Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01032 and MPMX20_01033 are separated by 148 nucleotides MPMX20_01033 and MPMX20_01034 are separated by 99 nucleotides MPMX20_01034 and MPMX20_01035 are separated by 60 nucleotides
MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945
_01032
MPMX20_01033: MPMX20_01033 - hypothetical protein, at 1,089,094 to 1,089,474
_01033
MPMX20_01034: MPMX20_01034 - Long-chain acyl-CoA thioesterase FadM, at 1,089,574 to 1,089,972
_01034
MPMX20_01035: MPMX20_01035 - 7-cyano-7-deazaguanine synthase, at 1,090,033 to 1,090,728
_01035
Position (kb)
1089
1090 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1088.138 kb on + strand, within MPMX20_01032 at 1088.138 kb on + strand, within MPMX20_01032 at 1088.146 kb on - strand, within MPMX20_01032 at 1088.146 kb on - strand, within MPMX20_01032 at 1088.153 kb on + strand, within MPMX20_01032 at 1088.248 kb on + strand, within MPMX20_01032 at 1088.263 kb on - strand, within MPMX20_01032 at 1088.263 kb on - strand, within MPMX20_01032 at 1088.292 kb on - strand, within MPMX20_01032 at 1088.292 kb on - strand, within MPMX20_01032 at 1088.312 kb on + strand, within MPMX20_01032 at 1088.384 kb on + strand, within MPMX20_01032 at 1088.392 kb on - strand, within MPMX20_01032 at 1088.394 kb on + strand, within MPMX20_01032 at 1088.416 kb on - strand, within MPMX20_01032 at 1088.435 kb on + strand, within MPMX20_01032 at 1088.483 kb on + strand, within MPMX20_01032 at 1088.491 kb on - strand, within MPMX20_01032 at 1088.497 kb on + strand, within MPMX20_01032 at 1088.547 kb on - strand, within MPMX20_01032 at 1088.642 kb on + strand, within MPMX20_01032 at 1088.645 kb on - strand, within MPMX20_01032 at 1088.707 kb on + strand, within MPMX20_01032 at 1088.762 kb on + strand at 1088.835 kb on + strand at 1088.840 kb on + strand at 1088.840 kb on + strand at 1088.842 kb on + strand at 1088.842 kb on + strand at 1088.848 kb on - strand at 1088.855 kb on - strand at 1089.075 kb on - strand at 1089.125 kb on - strand at 1089.125 kb on - strand at 1089.142 kb on + strand, within MPMX20_01033 at 1089.227 kb on + strand, within MPMX20_01033 at 1089.284 kb on - strand, within MPMX20_01033 at 1089.335 kb on + strand, within MPMX20_01033 at 1089.343 kb on - strand, within MPMX20_01033 at 1089.361 kb on + strand, within MPMX20_01033 at 1089.389 kb on - strand, within MPMX20_01033 at 1089.446 kb on + strand at 1089.538 kb on - strand at 1089.563 kb on - strand at 1089.563 kb on - strand at 1089.564 kb on + strand at 1089.624 kb on + strand, within MPMX20_01034 at 1089.682 kb on - strand, within MPMX20_01034 at 1089.699 kb on + strand, within MPMX20_01034 at 1089.776 kb on - strand, within MPMX20_01034 at 1089.776 kb on - strand, within MPMX20_01034 at 1089.796 kb on - strand, within MPMX20_01034 at 1089.834 kb on - strand, within MPMX20_01034 at 1089.861 kb on - strand, within MPMX20_01034 at 1089.890 kb on - strand, within