Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01033

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01032 and MPMX20_01033 are separated by 148 nucleotidesMPMX20_01033 and MPMX20_01034 are separated by 99 nucleotidesMPMX20_01034 and MPMX20_01035 are separated by 60 nucleotides MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945 _01032 MPMX20_01033: MPMX20_01033 - hypothetical protein, at 1,089,094 to 1,089,474 _01033 MPMX20_01034: MPMX20_01034 - Long-chain acyl-CoA thioesterase FadM, at 1,089,574 to 1,089,972 _01034 MPMX20_01035: MPMX20_01035 - 7-cyano-7-deazaguanine synthase, at 1,090,033 to 1,090,728 _01035 Position (kb) 1089 1090Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1088.138 kb on + strand, within MPMX20_01032at 1088.138 kb on + strand, within MPMX20_01032at 1088.146 kb on - strand, within MPMX20_01032at 1088.146 kb on - strand, within MPMX20_01032at 1088.153 kb on + strand, within MPMX20_01032at 1088.248 kb on + strand, within MPMX20_01032at 1088.263 kb on - strand, within MPMX20_01032at 1088.263 kb on - strand, within MPMX20_01032at 1088.292 kb on - strand, within MPMX20_01032at 1088.292 kb on - strand, within MPMX20_01032at 1088.312 kb on + strand, within MPMX20_01032at 1088.384 kb on + strand, within MPMX20_01032at 1088.392 kb on - strand, within MPMX20_01032at 1088.394 kb on + strand, within MPMX20_01032at 1088.416 kb on - strand, within MPMX20_01032at 1088.435 kb on + strand, within MPMX20_01032at 1088.483 kb on + strand, within MPMX20_01032at 1088.491 kb on - strand, within MPMX20_01032at 1088.497 kb on + strand, within MPMX20_01032at 1088.547 kb on - strand, within MPMX20_01032at 1088.642 kb on + strand, within MPMX20_01032at 1088.645 kb on - strand, within MPMX20_01032at 1088.707 kb on + strand, within MPMX20_01032at 1088.762 kb on + strandat 1088.835 kb on + strandat 1088.840 kb on + strandat 1088.840 kb on + strandat 1088.842 kb on + strandat 1088.842 kb on + strandat 1088.848 kb on - strandat 1088.855 kb on - strandat 1089.075 kb on - strandat 1089.125 kb on - strandat 1089.125 kb on - strandat 1089.142 kb on + strand, within MPMX20_01033at 1089.227 kb on + strand, within MPMX20_01033at 1089.284 kb on - strand, within MPMX20_01033at 1089.335 kb on + strand, within MPMX20_01033at 1089.343 kb on - strand, within MPMX20_01033at 1089.361 kb on + strand, within MPMX20_01033at 1089.389 kb on - strand, within MPMX20_01033at 1089.446 kb on + strandat 1089.538 kb on - strandat 1089.563 kb on - strandat 1089.563 kb on - strandat 1089.564 kb on + strandat 1089.624 kb on + strand, within MPMX20_01034at 1089.682 kb on - strand, within MPMX20_01034at 1089.699 kb on + strand, within MPMX20_01034at 1089.776 kb on - strand, within MPMX20_01034at 1089.776 kb on - strand, within MPMX20_01034at 1089.796 kb on - strand, within MPMX20_01034at 1089.834 kb on - strand, within MPMX20_01034at 1089.861 kb on - strand, within MPMX20_01034at 1089.890 kb on - strand, within MPMX20_01034at 1089.894 kb on - strand, within MPMX20_01034at 1089.957 kb on + strandat 1090.116 kb on + strand, within MPMX20_01035at 1090.134 kb on + strand, within MPMX20_01035at 1090.134 kb on + strand, within MPMX20_01035at 1090.141 kb on + strand, within MPMX20_01035at 1090.142 kb on - strand, within MPMX20_01035at 1090.142 kb on - strand, within MPMX20_01035at 1090.176 kb on - strand, within MPMX20_01035at 1090.308 kb on - strand, within MPMX20_01035at 1090.315 kb on - strand, within MPMX20_01035at 1090.440 kb on + strand, within MPMX20_01035at 1090.440 kb on + strand, within MPMX20_01035at 1090.448 kb on - strand, within MPMX20_01035at 1090.448 kb on - strand, within MPMX20_01035

