Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01545

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01544 and MPMX20_01545 are separated by 371 nucleotidesMPMX20_01545 and MPMX20_01546 are separated by 70 nucleotidesMPMX20_01546 and MPMX20_01547 are separated by 284 nucleotides MPMX20_01544: MPMX20_01544 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,615,348 to 1,617,627 _01544 MPMX20_01545: MPMX20_01545 - hypothetical protein, at 1,617,999 to 1,618,445 _01545 MPMX20_01546: MPMX20_01546 - Translation initiation factor IF-1, at 1,618,516 to 1,618,734 _01546 MPMX20_01547: MPMX20_01547 - Leucyl/phenylalanyl-tRNA--protein transferase, at 1,619,019 to 1,619,723 _01547 Position (kb) 1617 1618 1619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1617.026 kb on + strand, within MPMX20_01544at 1617.034 kb on - strand, within MPMX20_01544at 1617.059 kb on + strand, within MPMX20_01544at 1617.153 kb on + strand, within MPMX20_01544at 1617.175 kb on - strand, within MPMX20_01544at 1617.203 kb on + strand, within MPMX20_01544at 1617.224 kb on - strand, within MPMX20_01544at 1617.233 kb on + strand, within MPMX20_01544at 1617.295 kb on - strand, within MPMX20_01544at 1617.306 kb on + strand, within MPMX20_01544at 1617.314 kb on - strand, within MPMX20_01544at 1617.314 kb on - strand, within MPMX20_01544at 1617.430 kb on + strandat 1617.438 kb on - strandat 1617.453 kb on - strandat 1617.541 kb on - strandat 1617.548 kb on - strandat 1617.576 kb on + strandat 1617.603 kb on + strandat 1617.609 kb on + strandat 1617.810 kb on - strandat 1617.815 kb on + strandat 1617.849 kb on + strandat 1617.851 kb on + strandat 1617.857 kb on - strandat 1617.913 kb on - strandat 1617.989 kb on + strandat 1618.025 kb on + strandat 1618.049 kb on - strand, within MPMX20_01545at 1618.152 kb on - strand, within MPMX20_01545at 1618.286 kb on + strand, within MPMX20_01545at 1618.335 kb on + strand, within MPMX20_01545at 1618.353 kb on + strand, within MPMX20_01545at 1618.399 kb on + strand, within MPMX20_01545at 1618.404 kb on + strandat 1618.404 kb on + strandat 1618.409 kb on + strandat 1618.409 kb on + strandat 1618.412 kb on - strandat 1618.419 kb on + strandat 1618.420 kb on + strandat 1618.434 kb on + strandat 1618.439 kb on + strandat 1618.439 kb on + strandat 1618.439 kb on + strandat 1618.439 kb on + strandat 1618.439 kb on + strandat 1618.439 kb on + strandat 1618.447 kb on - strandat 1618.447 kb on - strandat 1618.467 kb on + strandat 1618.472 kb on + strandat 1618.472 kb on + strandat 1618.472 kb on + strandat 1618.475 kb on - strandat 1618.480 kb on - strandat 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.860 kb on + strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.868 kb on - strandat 1618.894 kb on + strandat 1618.902 kb on - strandat 1618.902 kb on - strandat 1618.902 kb on - strandat 1618.904 kb on + strandat 1618.912 kb on - strandat 1618.919 kb on - strandat 1618.938 kb on + strandat 1618.968 kb on - strandat 1618.973 kb on - strandat 1618.973 kb on - strandat 1618.973 kb on - strandat 1619.140 kb on + strand, within MPMX20_01547at 1619.140 kb on + strand, within MPMX20_01547at 1619.148 kb on - strand, within MPMX20_01547at 1619.268 kb on - strand, within MPMX20_01547at 1619.287 kb on + strand, within MPMX20_01547at 1619.292 kb on - strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.324 kb on + strand, within MPMX20_01547at 1619.326 kb on + strand, within MPMX20_01547at 1619.326 kb on + strand, within MPMX20_01547at 1619.332 kb on - strand, within MPMX20_01547at 1619.411 kb on + strand, within MPMX20_01547at 1619.421 kb on + strand, within MPMX20_01547at 1619.425 kb on + strand, within MPMX20_01547at 1619.429 kb on - strand, within MPMX20_01547at 1619.429 kb on - strand, within MPMX20_01547

