Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02730 and MPMX20_02731 are separated by 23 nucleotides MPMX20_02731 and MPMX20_02732 are separated by 74 nucleotides MPMX20_02732 and MPMX20_02733 are separated by 159 nucleotides MPMX20_02733 and MPMX20_02734 are separated by 64 nucleotides
MPMX20_02730: MPMX20_02730 - hypothetical protein, at 2,885,137 to 2,886,126
_02730
MPMX20_02731: MPMX20_02731 - hypothetical protein, at 2,886,150 to 2,886,440
_02731
MPMX20_02732: MPMX20_02732 - PhoP/PhoQ regulator MgrB, at 2,886,515 to 2,886,658
_02732
MPMX20_02733: MPMX20_02733 - hypothetical protein, at 2,886,818 to 2,887,057
_02733
MPMX20_02734: MPMX20_02734 - Transcriptional regulator KdgR, at 2,887,122 to 2,887,913
_02734
Position (kb)
2886
2887 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2885.515 kb on + strand, within MPMX20_02730 at 2885.523 kb on - strand, within MPMX20_02730 at 2885.523 kb on - strand, within MPMX20_02730 at 2885.534 kb on + strand, within MPMX20_02730 at 2885.534 kb on + strand, within MPMX20_02730 at 2885.534 kb on + strand, within MPMX20_02730 at 2885.542 kb on - strand, within MPMX20_02730 at 2885.542 kb on - strand, within MPMX20_02730 at 2885.542 kb on - strand, within MPMX20_02730 at 2885.542 kb on - strand, within MPMX20_02730 at 2885.555 kb on - strand, within MPMX20_02730 at 2885.562 kb on + strand, within MPMX20_02730 at 2885.562 kb on + strand, within MPMX20_02730 at 2885.562 kb on + strand, within MPMX20_02730 at 2885.570 kb on - strand, within MPMX20_02730 at 2885.570 kb on - strand, within MPMX20_02730 at 2885.579 kb on - strand, within MPMX20_02730 at 2885.636 kb on - strand, within MPMX20_02730 at 2885.659 kb on + strand, within MPMX20_02730 at 2885.766 kb on + strand, within MPMX20_02730 at 2885.820 kb on - strand, within MPMX20_02730 at 2885.861 kb on - strand, within MPMX20_02730 at 2885.861 kb on - strand, within MPMX20_02730 at 2885.864 kb on - strand, within MPMX20_02730 at 2885.925 kb on + strand, within MPMX20_02730 at 2885.925 kb on + strand, within MPMX20_02730 at 2886.106 kb on - strand at 2886.133 kb on + strand at 2886.190 kb on + strand, within MPMX20_02731 at 2886.193 kb on - strand, within MPMX20_02731 at 2886.252 kb on - strand, within MPMX20_02731 at 2886.298 kb on + strand, within MPMX20_02731 at 2886.298 kb on + strand, within MPMX20_02731 at 2886.317 kb on + strand, within MPMX20_02731 at 2886.416 kb on + strand at 2886.416 kb on + strand at 2886.416 kb on + strand at 2886.424 kb on - strand at 2886.438 kb on + strand at 2886.471 kb on + strand at 2886.591 kb on - strand, within MPMX20_02732 at 2886.593 kb on - strand, within MPMX20_02732 at 2886.604 kb on + strand, within MPMX20_02732 at 2886.605 kb on - strand, within MPMX20_02732 at 2886.612 kb on - strand, within MPMX20_02732 at 2886.622 kb on - strand, within MPMX20_02732 at 2886.642 kb on - strand, within MPMX20_02732 at 2886.704 kb on + strand at 2886.712 kb on - strand at 2886.715 kb on + strand at 2886.726 kb on + strand at 2886.730 kb on - strand at 2886.730 kb on - strand at 2886.730 kb on - strand at 2886.757 kb on - strand at 2886.782 kb on + strand at 2886.782 kb on + strand at 2886.782 kb on + strand at 2886.790 kb on - strand at 2886.790 kb on - strand at 2886.790 kb on - strand at 2886.848 kb on - strand, within MPMX20_02733 at 2886.863 kb on - strand, within MPMX20_02733 at 2886.863 kb on - strand, within MPMX20_02733 at 2886.869 kb on - strand, within MPMX20_02733 at 2886.882 kb on + strand, within MPMX20_02733 at 2886.890 kb on - strand, within MPMX20_02733 at 2886.890 kb on - strand, within MPMX20_02733 at 2886.955 kb on + strand, within MPMX20_02733 at 2886.963 kb on - strand, within MPMX20_02733 at 2886.963 kb on - strand, within MPMX20_02733 at 2886.971 kb on + strand, within MPMX20_02733 at 2887.014 kb on + strand, within MPMX20_02733 at 2887.014 kb on + strand, within MPMX20_02733 at 2887.022 kb on - strand, within MPMX20_02733 at 2887.022 kb on - strand, within MPMX20_02733 at 2887.027 kb on - strand, within MPMX20_02733 at 2887.120 kb on + strand at 2887.128 kb on - strand at 2887.158 kb on + strand at 2887.171 kb on + strand at 2887.171 kb on + strand at 2887.194 kb on - strand at 2887.205 kb on - strand, within MPMX20_02734 at 2887.259 kb on + strand, within MPMX20_02734 at 2887.283 kb on + strand, within MPMX20_02734 at 2887.291 kb on - strand, within MPMX20_02734 at 2887.300 kb on + strand, within MPMX20_02734 at 2887.301 kb on - strand, within MPMX20_02734 at 2887.301 kb on - strand, within MPMX20_02734 at 2887.306 kb on - strand, within MPMX20_02734 at 2887.335 kb on - strand, within MPMX20_02734 at 2887.387 kb on - strand, within MPMX20_02734 at 2887.391 kb on + strand, within MPMX20_02734 at 2887.396 kb on + strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.410 kb on - strand, within MPMX20_02734 at 2887.418 kb on - strand, within MPMX20_02734 at 2887.436 kb on - strand, within MPMX20_02734 at 2887.478 kb on + strand, within MPMX20_02734 at 2887.492 kb on + strand, within MPMX20_02734 at 2887.493 kb on + strand, within MPMX20_02734 at 2887.501 kb on - strand, within MPMX20_02734 at 2887.551 kb on + strand, within MPMX20_02734 at 2887.559 kb on - strand, within MPMX20_02734 at 2887.564 kb on - strand, within MPMX20_02734 at 2887.569 kb on - strand, within MPMX20_02734 at 2887.603 kb on - strand, within MPMX20_02734 at 2887.607 kb on + strand, within MPMX20_02734 at 2887.622 kb on - strand, within MPMX20_02734 at 2887.631 kb on + strand, within MPMX20_02734
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,885,515 + MPMX20_02730 0.38 -2.2 2,885,523 - MPMX20_02730 0.39 +1.4 2,885,523 - MPMX20_02730 0.39 -2.2 2,885,534 + MPMX20_02730 0.40 +1.9 2,885,534 + MPMX20_02730 0.40 -1.2 2,885,534 + MPMX20_02730 0.40 -0.1 2,885,542 - MPMX20_02730 0.41 +0.4 2,885,542 - MPMX20_02730 0.41 +0.3 2,885,542 - MPMX20_02730 0.41 -1.3 2,885,542 - MPMX20_02730 0.41 +2.2 2,885,555 - MPMX20_02730 0.42 +0.6 2,885,562 + MPMX20_02730 0.43 +0.6 2,885,562 + MPMX20_02730 0.43 +1.1 2,885,562 + MPMX20_02730 0.43 +1.8 2,885,570 - MPMX20_02730 0.44 -2.9 2,885,570 - MPMX20_02730 0.44 +2.7 2,885,579 - MPMX20_02730 0.45 +3.2 2,885,636 - MPMX20_02730 0.50 -4.2 2,885,659 + MPMX20_02730 0.53 +0.6 2,885,766 + MPMX20_02730 0.64 +1.0 2,885,820 - MPMX20_02730 0.69 -2.7 2,885,861 - MPMX20_02730 0.73 +1.7 2,885,861 - MPMX20_02730 0.73 +0.8 2,885,864 - MPMX20_02730 0.73 +0.3 2,885,925 + MPMX20_02730 0.80 +1.2 2,885,925 + MPMX20_02730 0.80 -0.4 2,886,106 - -0.7 2,886,133 + -1.6 2,886,190 + MPMX20_02731 0.14 -3.9 2,886,193 - MPMX20_02731 0.15 +1.0 2,886,252 - MPMX20_02731 0.35 +0.7 2,886,298 + MPMX20_02731 0.51 -0.2 2,886,298 + MPMX20_02731 0.51 -0.5 2,886,317 + MPMX20_02731 0.57 +0.7 2,886,416 + -2.1 2,886,416 + -0.6 2,886,416 + -0.1 2,886,424 - -3.0 2,886,438 + +2.8 2,886,471 + -3.7 2,886,591 - MPMX20_02732 0.53 -3.0 2,886,593 - MPMX20_02732 0.54 -0.0 2,886,604 + MPMX20_02732 0.62 -1.2 2,886,605 - MPMX20_02732 0.62 -0.2 2,886,612 - MPMX20_02732 0.67 -0.6 2,886,622 - MPMX20_02732 0.74 -1.2 2,886,642 - MPMX20_02732 0.88 -2.6 2,886,704 + +2.1 2,886,712 - +0.9 2,886,715 + -3.4 2,886,726 + +0.2 2,886,730 - -0.5 2,886,730 - -0.8 2,886,730 - +1.5 2,886,757 - +1.2 2,886,782 + +1.9 2,886,782 + -2.7 2,886,782 + +0.3 2,886,790 - -3.3 2,886,790 - -2.8 2,886,790 - +1.3 2,886,848 - MPMX20_02733 0.12 +0.2 2,886,863 - MPMX20_02733 0.19 -0.4 2,886,863 - MPMX20_02733 0.19 -1.0 2,886,869 - MPMX20_02733 0.21 +2.4 2,886,882 + MPMX20_02733 0.27 -0.6 2,886,890 - MPMX20_02733 0.30 -0.1 2,886,890 - MPMX20_02733 0.30 -0.7 2,886,955 + MPMX20_02733 0.57 +1.9 2,886,963 - MPMX20_02733 0.60 -1.3 2,886,963 - MPMX20_02733 0.60 +0.8 2,886,971 + MPMX20_02733 0.64 +1.1 2,887,014 + MPMX20_02733 0.82 -1.3 2,887,014 + MPMX20_02733 0.82 -3.3 2,887,022 - MPMX20_02733 0.85 -0.1 2,887,022 - MPMX20_02733 0.85 +0.9 2,887,027 - MPMX20_02733 0.87 +0.8 2,887,120 + -1.9 2,887,128 - +1.1 2,887,158 + -1.1 2,887,171 + -2.7 2,887,171 + -1.4 2,887,194 - +0.1 2,887,205 - MPMX20_02734 0.10 +0.0 2,887,259 + MPMX20_02734 0.17 +1.1 2,887,283 + MPMX20_02734 0.20 -0.1 2,887,291 - MPMX20_02734 0.21 -1.0 2,887,300 + MPMX20_02734 0.22 +0.2 2,887,301 - MPMX20_02734 0.23 +1.7 2,887,301 - MPMX20_02734 0.23 -0.7 2,887,306 - MPMX20_02734 0.23 -0.8 2,887,335 - MPMX20_02734 0.27 -0.5 2,887,387 - MPMX20_02734 0.33 +1.9 2,887,391 + MPMX20_02734 0.34 -1.2 2,887,396 + MPMX20_02734 0.35 -2.3 2,887,399 - MPMX20_02734 0.35 -1.2 2,887,399 - MPMX20_02734 0.35 +1.1 2,887,399 - MPMX20_02734 0.35 -1.0 2,887,410 - MPMX20_02734 0.36 -3.5 2,887,418 - MPMX20_02734 0.37 -2.4 2,887,436 - MPMX20_02734 0.40 -3.7 2,887,478 + MPMX20_02734 0.45 -0.1 2,887,492 + MPMX20_02734 0.47 -0.1 2,887,493 + MPMX20_02734 0.47 +0.1 2,887,501 - MPMX20_02734 0.48 -2.6 2,887,551 + MPMX20_02734 0.54 +0.2 2,887,559 - MPMX20_02734 0.55 -1.0 2,887,564 - MPMX20_02734 0.56 -3.4 2,887,569 - MPMX20_02734 0.56 +1.9 2,887,603 - MPMX20_02734 0.61 -1.4 2,887,607 + MPMX20_02734 0.61 +0.9 2,887,622 - MPMX20_02734 0.63 +0.7 2,887,631 + MPMX20_02734 0.64 -2.4
Or see this region's nucleotide sequence