Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01850 and MPMX20_01851 are separated by 167 nucleotides MPMX20_01851 and MPMX20_01852 are separated by 116 nucleotides
MPMX20_01850: MPMX20_01850 - Protease 4, at 1,943,143 to 1,944,999
_01850
MPMX20_01851: MPMX20_01851 - Putative NAD(P)H nitroreductase YdjA, at 1,945,167 to 1,945,718
_01851
MPMX20_01852: MPMX20_01852 - Selenide, water dikinase, at 1,945,835 to 1,946,878
_01852
Position (kb)
1945
1946 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1944.169 kb on - strand, within MPMX20_01850 at 1944.197 kb on + strand, within MPMX20_01850 at 1944.197 kb on + strand, within MPMX20_01850 at 1944.197 kb on + strand, within MPMX20_01850 at 1944.205 kb on - strand, within MPMX20_01850 at 1944.205 kb on - strand, within MPMX20_01850 at 1944.394 kb on + strand, within MPMX20_01850 at 1944.396 kb on + strand, within MPMX20_01850 at 1944.459 kb on - strand, within MPMX20_01850 at 1944.470 kb on + strand, within MPMX20_01850 at 1944.470 kb on + strand, within MPMX20_01850 at 1944.478 kb on - strand, within MPMX20_01850 at 1944.502 kb on + strand, within MPMX20_01850 at 1944.525 kb on + strand, within MPMX20_01850 at 1944.539 kb on - strand, within MPMX20_01850 at 1944.541 kb on + strand, within MPMX20_01850 at 1944.614 kb on - strand, within MPMX20_01850 at 1944.674 kb on + strand, within MPMX20_01850 at 1944.682 kb on - strand, within MPMX20_01850 at 1944.692 kb on + strand, within MPMX20_01850 at 1944.786 kb on - strand, within MPMX20_01850 at 1944.938 kb on + strand at 1944.938 kb on + strand at 1944.948 kb on + strand at 1944.959 kb on + strand at 1944.984 kb on + strand at 1945.016 kb on + strand at 1945.098 kb on + strand at 1945.098 kb on - strand at 1945.103 kb on - strand at 1945.174 kb on + strand at 1945.174 kb on + strand at 1945.174 kb on + strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.182 kb on - strand at 1945.212 kb on - strand at 1945.285 kb on - strand, within MPMX20_01851 at 1945.285 kb on - strand, within MPMX20_01851 at 1945.366 kb on - strand, within MPMX20_01851 at 1945.438 kb on - strand, within MPMX20_01851 at 1945.475 kb on + strand, within MPMX20_01851 at 1945.536 kb on + strand, within MPMX20_01851 at 1945.542 kb on + strand, within MPMX20_01851 at 1945.542 kb on + strand, within MPMX20_01851 at 1945.543 kb on + strand, within MPMX20_01851 at 1945.600 kb on + strand, within MPMX20_01851 at 1945.666 kb on - strand at 1945.666 kb on - strand at 1945.690 kb on + strand at 1945.730 kb on + strand at 1945.774 kb on + strand at 1945.779 kb on - strand at 1945.802 kb on + strand at 1945.829 kb on - strand at 1945.870 kb on - strand at 1945.926 kb on + strand at 1945.927 kb on - strand at 1945.934 kb on - strand at 1945.936 kb on + strand at 1945.950 kb on + strand, within MPMX20_01852 at 1945.995 kb on + strand, within MPMX20_01852 at 1946.051 kb on + strand, within MPMX20_01852 at 1946.089 kb on + strand, within MPMX20_01852 at 1946.155 kb on - strand, within MPMX20_01852 at 1946.170 kb on - strand, within MPMX20_01852 at 1946.210 kb on + strand, within MPMX20_01852 at 1946.326 kb on + strand, within MPMX20_01852 at 1946.354 kb on - strand, within MPMX20_01852 at 1946.382 kb on - strand, within MPMX20_01852 at 1946.384 kb on - strand, within