Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03448

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03447 and MPMX20_03448 are separated by 53 nucleotidesMPMX20_03448 and MPMX20_03449 are separated by 314 nucleotides MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936 _03447 MPMX20_03448: MPMX20_03448 - Autonomous glycyl radical cofactor, at 3,635,990 to 3,636,373 _03448 MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377 _03449 Position (kb) 3635 3636 3637Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3635.086 kb on + strand, within MPMX20_03447at 3635.122 kb on - strand, within MPMX20_03447at 3635.133 kb on + strand, within MPMX20_03447at 3635.146 kb on + strand, within MPMX20_03447at 3635.173 kb on - strand, within MPMX20_03447at 3635.184 kb on - strand, within MPMX20_03447at 3635.184 kb on - strand, within MPMX20_03447at 3635.299 kb on + strand, within MPMX20_03447at 3635.299 kb on + strand, within MPMX20_03447at 3635.360 kb on - strand, within MPMX20_03447at 3635.440 kb on - strand, within MPMX20_03447at 3635.513 kb on + strand, within MPMX20_03447at 3635.526 kb on - strand, within MPMX20_03447at 3635.609 kb on - strand, within MPMX20_03447at 3635.611 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.988 kb on + strandat 3635.988 kb on + strandat 3635.996 kb on - strandat 3635.997 kb on - strandat 3636.009 kb on - strandat 3636.036 kb on + strand, within MPMX20_03448at 3636.042 kb on - strand, within MPMX20_03448at 3636.042 kb on - strand, within MPMX20_03448at 3636.058 kb on - strand, within MPMX20_03448at 3636.066 kb on - strand, within MPMX20_03448at 3636.083 kb on + strand, within MPMX20_03448at 3636.083 kb on + strand, within MPMX20_03448at 3636.176 kb on - strand, within MPMX20_03448at 3636.274 kb on + strand, within MPMX20_03448at 3636.282 kb on - strand, within MPMX20_03448at 3636.282 kb on - strand, within MPMX20_03448at 3636.321 kb on + strand, within MPMX20_03448at 3636.372 kb on - strandat 3636.383 kb on + strandat 3636.383 kb on + strandat 3636.383 kb on + strandat 3636.391 kb on - strandat 3636.393 kb on + strandat 3636.401 kb on - strandat 3636.401 kb on - strandat 3636.648 kb on + strandat 3636.655 kb on - strandat 3636.659 kb on + strandat 3636.755 kb on - strandat 3636.790 kb on - strand, within MPMX20_03449at 3636.934 kb on - strand, within MPMX20_03449at 3636.935 kb on + strand, within MPMX20_03449at 3636.992 kb on + strand, within MPMX20_03449at 3637.000 kb on - strand, within MPMX20_03449at 3637.015 kb on - strand, within MPMX20_03449at 3637.067 kb on - strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.099 kb on + strand, within MPMX20_03449at 3637.233 kb on + strand, within MPMX20_03449at 3637.241 kb on - strand, within MPMX20_03449at 3637.370 kb on - strandat 3637.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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3,635,086 + MPMX20_03447 0.36 -0.3
3,635,122 - MPMX20_03447 0.39 -1.1
3,635,133 + MPMX20_03447 0.40 -0.5
3,635,146 + MPMX20_03447 0.40 -1.1
3,635,173 - MPMX20_03447 0.43 +0.9
3,635,184 - MPMX20_03447 0.43 -0.2
3,635,184 - MPMX20_03447 0.43 -2.0
3,635,299 + MPMX20_03447 0.52 -1.1
3,635,299 + MPMX20_03447 0.52 -1.6
3,635,360 - MPMX20_03447 0.57 +0.5
3,635,440 - MPMX20_03447 0.63 -0.4
3,635,513 + MPMX20_03447 0.68 -1.7
3,635,526 - MPMX20_03447 0.69 +0.4
3,635,609 - MPMX20_03447 0.75 -0.6
3,635,611 + MPMX20_03447 0.75 -1.1
3,635,755 + MPMX20_03447 0.86 +0.3
3,635,755 + MPMX20_03447 0.86 +1.3
3,635,755 + MPMX20_03447 0.86 -0.7
3,635,755 + MPMX20_03447 0.86 +0.0
3,635,755 + MPMX20_03447 0.86 -2.3
3,635,755 + MPMX20_03447 0.86 +2.4
3,635,755 + MPMX20_03447 0.86 +1.0
3,635,755 + MPMX20_03447 0.86 -1.0
3,635,763 - MPMX20_03447 0.87 +0.4
3,635,763 - MPMX20_03447 0.87 -1.2
3,635,763 - MPMX20_03447 0.87 -0.7
3,635,988 + -1.0
3,635,988 + -0.7
3,635,996 - +0.5
3,635,997 - -0.3
3,636,009 - +1.2
3,636,036 + MPMX20_03448 0.12 -0.8
3,636,042 - MPMX20_03448 0.14 -0.4
3,636,042 - MPMX20_03448 0.14 -0.7
3,636,058 - MPMX20_03448 0.18 -2.6
3,636,066 - MPMX20_03448 0.20 +2.0
3,636,083 + MPMX20_03448 0.24 +0.9
3,636,083 + MPMX20_03448 0.24 -0.6
3,636,176 - MPMX20_03448 0.48 +0.2
3,636,274 + MPMX20_03448 0.74 -0.8
3,636,282 - MPMX20_03448 0.76 +3.1
3,636,282 - MPMX20_03448 0.76 +0.1
3,636,321 + MPMX20_03448 0.86 -1.0
3,636,372 - -1.1
3,636,383 + +0.6
3,636,383 + +2.3
3,636,383 + +1.4
3,636,391 - +0.4
3,636,393 + -0.6
3,636,401 - +0.8
3,636,401 - +0.0
3,636,648 + +0.2
3,636,655 - +1.0
3,636,659 + +0.4
3,636,755 - -0.3
3,636,790 - MPMX20_03449 0.15 +0.5
3,636,934 - MPMX20_03449 0.36 +0.9
3,636,935 + MPMX20_03449 0.36 +0.6
3,636,992 + MPMX20_03449 0.44 +0.2
3,637,000 - MPMX20_03449 0.45 +1.7
3,637,015 - MPMX20_03449 0.47 +1.2
3,637,067 - MPMX20_03449 0.55 +0.5
3,637,099 + MPMX20_03449 0.60 +0.2
3,637,099 + MPMX20_03449 0.60 -0.1
3,637,099 + MPMX20_03449 0.60 +0.5
3,637,233 + MPMX20_03449 0.79 +0.2
3,637,241 - MPMX20_03449 0.80 -0.1
3,637,370 - -0.1
3,637,372 + -0.3

Or see this region's nucleotide sequence