Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04259

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04257 and MPMX20_04258 are separated by 30 nucleotidesMPMX20_04258 and MPMX20_04259 are separated by 66 nucleotidesMPMX20_04259 and MPMX20_04260 are separated by 311 nucleotides MPMX20_04257: MPMX20_04257 - hypothetical protein, at 4,440,102 to 4,440,320 _04257 MPMX20_04258: MPMX20_04258 - Phosphoribulokinase, plasmid, at 4,440,351 to 4,441,220 _04258 MPMX20_04259: MPMX20_04259 - Protein YhfA, at 4,441,287 to 4,441,691 _04259 MPMX20_04260: MPMX20_04260 - cAMP-activated global transcriptional regulator CRP, at 4,442,003 to 4,442,635 _04260 Position (kb) 4441 4442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4440.329 kb on - strandat 4440.384 kb on + strandat 4440.464 kb on + strand, within MPMX20_04258at 4440.514 kb on - strand, within MPMX20_04258at 4440.536 kb on + strand, within MPMX20_04258at 4440.536 kb on + strand, within MPMX20_04258at 4440.582 kb on - strand, within MPMX20_04258at 4440.647 kb on + strand, within MPMX20_04258at 4440.688 kb on + strand, within MPMX20_04258at 4440.696 kb on - strand, within MPMX20_04258at 4440.696 kb on - strand, within MPMX20_04258at 4440.696 kb on - strand, within MPMX20_04258at 4440.741 kb on + strand, within MPMX20_04258at 4440.741 kb on + strand, within MPMX20_04258at 4440.741 kb on + strand, within MPMX20_04258at 4440.741 kb on + strand, within MPMX20_04258at 4440.835 kb on + strand, within MPMX20_04258at 4440.915 kb on - strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.988 kb on + strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4440.996 kb on - strand, within MPMX20_04258at 4441.041 kb on - strand, within MPMX20_04258at 4441.075 kb on + strand, within MPMX20_04258at 4441.102 kb on - strand, within MPMX20_04258at 4441.134 kb on - strandat 4441.221 kb on + strandat 4441.243 kb on - strandat 4441.245 kb on + strandat 4441.248 kb on - strandat 4441.255 kb on - strandat 4441.255 kb on - strandat 4441.259 kb on + strandat 4441.267 kb on - strandat 4441.338 kb on + strand, within MPMX20_04259at 4441.371 kb on + strand, within MPMX20_04259at 4441.406 kb on + strand, within MPMX20_04259at 4441.459 kb on - strand, within MPMX20_04259at 4441.465 kb on - strand, within MPMX20_04259at 4441.472 kb on + strand, within MPMX20_04259at 4441.538 kb on + strand, within MPMX20_04259at 4441.551 kb on + strand, within MPMX20_04259at 4441.569 kb on - strand, within MPMX20_04259at 4441.656 kb on + strandat 4441.656 kb on + strandat 4441.664 kb on + strandat 4441.672 kb on - strandat 4441.775 kb on - strandat 4441.836 kb on + strandat 4441.836 kb on + strandat 4441.836 kb on + strandat 4441.941 kb on + strandat 4441.972 kb on + strandat 4441.979 kb on + strandat 4441.979 kb on + strandat 4441.981 kb on + strandat 4441.991 kb on + strandat 4442.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,440,329 - -2.3
4,440,384 + -0.6
4,440,464 + MPMX20_04258 0.13 -1.1
4,440,514 - MPMX20_04258 0.19 -0.8