MPMX20_01034 at 1089.894 kb on - strand, within MPMX20_01034 at 1089.957 kb on + strand at 1090.116 kb on + strand, within MPMX20_01035 at 1090.134 kb on + strand, within MPMX20_01035 at 1090.134 kb on + strand, within MPMX20_01035 at 1090.141 kb on + strand, within MPMX20_01035 at 1090.142 kb on - strand, within MPMX20_01035 at 1090.142 kb on - strand, within MPMX20_01035 at 1090.176 kb on - strand, within MPMX20_01035 at 1090.308 kb on - strand, within MPMX20_01035 at 1090.315 kb on - strand, within MPMX20_01035 at 1090.440 kb on + strand, within MPMX20_01035 at 1090.440 kb on + strand, within MPMX20_01035 at 1090.448 kb on - strand, within MPMX20_01035 at 1090.448 kb on - strand, within MPMX20_01035
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,088,138 + MPMX20_01032 0.57 +2.3 1,088,138 + MPMX20_01032 0.57 +0.1 1,088,146 - MPMX20_01032 0.57 -0.1 1,088,146 - MPMX20_01032 0.57 +0.6 1,088,153 + MPMX20_01032 0.58 -2.2 1,088,248 + MPMX20_01032 0.63 -0.9 1,088,263 - MPMX20_01032 0.64 -2.8 1,088,263 - MPMX20_01032 0.64 +0.5 1,088,292 - MPMX20_01032 0.65 -3.9 1,088,292 - MPMX20_01032 0.65 -2.9 1,088,312 + MPMX20_01032 0.66 -0.6 1,088,384 + MPMX20_01032 0.70 -1.8 1,088,392 - MPMX20_01032 0.70 +0.4 1,088,394 + MPMX20_01032 0.71 +1.2 1,088,416 - MPMX20_01032 0.72 -0.5 1,088,435 + MPMX20_01032 0.73 +1.9 1,088,483 + MPMX20_01032 0.75 +0.0 1,088,491 - MPMX20_01032 0.76 +0.3 1,088,497 + MPMX20_01032 0.76 -1.6 1,088,547 - MPMX20_01032 0.79 -0.1 1,088,642 + MPMX20_01032 0.84 +2.2 1,088,645 - MPMX20_01032 0.84 -1.0 1,088,707 + MPMX20_01032 0.87 -0.7 1,088,762 + +0.7 1,088,835 + -1.5 1,088,840 + +1.4 1,088,840 + -0.1 1,088,842 + +0.5 1,088,842 + -1.5 1,088,848 - +0.9 1,088,855 - +0.0 1,089,075 - -2.5 1,089,125 - +2.1 1,089,125 - +0.9 1,089,142 + MPMX20_01033 0.13 -1.1 1,089,227 + MPMX20_01033 0.35 -2.3 1,089,284 - MPMX20_01033 0.50 -2.9 1,089,335 + MPMX20_01033 0.63 -0.6 1,089,343 - MPMX20_01033 0.65 -0.2 1,089,361 + MPMX20_01033 0.70 -2.7 1,089,389 - MPMX20_01033 0.77 -0.1 1,089,446 + -0.5 1,089,538 - -3.2 1,089,563 - -0.1 1,089,563 - -0.3 1,089,564 + +0.4 1,089,624 + MPMX20_01034 0.13 +2.3 1,089,682 - MPMX20_01034 0.27 +0.3 1,089,699 + MPMX20_01034 0.31 +0.8 1,089,776 - MPMX20_01034 0.51 +1.4 1,089,776 - MPMX20_01034 0.51 +1.0 1,089,796 - MPMX20_01034 0.56 +0.0 1,089,834 - MPMX20_01034 0.65 -0.2 1,089,861 - MPMX20_01034 0.72 +0.7 1,089,890 - MPMX20_01034 0.79 -0.6 1,089,894 - MPMX20_01034 0.80 -3.1 1,089,957 + +0.7 1,090,116 + MPMX20_01035 0.12 +1.9 1,090,134 + MPMX20_01035 0.15 +0.7 1,090,134 + MPMX20_01035 0.15 +2.8 1,090,141 + MPMX20_01035 0.16 -2.0 1,090,142 - MPMX20_01035 0.16 -2.4 1,090,142 - MPMX20_01035 0.16 -1.7 1,090,176 - MPMX20_01035 0.21 -2.1 1,090,308 - MPMX20_01035 0.40 +0.1 1,090,315 - MPMX20_01035 0.41 +0.3 1,090,440 + MPMX20_01035 0.58 -2.3 1,090,440 + MPMX20_01035 0.58 +0.3 1,090,448 - MPMX20_01035 0.60 +1.3 1,090,448 - MPMX20_01035 0.60 -0.7
Or see this region's nucleotide sequence