MPMX20_01852 at 1946.386 kb on + strand, within MPMX20_01852 at 1946.394 kb on - strand, within MPMX20_01852 at 1946.426 kb on + strand, within MPMX20_01852 at 1946.426 kb on + strand, within MPMX20_01852 at 1946.434 kb on - strand, within MPMX20_01852 at 1946.471 kb on + strand, within MPMX20_01852 at 1946.471 kb on + strand, within MPMX20_01852 at 1946.516 kb on - strand, within MPMX20_01852 at 1946.523 kb on + strand, within MPMX20_01852 at 1946.523 kb on + strand, within MPMX20_01852 at 1946.554 kb on + strand, within MPMX20_01852 at 1946.581 kb on + strand, within MPMX20_01852 at 1946.623 kb on - strand, within MPMX20_01852 at 1946.717 kb on + strand, within MPMX20_01852
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,944,169 - MPMX20_01850 0.55 -4.2 1,944,197 + MPMX20_01850 0.57 +2.1 1,944,197 + MPMX20_01850 0.57 +0.6 1,944,197 + MPMX20_01850 0.57 -0.7 1,944,205 - MPMX20_01850 0.57 +3.5 1,944,205 - MPMX20_01850 0.57 -0.4 1,944,394 + MPMX20_01850 0.67 +1.5 1,944,396 + MPMX20_01850 0.67 +0.9 1,944,459 - MPMX20_01850 0.71 -1.6 1,944,470 + MPMX20_01850 0.71 +1.5 1,944,470 + MPMX20_01850 0.71 -1.3 1,944,478 - MPMX20_01850 0.72 +0.6 1,944,502 + MPMX20_01850 0.73 -0.5 1,944,525 + MPMX20_01850 0.74 -1.5 1,944,539 - MPMX20_01850 0.75 -3.2 1,944,541 + MPMX20_01850 0.75 -0.1 1,944,614 - MPMX20_01850 0.79 +0.1 1,944,674 + MPMX20_01850 0.82 +1.4 1,944,682 - MPMX20_01850 0.83 -1.5 1,944,692 + MPMX20_01850 0.83 -0.1 1,944,786 - MPMX20_01850 0.88 +0.5 1,944,938 + -1.0 1,944,938 + +1.3 1,944,948 + -0.0 1,944,959 + +0.7 1,944,984 + -1.5 1,945,016 + -2.2 1,945,098 + -0.1 1,945,098 - -1.6 1,945,103 - +1.6 1,945,174 + -1.7 1,945,174 + +0.0 1,945,174 + +0.5 1,945,182 - -2.6 1,945,182 - +0.5 1,945,182 - -0.2 1,945,182 - -0.8 1,945,182 - +0.6 1,945,182 - +0.9 1,945,212 - -0.9 1,945,285 - MPMX20_01851 0.21 -3.2 1,945,285 - MPMX20_01851 0.21 -0.2 1,945,366 - MPMX20_01851 0.36 -1.7 1,945,438 - MPMX20_01851 0.49 -1.1 1,945,475 + MPMX20_01851 0.56 -0.6 1,945,536 + MPMX20_01851 0.67 -3.4 1,945,542 + MPMX20_01851 0.68 -0.6 1,945,542 + MPMX20_01851 0.68 -1.1 1,945,543 + MPMX20_01851 0.68 -0.2 1,945,600 + MPMX20_01851 0.78 -1.3 1,945,666 - +1.9 1,945,666 - +1.2 1,945,690 + +0.2 1,945,730 + -1.8 1,945,774 + +1.8 1,945,779 - -1.5 1,945,802 + +0.3 1,945,829 - +0.1 1,945,870 - +0.3 1,945,926 + +0.8 1,945,927 - +1.4 1,945,934 - +1.4 1,945,936 + +1.7 1,945,950 + MPMX20_01852 0.11 -1.3 1,945,995 + MPMX20_01852 0.15 -0.9 1,946,051 + MPMX20_01852 0.21 +0.6 1,946,089 + MPMX20_01852 0.24 +1.6 1,946,155 - MPMX20_01852 0.31 -1.3 1,946,170 - MPMX20_01852 0.32 -1.5 1,946,210 + MPMX20_01852 0.36 +0.6 1,946,326 + MPMX20_01852 0.47 +1.3 1,946,354 - MPMX20_01852 0.50 -1.4 1,946,382 - MPMX20_01852 0.52 +1.6 1,946,384 - MPMX20_01852 0.53 -2.0 1,946,386 + MPMX20_01852 0.53 -2.0 1,946,394 - MPMX20_01852 0.54 +0.1 1,946,426 + MPMX20_01852 0.57 -3.0 1,946,426 + MPMX20_01852 0.57 +0.1 1,946,434 - MPMX20_01852 0.57 -2.4 1,946,471 + MPMX20_01852 0.61 -1.1 1,946,471 + MPMX20_01852 0.61 -1.7 1,946,516 - MPMX20_01852 0.65 -1.5 1,946,523 + MPMX20_01852 0.66 -0.9 1,946,523 + MPMX20_01852 0.66 -0.2 1,946,554 + MPMX20_01852 0.69 -3.4 1,946,581 + MPMX20_01852 0.71 -1.2 1,946,623 - MPMX20_01852 0.75 -3.2 1,946,717 + MPMX20_01852 0.84 +1.2
Or see this region's nucleotide sequence