Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01184 and MPMX20_01185 are separated by 116 nucleotides MPMX20_01185 and MPMX20_01186 are separated by 175 nucleotides MPMX20_01186 and MPMX20_01187 overlap by 4 nucleotides
MPMX20_01184: MPMX20_01184 - hypothetical protein, at 1,244,386 to 1,247,403
_01184
MPMX20_01185: MPMX20_01185 - hypothetical protein, at 1,247,520 to 1,247,834
_01185
MPMX20_01186: MPMX20_01186 - Transcriptional activator protein ExaE, at 1,248,010 to 1,248,642
_01186
MPMX20_01187: MPMX20_01187 - Sensor histidine kinase RcsC, at 1,248,639 to 1,250,426
_01187
Position (kb)
1247
1248 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1246.587 kb on + strand, within MPMX20_01184 at 1246.595 kb on - strand, within MPMX20_01184 at 1246.595 kb on - strand, within MPMX20_01184 at 1246.595 kb on - strand, within MPMX20_01184 at 1246.595 kb on - strand, within MPMX20_01184 at 1246.614 kb on - strand, within MPMX20_01184 at 1246.682 kb on - strand, within MPMX20_01184 at 1246.713 kb on + strand, within MPMX20_01184 at 1246.847 kb on + strand, within MPMX20_01184 at 1246.849 kb on + strand, within MPMX20_01184 at 1246.855 kb on - strand, within MPMX20_01184 at 1246.896 kb on + strand, within MPMX20_01184 at 1246.896 kb on + strand, within MPMX20_01184 at 1246.904 kb on - strand, within MPMX20_01184 at 1246.937 kb on - strand, within MPMX20_01184 at 1246.995 kb on + strand, within MPMX20_01184 at 1246.995 kb on + strand, within MPMX20_01184 at 1247.000 kb on + strand, within MPMX20_01184 at 1247.003 kb on - strand, within MPMX20_01184 at 1247.005 kb on + strand, within MPMX20_01184 at 1247.005 kb on + strand, within MPMX20_01184 at 1247.040 kb on + strand, within MPMX20_01184 at 1247.040 kb on + strand, within MPMX20_01184 at 1247.040 kb on + strand, within MPMX20_01184 at 1247.048 kb on - strand, within MPMX20_01184 at 1247.054 kb on - strand, within MPMX20_01184 at 1247.055 kb on - strand, within MPMX20_01184 at 1247.084 kb on + strand, within MPMX20_01184 at 1247.084 kb on + strand, within MPMX20_01184 at 1247.084 kb on + strand, within MPMX20_01184 at 1247.086 kb on + strand, within MPMX20_01184 at 1247.091 kb on + strand, within MPMX20_01184 at 1247.091 kb on + strand, within MPMX20_01184 at 1247.092 kb on - strand, within MPMX20_01184 at 1247.092 kb on - strand, within MPMX20_01184 at 1247.096 kb on + strand, within MPMX20_01184 at 1247.138 kb on + strand at 1247.140 kb on + strand at 1247.146 kb on - strand at 1247.146 kb on - strand at 1247.154 kb on - strand at 1247.164 kb on - strand at 1247.164 kb on - strand at 1247.164 kb on - strand at 1247.192 kb on + strand at 1247.192 kb on + strand at 1247.192 kb on + strand at 1247.200 kb on + strand at 1247.200 kb on + strand at 1247.202 kb on - strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.211 kb on + strand at 1247.219 kb on - strand at 1247.219 kb on - strand