4,440,536 + MPMX20_04258 0.21 -2.6
4,440,536 + MPMX20_04258 0.21 -0.0
4,440,582 - MPMX20_04258 0.27 -0.1
4,440,647 + MPMX20_04258 0.34 +0.8
4,440,688 + MPMX20_04258 0.39 +1.4
4,440,696 - MPMX20_04258 0.40 -0.7
4,440,696 - MPMX20_04258 0.40 +1.4
4,440,696 - MPMX20_04258 0.40 -1.4
4,440,741 + MPMX20_04258 0.45 -1.0
4,440,741 + MPMX20_04258 0.45 +0.3
4,440,741 + MPMX20_04258 0.45 -1.0
4,440,741 + MPMX20_04258 0.45 -0.6
4,440,835 + MPMX20_04258 0.56 -0.9
4,440,915 - MPMX20_04258 0.65 +0.7
4,440,988 + MPMX20_04258 0.73 -1.6
4,440,988 + MPMX20_04258 0.73 +0.3
4,440,988 + MPMX20_04258 0.73 +0.5
4,440,988 + MPMX20_04258 0.73 +2.1
4,440,988 + MPMX20_04258 0.73 -0.4
4,440,988 + MPMX20_04258 0.73 -3.6
4,440,988 + MPMX20_04258 0.73 -0.9
4,440,988 + MPMX20_04258 0.73 +0.9
4,440,988 + MPMX20_04258 0.73 -1.5
4,440,988 + MPMX20_04258 0.73 +0.3
4,440,988 + MPMX20_04258 0.73 -0.4
4,440,988 + MPMX20_04258 0.73 +0.4
4,440,988 + MPMX20_04258 0.73 -1.2
4,440,988 + MPMX20_04258 0.73 +0.2
4,440,988 + MPMX20_04258 0.73 -0.3
4,440,988 + MPMX20_04258 0.73 +0.7
4,440,988 + MPMX20_04258 0.73 -0.9
4,440,988 + MPMX20_04258 0.73 -1.0
4,440,988 + MPMX20_04258 0.73 +0.8
4,440,988 + MPMX20_04258 0.73 -1.8
4,440,988 + MPMX20_04258 0.73 -0.2
4,440,988 + MPMX20_04258 0.73 +0.3
4,440,988 + MPMX20_04258 0.73 -1.3
4,440,988 + MPMX20_04258 0.73 -1.1
4,440,988 + MPMX20_04258 0.73 -0.9
4,440,988 + MPMX20_04258 0.73 -0.4
4,440,988 + MPMX20_04258 0.73 +0.8
4,440,988 + MPMX20_04258 0.73 -0.9
4,440,988 + MPMX20_04258 0.73 -0.2
4,440,996 - MPMX20_04258 0.74 -0.6
4,440,996 - MPMX20_04258 0.74 +0.3
4,440,996 - MPMX20_04258 0.74 +0.3
4,440,996 - MPMX20_04258 0.74 -1.0
4,440,996 - MPMX20_04258 0.74 -1.4
4,440,996 - MPMX20_04258 0.74 -0.6
4,440,996 - MPMX20_04258 0.74 -0.8
4,440,996 - MPMX20_04258 0.74 -0.3
4,440,996 - MPMX20_04258 0.74 -0.4
4,440,996 - MPMX20_04258 0.74 -0.3
4,440,996 - MPMX20_04258 0.74 +0.1
4,440,996 - MPMX20_04258 0.74 -0.1
4,440,996 - MPMX20_04258 0.74 -1.2
4,440,996 - MPMX20_04258 0.74 -0.9
4,440,996 - MPMX20_04258 0.74 +1.0
4,440,996 - MPMX20_04258 0.74 -2.2
4,440,996 - MPMX20_04258 0.74 +0.8
4,441,041 - MPMX20_04258 0.79 -1.1
4,441,075 + MPMX20_04258 0.83 -0.1
4,441,102 - MPMX20_04258 0.86 +0.8
4,441,134 - +0.5
4,441,221 + +0.6
4,441,243 - +0.3
4,441,245 + -0.1
4,441,248 - -0.1
4,441,255 - +0.6
4,441,255 - +0.1
4,441,259 + -0.4
4,441,267 - -0.0
4,441,338 + MPMX20_04259 0.13 -0.3
4,441,371 + MPMX20_04259 0.21 +0.4
4,441,406 + MPMX20_04259 0.29 -1.1
4,441,459 - MPMX20_04259 0.42 +0.0
4,441,465 - MPMX20_04259 0.44 +2.5
4,441,472 + MPMX20_04259 0.46 -1.1
4,441,538 + MPMX20_04259 0.62 +0.9
4,441,551 + MPMX20_04259 0.65 -0.5
4,441,569 - MPMX20_04259 0.70 +0.1
4,441,656 + +0.2
4,441,656 + -2.7
4,441,664 + -0.8
4,441,672 - -0.2
4,441,775 - -0.2
4,441,836 + -1.1
4,441,836 + -0.5
4,441,836 + -0.2
4,441,941 + +0.8
4,441,972 + -2.0
4,441,979 + -1.3
4,441,979 + -2.0
4,441,981 + -1.6
4,441,991 + -1.5
4,442,672 - +2.4

Or see this region's nucleotide sequence