 0.79 -2.6
3,244,798 + -2.8
3,244,798 + +1.7
3,244,806 - +0.2
3,244,806 - +0.5
3,245,048 + MPMX20_03092 0.22 -1.6
3,245,102 - MPMX20_03092 0.30 -1.5
3,245,107 - MPMX20_03092 0.31 +1.5
3,245,167 + MPMX20_03092 0.39 +0.7
3,245,188 + MPMX20_03092 0.42 +3.2
3,245,191 - MPMX20_03092 0.42 -0.7
3,245,195 + MPMX20_03092 0.43 -1.4
3,245,196 - MPMX20_03092 0.43 -2.9
3,245,246 - MPMX20_03092 0.50 +1.7
3,245,287 - MPMX20_03092 0.56 -3.3

Or see this region's nucleotide sequence