at 1247.219 kb on - strand at 1247.219 kb on - strand at 1247.219 kb on - strand at 1247.219 kb on - strand at 1247.222 kb on + strand at 1247.223 kb on + strand at 1247.249 kb on - strand at 1247.304 kb on + strand at 1247.306 kb on + strand at 1247.306 kb on + strand at 1247.309 kb on + strand at 1247.309 kb on + strand at 1247.314 kb on - strand at 1247.320 kb on + strand at 1247.330 kb on + strand at 1247.330 kb on + strand at 1247.333 kb on + strand at 1247.351 kb on + strand at 1247.351 kb on + strand at 1247.354 kb on + strand at 1247.361 kb on + strand at 1247.364 kb on + strand at 1247.364 kb on + strand at 1247.364 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.366 kb on + strand at 1247.373 kb on + strand at 1247.373 kb on + strand at 1247.373 kb on + strand at 1247.373 kb on + strand at 1247.387 kb on + strand at 1247.387 kb on + strand at 1247.388 kb on + strand at 1247.388 kb on + strand at 1247.388 kb on + strand at 1247.388 kb on + strand at 1247.388 kb on + strand at 1247.388 kb on + strand at 1247.405 kb on + strand at 1247.409 kb on + strand at 1247.409 kb on + strand at 1247.409 kb on + strand at 1247.409 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.410 kb on + strand at 1247.413 kb on - strand at 1247.420 kb on + strand at 1247.420 kb on + strand at 1247.420 kb on + strand at 1247.420 kb on + strand at 1247.424 kb on + strand at 1247.424 kb on + strand at 1247.457 kb on + strand at 1247.501 kb on + strand at 1247.547 kb on + strand at 1247.547 kb on + strand at 1247.547 kb on + strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.548 kb on - strand at 1247.554 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.555 kb on - strand, within MPMX20_01185 at 1247.602 kb on - strand, within MPMX20_01185 at 1247.673 kb on - strand, within MPMX20_01185 at 1247.680 kb on - strand, within MPMX20_01185 at 1247.704 kb on - strand, within MPMX20_01185 at 1247.745 kb on - strand, within MPMX20_01185 at 1247.796 kb on + strand, within MPMX20_01185 at 1247.801 kb on + strand, within MPMX20_01185 at 1247.801 kb on + strand, within MPMX20_01185 at 1247.801 kb on + strand, within MPMX20_01185 at 1247.808 kb on + strand at 1247.945 kb on - strand at 1247.958 kb on - strand at 1247.977 kb on - strand at 1247.982 kb on - strand at 1247.984 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.001 kb on - strand at 1248.026 kb on - strand at 1248.038 kb on - strand at 1248.102 kb on + strand, within MPMX20_01186 at 1248.102 kb on + strand, within MPMX20_01186 at 1248.102 kb on + strand, within MPMX20_01186 at 1248.102 kb on + strand, within MPMX20_01186 at 1248.102 kb on + strand, within MPMX20_01186 at 1248.110 kb on - strand, within MPMX20_01186 at 1248.172 kb on - strand, within MPMX20_01186 at 1248.231 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.236 kb on + strand, within MPMX20_01186 at 1248.238 kb on + strand, within MPMX20_01186 at 1248.238 kb on + strand, within MPMX20_01186 at 1248.239 kb on - strand, within MPMX20_01186 at 1248.239 kb on - strand, within MPMX20_01186 at 1248.239 kb on - strand, within MPMX20_01186 at 1248.243 kb on + strand, within MPMX20_01186 at 1248.302 kb on + strand, within MPMX20_01186 at 1248.303 kb on + strand, within MPMX20_01186 at 1248.303 kb on + strand, within MPMX20_01186 at 1248.310 kb on + strand, within MPMX20_01186 at 1248.405 kb on + strand, within MPMX20_01186 at 1248.407 kb on + strand, within MPMX20_01186 at 1248.530 kb on - strand, within MPMX20_01186 at 1248.550 kb on - strand, within MPMX20_01186 at 1248.550 kb on - strand, within MPMX20_01186 at 1248.568 kb on - strand, within MPMX20_01186 at 1248.568 kb on - strand, within MPMX20_01186 at 1248.596 kb on - strand at 1248.598 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.602 kb on - strand at 1248.610 kb on - strand at 1248.615 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.616 kb on - strand at 1248.620 kb on - strand at 1248.628 kb on - strand at 1248.631 kb on - strand at 1248.631 kb on - strand at 1248.665 kb on - strand at 1248.670 kb on + strand at 1248.670 kb on + strand at 1248.674 kb on + strand at 1248.674 kb on + strand at 1248.674 kb on + strand at 1248.674 kb on + strand at 1248.674 kb on + strand at 1248.674 kb on + strand at 1248.682 kb on - strand at 1248.682 kb on - strand at 1248.682 kb on - strand at 1248.728 kb on - strand at 1248.731 kb on - strand at 1248.731 kb on - strand at 1248.731 kb on - strand at 1248.731 kb on - strand at 1248.731 kb on - strand at 1248.731 kb on - strand at 1248.738 kb on - strand at 1248.739 kb on - strand at 1248.739 kb on - strand at 1248.768 kb on + strand at 1248.768 kb on + strand at 1248.768 kb on + strand at 1248.776 kb on - strand at 1248.776 kb on - strand at 1248.787 kb on + strand at 1248.790 kb on - strand at 1248.790 kb on - strand at 1248.797 kb on + strand at 1248.801 kb on - strand at 1248.804 kb on + strand at 1248.804 kb on + strand at 1248.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,246,587 + MPMX20_01184 0.73 -0.8 1,246,595 - MPMX20_01184 0.73 -0.8 1,246,595 - MPMX20_01184 0.73 +0.4 1,246,595 - MPMX20_01184 0.73 +0.9 1,246,595 - MPMX20_01184 0.73 +1.3 1,246,614 - MPMX20_01184 0.74 -3.4 1,246,682 - MPMX20_01184 0.76 +1.2 1,246,713 + MPMX20_01184 0.77 -2.9 1,246,847 + MPMX20_01184 0.82 +0.0 1,246,849 + MPMX20_01184 0.82 -0.5 1,246,855 - MPMX20_01184 0.82 +1.6 1,246,896 + MPMX20_01184 0.83 -0.0 1,246,896 + MPMX20_01184 0.83 +0.8 1,246,904 - MPMX20_01184 0.83 +0.4 1,246,937 - MPMX20_01184 0.85 -3.6 1,246,995 + MPMX20_01184 0.86 +0.2 1,246,995 + MPMX20_01184 0.86 -0.1 1,247,000 + MPMX20_01184 0.87 +0.9 1,247,003 - MPMX20_01184 0.87 -1.2 1,247,005 + MPMX20_01184 0.87 +1.7 1,247,005 + MPMX20_01184 0.87 +0.3 1,247,040 + MPMX20_01184 0.88 +1.2 1,247,040 + MPMX20_01184 