Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03447 and MPMX20_03448 are separated by 53 nucleotides MPMX20_03448 and MPMX20_03449 are separated by 314 nucleotides
MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936
_03447
MPMX20_03448: MPMX20_03448 - Autonomous glycyl radical cofactor, at 3,635,990 to 3,636,373
_03448
MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377
_03449
Position (kb)
3635
3636
3637 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3635.086 kb on + strand, within MPMX20_03447 at 3635.122 kb on - strand, within MPMX20_03447 at 3635.133 kb on + strand, within MPMX20_03447 at 3635.146 kb on + strand, within MPMX20_03447 at 3635.173 kb on - strand, within MPMX20_03447 at 3635.184 kb on - strand, within MPMX20_03447 at 3635.184 kb on - strand, within MPMX20_03447 at 3635.299 kb on + strand, within MPMX20_03447 at 3635.299 kb on + strand, within MPMX20_03447 at 3635.360 kb on - strand, within MPMX20_03447 at 3635.440 kb on - strand, within MPMX20_03447 at 3635.513 kb on + strand, within MPMX20_03447 at 3635.526 kb on - strand, within MPMX20_03447 at 3635.609 kb on - strand, within MPMX20_03447 at 3635.611 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.755 kb on + strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.763 kb on - strand, within MPMX20_03447 at 3635.988 kb on + strand at 3635.988 kb on + strand at 3635.996 kb on - strand at 3635.997 kb on - strand at 3636.009 kb on - strand at 3636.036 kb on + strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.042 kb on - strand, within MPMX20_03448 at 3636.058 kb on - strand, within MPMX20_03448 at 3636.066 kb on - strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.083 kb on + strand, within MPMX20_03448 at 3636.176 kb on - strand, within MPMX20_03448 at 3636.274 kb on + strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.282 kb on - strand, within MPMX20_03448 at 3636.321 kb on + strand, within MPMX20_03448 at 3636.372 kb on - strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.383 kb on + strand at 3636.391 kb on - strand at 3636.393 kb on + strand at 3636.401 kb on - strand at 3636.401 kb on - strand at 3636.648 kb on + strand at 3636.655 kb on - strand at 3636.659 kb on + strand at 3636.755 kb on - strand at 3636.790 kb on - strand, within MPMX20_03449 at 3636.934 kb on - strand, within MPMX20_03449 at 3636.935 kb on + strand, within MPMX20_03449 at 3636.992 kb on + strand, within MPMX20_03449 at 3637.000 kb on - strand, within MPMX20_03449 at 3637.015 kb on - strand, within MPMX20_03449 at 3637.067 kb on - strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.099 kb on + strand, within MPMX20_03449 at 3637.233 kb on + strand, within MPMX20_03449 at 3637.241 kb on - strand, within MPMX20_03449 at 3637.370 kb on - strand at 3637.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 3,635,086 + MPMX20_03447 0.36 -0.3 3,635,122 - MPMX20_03447 0.39 -1.1 3,635,133 + MPMX20_03447 0.40 -0.5 3,635,146 + MPMX20_03447 0.40 -1.1 3,635,173 - MPMX20_03447 0.43 +0.9 3,635,184 - MPMX20_03447 0.43 -0.2 3,635,184 - MPMX20_03447 0.43 -2.0 3,635,299 + MPMX20_03447 0.52 -1.1 3,635,299 + MPMX20_03447 0.52 -1.6 3,635,360 - MPMX20_03447 0.57 +0.5 3,635,440 - MPMX20_03447 0.63 -0.4 3,635,513 + MPMX20_03447 0.68 -1.7 3,635,526 - MPMX20_03447 0.69 +0.4 3,635,609 - MPMX20_03447 0.75 -0.6 3,635,611 + MPMX20_03447 0.75 -1.1 3,635,755 + MPMX20_03447 0.86 +0.3 3,635,755 + MPMX20_03447 0.86 +1.3 3,635,755 + MPMX20_03447 0.86 -0.7 3,635,755 + MPMX20_03447 0.86 +0.0 3,635,755 + MPMX20_03447 0.86 -2.3 3,635,755 + MPMX20_03447 0.86 +2.4 3,635,755 + MPMX20_03447 0.86 +1.0 3,635,755 + MPMX20_03447 0.86 -1.0 3,635,763 - MPMX20_03447 0.87 +0.4 3,635,763 - MPMX20_03447 0.87 -1.2 3,635,763 - MPMX20_03447 0.87 -0.7 3,635,988 + -1.0 3,635,988 + -0.7 3,635,996 - +0.5 3,635,997 - -0.3 3,636,009 - +1.2 3,636,036 + MPMX20_03448 0.12 -0.8 3,636,042 - MPMX20_03448 0.14 -0.4 3,636,042 - MPMX20_03448 0.14 -0.7 3,636,058 - MPMX20_03448 0.18 -2.6 3,636,066 - MPMX20_03448 0.20 +2.0 3,636,083 + MPMX20_03448 0.24 +0.9 3,636,083 + MPMX20_03448 0.24 -0.6 3,636,176 - MPMX20_03448 0.48 +0.2 3,636,274 + MPMX20_03448 0.74 -0.8 3,636,282 - MPMX20_03448 0.76 +3.1 3,636,282 - MPMX20_03448 0.76 +0.1 3,636,321 + MPMX20_03448 0.86 -1.0 3,636,372 - -1.1 3,636,383 + +0.6 3,636,383 + +2.3 3,636,383 + +1.4 3,636,391 - +0.4 3,636,393 + -0.6 3,636,401 - +0.8 3,636,401 - +0.0 3,636,648 + +0.2 3,636,655 - +1.0 3,636,659 + +0.4 3,636,755 - -0.3 3,636,790 - MPMX20_03449 0.15 +0.5 3,636,934 - MPMX20_03449 0.36 +0.9 3,636,935 + MPMX20_03449 0.36 +0.6 3,636,992 + MPMX20_03449 0.44 +0.2 3,637,000 - MPMX20_03449 0.45 +1.7 3,637,015 - MPMX20_03449 0.47 +1.2 3,637,067 - MPMX20_03449 0.55 +0.5 3,637,099 + MPMX20_03449 0.60 +0.2 3,637,099 + MPMX20_03449 0.60 -0.1 3,637,099 + MPMX20_03449 0.60 +0.5 3,637,233 + MPMX20_03449 0.79 +0.2 3,637,241 - MPMX20_03449 0.80 -0.1 3,637,370 - -0.1 3,637,372 + -0.3
Or see this region's nucleotide sequence