Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00831

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00830 and MPMX20_00831 are separated by 59 nucleotidesMPMX20_00831 and MPMX20_00832 are separated by 176 nucleotidesMPMX20_00832 and MPMX20_00833 overlap by 11 nucleotides MPMX20_00830: MPMX20_00830 - Glutamyl-Q tRNA(Asp) synthetase, at 872,181 to 873,071 _00830 MPMX20_00831: MPMX20_00831 - RNA polymerase-binding transcription factor DksA, at 873,131 to 873,586 _00831 MPMX20_00832: MPMX20_00832 - Sugar fermentation stimulation protein A, at 873,763 to 874,467 _00832 MPMX20_00833: MPMX20_00833 - RNA 2',3'-cyclic phosphodiesterase, at 874,457 to 875,011 _00833 Position (kb) 873 874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 872.138 kb on - strandat 872.187 kb on - strandat 872.328 kb on + strand, within MPMX20_00830at 872.336 kb on - strand, within MPMX20_00830at 872.356 kb on + strand, within MPMX20_00830at 872.395 kb on - strand, within MPMX20_00830at 872.402 kb on - strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.492 kb on + strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.500 kb on - strand, within MPMX20_00830at 872.515 kb on - strand, within MPMX20_00830at 872.560 kb on - strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.690 kb on + strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.693 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.698 kb on - strand, within MPMX20_00830at 872.734 kb on - strand, within MPMX20_00830at 872.760 kb on + strand, within MPMX20_00830at 872.769 kb on - strand, within MPMX20_00830at 872.895 kb on + strand, within MPMX20_00830at 872.900 kb on + strand, within MPMX20_00830at 872.974 kb on - strand, within MPMX20_00830at 873.047 kb on + strandat 873.069 kb on + strandat 873.103 kb on + strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.111 kb on - strandat 873.113 kb on + strandat 873.127 kb on + strandat 873.187 kb on + strand, within MPMX20_00831at 873.188 kb on - strand, within MPMX20_00831at 873.195 kb on - strand, within MPMX20_00831at 873.329 kb on + strand, within MPMX20_00831at 873.339 kb on - strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.364 kb on + strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.470 kb on - strand, within MPMX20_00831at 873.484 kb on - strand, within MPMX20_00831at 873.486 kb on - strand, within MPMX20_00831at 873.596 kb on + strandat 873.608 kb on + strandat 873.608 kb on + strandat 873.616 kb on - strandat 873.616 kb on - strandat 873.617 kb on + strandat 873.650 kb on - strandat 873.650 kb on - strandat 873.683 kb on + strandat 873.691 kb on + strandat 873.691 kb on - strandat 873.691 kb on - strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.693 kb on + strandat 873.737 kb on - strandat 873.762 kb on - strandat 873.802 kb on - strandat 873.826 kb on + strandat 873.827 kb on + strandat 873.834 kb on + strand, within MPMX20_00832at 873.842 kb on + strand, within MPMX20_00832at 873.930 kb on - strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.937 kb on + strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.945 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.971 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.976 kb on - strand, within MPMX20_00832at 873.981 kb on - strand, within MPMX20_00832at 873.999 kb on - strand, within MPMX20_00832at 874.005 kb on + strand, within MPMX20_00832at 874.007 kb on - strand, within MPMX20_00832at 874.013 kb on - strand, within MPMX20_00832at 874.092 kb on - strand, within MPMX20_00832at 874.112 kb on - strand, within MPMX20_00832at 874.125 kb on - strand, within MPMX20_00832at 874.157 kb on + strand, within MPMX20_00832at 874.166 kb on + strand, within MPMX20_00832at 874.167 kb on + strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.175 kb on - strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.186 kb on + strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.194 kb on - strand, within MPMX20_00832at 874.244 kb on + strand, within MPMX20_00832at 874.271 kb on - strand, within MPMX20_00832at 874.313 kb on - strand, within MPMX20_00832at 874.340 kb on - strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.355 kb on + strand, within MPMX20_00832at 874.369 kb on - strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.370 kb on + strand, within MPMX20_00832at 874.374 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.378 kb on - strand, within MPMX20_00832at 874.394 kb on - strand, within MPMX20_00832at 874.404 kb on - strandat 874.434 kb on + strandat 874.480 kb on + strandat 874.510 kb on - strandat 874.528 kb on - strand, within MPMX20_00833at 874.532 kb on + strand, within MPMX20_00833at 874.540 kb on - strand, within MPMX20_00833at 874.559 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833at 874.560 kb on + strand, within MPMX20_00833