0.88 -3.4 1,247,040 + MPMX20_01184 0.88 -0.2 1,247,048 - MPMX20_01184 0.88 -2.6 1,247,054 - MPMX20_01184 0.88 +0.0 1,247,055 - MPMX20_01184 0.88 +1.2 1,247,084 + MPMX20_01184 0.89 +2.0 1,247,084 + MPMX20_01184 0.89 +0.3 1,247,084 + MPMX20_01184 0.89 -3.8 1,247,086 + MPMX20_01184 0.89 -2.1 1,247,091 + MPMX20_01184 0.90 +1.0 1,247,091 + MPMX20_01184 0.90 +0.7 1,247,092 - MPMX20_01184 0.90 +2.2 1,247,092 - MPMX20_01184 0.90 -3.1 1,247,096 + MPMX20_01184 0.90 -1.9 1,247,138 + +2.2 1,247,140 + -1.3 1,247,146 - -3.2 1,247,146 - -1.0 1,247,154 - +0.8 1,247,164 - +0.3 1,247,164 - +0.5 1,247,164 - +1.3 1,247,192 + -0.4 1,247,192 + -2.6 1,247,192 + -1.1 1,247,200 + +2.2 1,247,200 + -3.0 1,247,202 - +0.1 1,247,211 + -1.8 1,247,211 + -3.4 1,247,211 + +0.6 1,247,211 + -0.3 1,247,211 + -0.8 1,247,211 + +1.0 1,247,211 + +0.5 1,247,211 + -3.5 1,247,211 + -4.1 1,247,211 + +0.7 1,247,211 + -1.3 1,247,211 + +0.3 1,247,211 + +2.3 1,247,211 + +1.0 1,247,219 - -2.4 1,247,219 - +0.7 1,247,219 - +1.8 1,247,219 - +0.2 1,247,219 - -2.0 1,247,219 - -2.3 1,247,222 + -0.8 1,247,223 + -2.1 1,247,249 - -1.3 1,247,304 + +0.1 1,247,306 + +1.4 1,247,306 + -2.8 1,247,309 + +0.2 1,247,309 + +1.7 1,247,314 - -1.1 1,247,320 + -2.3 1,247,330 + -1.0 1,247,330 + +1.2 1,247,333 + -0.7 1,247,351 + +2.5 1,247,351 + +0.2 1,247,354 + +1.0 1,247,361 + +0.2 1,247,364 + -0.3 1,247,364 + -1.8 1,247,364 + +0.4 1,247,366 + -0.5 1,247,366 + -0.8 1,247,366 + +1.5 1,247,366 + -3.7 1,247,366 + +0.5 1,247,366 + -1.4 1,247,366 + -2.5 1,247,366 + -2.9 1,247,373 + +2.7 1,247,373 + -0.1 1,247,373 + -0.6 1,247,373 + +0.9 1,247,387 + -3.6 1,247,387 + -1.0 1,247,388 + -1.0 1,247,388 + +1.9 1,247,388 + +0.9 1,247,388 + -0.3 1,247,388 + -1.7 1,247,388 + +1.7 1,247,405 + -3.2 1,247,409 + -2.8 1,247,409 + +0.7 1,247,409 + -0.5 1,247,409 + +0.3 1,247,410 + -0.1 1,247,410 + -2.4 1,247,410 + +1.3 1,247,410 + +1.0 1,247,410 + -2.0 1,247,410 + -0.3 1,247,410 + +0.1 1,247,410 + +1.0 1,247,410 + +1.2 1,247,410 + -0.5 1,247,410 + -0.4 1,247,410 + +0.5 1,247,413 - +1.2 1,247,420 + +1.5 1,247,420 + -1.7 1,247,420 + -1.1 1,247,420 + +0.8 1,247,424 + +0.1 1,247,424 + -0.3 1,247,457 + +0.2 1,247,501 + -2.3 1,247,547 + -2.1 1,247,547 + -1.7 1,247,547 + -2.3 1,247,548 - -1.4 1,247,548 - +0.2 1,247,548 - -3.9 1,247,548 - +1.6 1,247,548 - -0.8 1,247,548 - +0.9 1,247,548 - -2.4 1,247,554 - MPMX20_01185 0.11 -1.7 1,247,555 - MPMX20_01185 0.11 +0.5 1,247,555 - MPMX20_01185 0.11 -2.3 1,247,555 - MPMX20_01185 0.11 +0.6 1,247,555 - MPMX20_01185 0.11 -3.4 1,247,555 - MPMX20_01185 0.11 -1.0 1,247,555 - MPMX20_01185 0.11 -1.1 1,247,555 - MPMX20_01185 0.11 -4.1 1,247,555 - MPMX20_01185 0.11 -0.3 1,247,555 - MPMX20_01185 0.11 -2.2 1,247,602 - MPMX20_01185 0.26 +0.5 1,247,673 - MPMX20_01185 0.49 +2.0 1,247,680 - MPMX20_01185 0.51 -1.7 1,247,704 - MPMX20_01185 0.58 -0.3 1,247,745 - MPMX20_01185 0.71 -3.2 1,247,796 + MPMX20_01185 