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,088,138 + MPMX20_01032 0.57 +2.3
1,088,138 + MPMX20_01032 0.57 +0.1
1,088,146 - MPMX20_01032 0.57 -0.1
1,088,146 - MPMX20_01032 0.57 +0.6
1,088,153 + MPMX20_01032 0.58 -2.2
1,088,248 + MPMX20_01032 0.63 -0.9
1,088,263 - MPMX20_01032 0.64 -2.8
1,088,263 - MPMX20_01032 0.64 +0.5
1,088,292 - MPMX20_01032 0.65 -3.9
1,088,292 - MPMX20_01032 0.65 -2.9
1,088,312 + MPMX20_01032 0.66 -0.6
1,088,384 + MPMX20_01032 0.70 -1.8
1,088,392 - MPMX20_01032 0.70 +0.4
1,088,394 + MPMX20_01032 0.71 +1.2
1,088,416 - MPMX20_01032 0.72 -0.5
1,088,435 + MPMX20_01032 0.73 +1.9
1,088,483 + MPMX20_01032 0.75 +0.0
1,088,491 - MPMX20_01032 0.76 +0.3
1,088,497 + MPMX20_01032 0.76 -1.6
1,088,547 - MPMX20_01032 0.79 -0.1
1,088,642 + MPMX20_01032 0.84 +2.2
1,088,645 - MPMX20_01032 0.84 -1.0
1,088,707 + MPMX20_01032 0.87 -0.7
1,088,762 + +0.7
1,088,835 + -1.5
1,088,840 + +1.4
1,088,840 + -0.1
1,088,842 + +0.5
1,088,842 + -1.5
1,088,848 - +0.9
1,088,855 - +0.0
1,089,075 - -2.5
1,089,125 - +2.1
1,089,125 - +0.9
1,089,142 + MPMX20_01033 0.13 -1.1
1,089,227 + MPMX20_01033 0.35 -2.3
1,089,284 - MPMX20_01033 0.50 -2.9
1,089,335 + MPMX20_01033 0.63 -0.6
1,089,343 - MPMX20_01033 0.65 -0.2
1,089,361 + MPMX20_01033 0.70 -2.7
1,089,389 - MPMX20_01033 0.77 -0.1
1,089,446 + -0.5
1,089,538 - -3.2
1,089,563 - -0.1
1,089,563 - -0.3
1,089,564 + +0.4
1,089,624 + MPMX20_01034 0.13 +2.3
1,089,682 - MPMX20_01034 0.27 +0.3
1,089,699 + MPMX20_01034 0.31 +0.8
1,089,776 - MPMX20_01034 0.51 +1.4
1,089,776 - MPMX20_01034 0.51 +1.0
1,089,796 - MPMX20_01034 0.56 +0.0
1,089,834 - MPMX20_01034 0.65 -0.2
1,089,861 - MPMX20_01034 0.72 +0.7
1,089,890 - MPMX20_01034 0.79 -0.6
1,089,894 - MPMX20_01034 0.80 -3.1
1,089,957 + +0.7
1,090,116 + MPMX20_01035 0.12 +1.9
1,090,134 + MPMX20_01035 0.15 +0.7
1,090,134 + MPMX20_01035 0.15 +2.8
1,090,141 + MPMX20_01035 0.16 -2.0
1,090,142 - MPMX20_01035 0.16 -2.4
1,090,142 - MPMX20_01035 0.16 -1.7
1,090,176 - MPMX20_01035 0.21 -2.1
1,090,308 - MPMX20_01035 0.40 +0.1
1,090,315 - MPMX20_01035 0.41 +0.3
1,090,440 + MPMX20_01035 0.58 -2.3
1,090,440 + MPMX20_01035 0.58 +0.3
1,090,448 - MPMX20_01035 0.60 +1.3
1,090,448 - MPMX20_01035 0.60 -0.7

Or see this region's nucleotide sequence