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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872,138 - -0.2
872,187 - -0.8
872,328 + MPMX20_00830 0.16 +3.2
872,336 - MPMX20_00830 0.17 -1.6
872,356 + MPMX20_00830 0.20 -1.5
872,395 - MPMX20_00830 0.24 -2.4
872,402 - MPMX20_00830 0.25 +2.2
872,492 + MPMX20_00830 0.35 -0.1
872,492 + MPMX20_00830 0.35 +0.5
872,492 + MPMX20_00830 0.35 -1.1
872,500 - MPMX20_00830 0.36 -2.0
872,500 - MPMX20_00830 0.36 -0.2
872,515 - MPMX20_00830 0.37 +1.0
872,560 - MPMX20_00830 0.43 +1.3
872,690 + MPMX20_00830 0.57 -2.6
872,690 + MPMX20_00830 0.57 +0.3
872,693 - MPMX20_00830 0.57 -2.0
872,693 - MPMX20_00830 0.57 +1.4
872,698 - MPMX20_00830 0.58 -3.0
872,698 - MPMX20_00830 0.58 +1.5
872,698 - MPMX20_00830 0.58 -1.7
872,734 - MPMX20_00830 0.62 -0.7
872,760 + MPMX20_00830 0.65 -3.4
872,769 - MPMX20_00830 0.66 +0.9
872,895 + MPMX20_00830 0.80 +0.1
872,900 + MPMX20_00830 0.81 -1.8
872,974 - MPMX20_00830 0.89 +0.8
873,047 + -0.9
873,069 + +1.6
873,103 + +0.8
873,111 - +1.0
873,111 - -1.1
873,111 - +0.5
873,113 + +0.0
873,127 + +0.1
873,187 + MPMX20_00831 0.12 -0.7
873,188 - MPMX20_00831 0.12 +0.0
873,195 - MPMX20_00831 0.14 -0.4
873,329 + MPMX20_00831 0.43 -1.3
873,339 - MPMX20_00831 0.46 -3.3
873,364 + MPMX20_00831 0.51 +0.2
873,364 + MPMX20_00831 0.51 -4.4
873,470 - MPMX20_00831 0.74 -4.5
873,470 - MPMX20_00831 0.74 -0.2
873,484 - MPMX20_00831 0.77 -3.5
873,486 - MPMX20_00831 0.78 +0.2
873,596 + +0.1
873,608 + -1.2
873,608 + -4.7
873,616 - +0.1
873,616 - -0.9
873,617 + -3.8
873,650 - +1.6
873,650 - +1.4
873,683 + +0.6
873,691 + +1.3
873,691 - -0.8
873,691 - -3.5
873,693 + -0.7
873,693 + +0.4
873,693 + +1.1
873,737 - -0.8
873,762 - +2.0
873,802 - +1.7
873,826 + +0.8
873,827 + +0.5
873,834 + MPMX20_00832 0.10 -0.8
873,842 + MPMX20_00832 0.11 -3.0
873,930 - MPMX20_00832 0.24 +1.8
873,937 + MPMX20_00832 0.25 -0.7
873,937 + MPMX20_00832 0.25 +2.3
873,937 + MPMX20_00832 0.25 +0.4
873,945 - MPMX20_00832 0.26 -3.0
873,945 - MPMX20_00832 0.26 +1.1
873,945 - MPMX20_00832 0.26 -1.1
873,945 - MPMX20_00832 0.26 -0.9
873,945 - MPMX20_00832 0.26 +0.8
873,945 - MPMX20_00832 0.26 +0.0
873,971 - MPMX20_00832 0.30 -0.4
873,971 - MPMX20_00832 0.30 +0.8
873,971 - MPMX20_00832 0.30 -1.6
873,976 - MPMX20_00832 0.30 +0.5
873,976 - MPMX20_00832 0.30 -1.4
873,981 - MPMX20_00832 0.31 +0.4
873,999 - MPMX20_00832 0.33 +0.6
874,005 + MPMX20_00832 0.34 +1.1
874,007 - MPMX20_00832 0.35 +0.7
874,013 - MPMX20_00832 0.35 +1.5
874,092 - MPMX20_00832 0.47 +2.2
874,112 - MPMX20_00832 0.50 +0.8
874,125 - MPMX20_00832 0.51 +0.9
874,157 + MPMX20_00832 0.56 -0.7
874,166 + MPMX20_00832 0.57 +0.3
874,167 + MPMX20_00832 0.57 -0.1
874,175 - MPMX20_00832 0.58 +1.5
874,175 - MPMX20_00832 0.58 -2.0
874,175 - MPMX20_00832 0.58 -1.8
874,186 + MPMX20_00832 0.60 -1.4
874,186 + MPMX20_00832 0.60 +0.5
874,194 - MPMX20_00832 0.61 -0.7
874,194 - MPMX20_00832 0.61 +0.2
874,194 - MPMX20_00832 0.61 -2.6
874,194 - MPMX20_00832 0.61 -0.5
874,244 + MPMX20_00832 0.68 -2.2
874,271 - MPMX20_00832 0.72 -1.3
874,313 - MPMX20_00832 0.78 -2.0
874,340 - MPMX20_00832 0.82 -3.4
874,355 + MPMX20_00832 0.84 -3.3
874,355 + MPMX20_00832 0.84 -2.7
874,369 - MPMX20_00832 0.86 -0.5
874,370 + MPMX20_00832 0.86 -1.4
874,370 + MPMX20_00832 0.86 +2.1
874,374 - MPMX20_00832 0.87 +0.4
874,378 - MPMX20_00832 0.87 +1.3
874,378 - MPMX20_00832 0.87 +2.6
874,394 - MPMX20_00832 0.90 +3.1
874,404 - +2.1
874,434 + +0.7
874,480 + +0.9
874,510 - +0.5
874,528 - MPMX20_00833 0.13 -4.5
874,532 + MPMX20_00833 0.14 +3.5
874,540 - MPMX20_00833 0.15 -1.4
874,559 + MPMX20_00833 0.18 +0.0
874,560 + MPMX20_00833 0.19 +1.2
874,560 + MPMX20_00833 0.19 -3.1

Or see this region's nucleotide sequence