0.88 -0.3 1,247,801 + MPMX20_01185 0.89 +1.5 1,247,801 + MPMX20_01185 0.89 +0.0 1,247,801 + MPMX20_01185 0.89 -0.5 1,247,808 + -0.8 1,247,945 - -2.6 1,247,958 - -1.8 1,247,977 - -1.3 1,247,982 - +0.1 1,247,984 - -1.1 1,248,001 - -1.4 1,248,001 - -0.8 1,248,001 - +0.9 1,248,001 - -0.2 1,248,001 - -1.0 1,248,001 - -0.3 1,248,001 - -1.1 1,248,001 - -0.8 1,248,001 - -2.5 1,248,001 - +2.0 1,248,001 - -0.3 1,248,001 - +0.5 1,248,026 - +1.3 1,248,038 - +0.5 1,248,102 + MPMX20_01186 0.15 +1.6 1,248,102 + MPMX20_01186 0.15 +0.7 1,248,102 + MPMX20_01186 0.15 -0.3 1,248,102 + MPMX20_01186 0.15 -0.8 1,248,102 + MPMX20_01186 0.15 -1.0 1,248,110 - MPMX20_01186 0.16 -1.1 1,248,172 - MPMX20_01186 0.26 -1.3 1,248,231 + MPMX20_01186 0.35 +2.0 1,248,236 + MPMX20_01186 0.36 -0.1 1,248,236 + MPMX20_01186 0.36 +0.0 1,248,236 + MPMX20_01186 0.36 +3.5 1,248,236 + MPMX20_01186 0.36 -1.7 1,248,236 + MPMX20_01186 0.36 +1.1 1,248,236 + MPMX20_01186 0.36 -2.3 1,248,236 + MPMX20_01186 0.36 -0.8 1,248,236 + MPMX20_01186 0.36 -0.2 1,248,236 + MPMX20_01186 0.36 -1.7 1,248,238 + MPMX20_01186 0.36 -1.1 1,248,238 + MPMX20_01186 0.36 +0.5 1,248,239 - MPMX20_01186 0.36 +0.6 1,248,239 - MPMX20_01186 0.36 -1.0 1,248,239 - MPMX20_01186 0.36 -1.8 1,248,243 + MPMX20_01186 0.37 -2.5 1,248,302 + MPMX20_01186 0.46 +2.2 1,248,303 + MPMX20_01186 0.46 +1.3 1,248,303 + MPMX20_01186 0.46 -0.4 1,248,310 + MPMX20_01186 0.47 -2.8 1,248,405 + MPMX20_01186 0.62 +1.3 1,248,407 + MPMX20_01186 0.63 -1.8 1,248,530 - MPMX20_01186 0.82 -1.5 1,248,550 - MPMX20_01186 0.85 -0.3 1,248,550 - MPMX20_01186 0.85 -2.5 1,248,568 - MPMX20_01186 0.88 -0.1 1,248,568 - MPMX20_01186 0.88 -1.8 1,248,596 - +0.5 1,248,598 - -0.3 1,248,602 - -2.0 1,248,602 - -2.4 1,248,602 - +1.0 1,248,602 - -3.1 1,248,602 - +1.0 1,248,602 - -1.3 1,248,602 - -1.5 1,248,602 - +0.2 1,248,602 - +2.7 1,248,602 - -0.0 1,248,602 - +2.5 1,248,602 - -1.4 1,248,602 - -1.0 1,248,602 - -2.3 1,248,602 - +2.0 1,248,610 - +1.0 1,248,615 - +0.9 1,248,616 - +0.9 1,248,616 - -2.3 1,248,616 - +1.7 1,248,616 - -2.5 1,248,616 - -3.2 1,248,616 - -1.3 1,248,616 - +0.6 1,248,616 - -0.5 1,248,616 - -1.9 1,248,616 - -0.3 1,248,616 - -1.8 1,248,616 - -0.8 1,248,616 - +0.7 1,248,620 - -3.2 1,248,628 - +0.7 1,248,631 - -1.0 1,248,631 - +1.6 1,248,665 - -1.9 1,248,670 + -0.1 1,248,670 + +2.0 1,248,674 + +0.4 1,248,674 + -4.3 1,248,674 + -2.0 1,248,674 + +2.0 1,248,674 + -0.5 1,248,674 + +0.6 1,248,682 - -2.2 1,248,682 - -1.4 1,248,682 - -2.6 1,248,728 - +0.0 1,248,731 - -2.7 1,248,731 - +0.0 1,248,731 - +1.8 1,248,731 - +1.0 1,248,731 - +1.5 1,248,731 - -1.5 1,248,738 - +1.0 1,248,739 - -3.2 1,248,739 - +1.8 1,248,768 + -1.1 1,248,768 + -1.5 1,248,768 + +0.8 1,248,776 - -1.0 1,248,776 - -1.1 1,248,787 + -0.8 1,248,790 - +0.0 1,248,790 - +0.5 1,248,797 + -2.1 1,248,801 - -2.4 1,248,804 + +1.1 1,248,804 + -3.0 1,248,805 + +0.4
Or see this region's nucleotide sequence