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,617,026 + MPMX20_01544 0.74 +0.4
1,617,034 - MPMX20_01544 0.74 -2.7
1,617,059 + MPMX20_01544 0.75 +2.6
1,617,153 + MPMX20_01544 0.79 +0.1
1,617,175 - MPMX20_01544 0.80 -2.2
1,617,203 + MPMX20_01544 0.81 -3.0
1,617,224 - MPMX20_01544 0.82 -1.1
1,617,233 + MPMX20_01544 0.83 -1.5
1,617,295 - MPMX20_01544 0.85 -1.0
1,617,306 + MPMX20_01544 0.86 +0.4
1,617,314 - MPMX20_01544 0.86 -3.8
1,617,314 - MPMX20_01544 0.86 +0.7
1,617,430 + -2.4
1,617,438 - -2.3
1,617,453 - -2.3
1,617,541 - -2.3
1,617,548 - +1.0
1,617,576 + -0.5
1,617,603 + -3.9
1,617,609 + +1.3
1,617,810 - -0.9
1,617,815 + -1.3
1,617,849 + -2.4
1,617,851 + -0.7
1,617,857 - -2.7
1,617,913 - -0.7
1,617,989 + -0.9
1,618,025 + +1.3
1,618,049 - MPMX20_01545 0.11 +0.1
1,618,152 - MPMX20_01545 0.34 -0.2
1,618,286 + MPMX20_01545 0.64 -1.9
1,618,335 + MPMX20_01545 0.75 -1.8
1,618,353 + MPMX20_01545 0.79 -0.1
1,618,399 + MPMX20_01545 0.89 -2.5
1,618,404 + -1.5
1,618,404 + +1.2
1,618,409 + -2.9
1,618,409 + +0.5
1,618,412 - +1.2
1,618,419 + +3.5
1,618,420 + -2.0
1,618,434 + -1.5
1,618,439 + -1.7
1,618,439 + +1.1
1,618,439 + +1.3
1,618,439 + +1.2
1,618,439 + -2.8
1,618,439 + -2.1
1,618,447 - -3.2
1,618,447 - +1.4
1,618,467 + -2.6
1,618,472 + +1.4
1,618,472 + +0.9
1,618,472 + +1.7
1,618,475 - +0.9
1,618,480 - -2.9
1,618,860 + -0.3
1,618,860 + +2.5
1,618,860 + -0.1
1,618,860 + -0.6
1,618,868 - +0.4
1,618,868 - -0.3
1,618,868 - -2.9
1,618,868 - -2.6
1,618,894 + +1.8
1,618,902 - +0.8
1,618,902 - -0.9
1,618,902 - +2.3
1,618,904 + -3.1
1,618,912 - -3.3
1,618,919 - -3.0
1,618,938 + -1.1
1,618,968 - +0.8
1,618,973 - +1.3
1,618,973 - -1.3
1,618,973 - +0.1
1,619,140 + MPMX20_01547 0.17 +0.5
1,619,140 + MPMX20_01547 0.17 -3.1
1,619,148 - MPMX20_01547 0.18 -1.6
1,619,268 - MPMX20_01547 0.35 +1.8
1,619,287 + MPMX20_01547 0.38 -0.3
1,619,292 - MPMX20_01547 0.39 +0.9
1,619,324 + MPMX20_01547 0.43 -0.0
1,619,324 + MPMX20_01547 0.43 +1.0
1,619,324 + MPMX20_01547 0.43 -2.6
1,619,326 + MPMX20_01547 0.44 +0.2
1,619,326 + MPMX20_01547 0.44 -0.6
1,619,332 - MPMX20_01547 0.44 -0.6
1,619,411 + MPMX20_01547 0.56 +0.4
1,619,421 + MPMX20_01547 0.57 -1.8
1,619,425 + MPMX20_01547 0.58 -0.1
1,619,429 - MPMX20_01547 0.58 +3.1
1,619,429 - MPMX20_01547 0.58 -1.3

Or see this region's nucleotide sequence