Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03100 and MPMX20_03101 are separated by 189 nucleotides MPMX20_03101 and MPMX20_03102 are separated by 111 nucleotides MPMX20_03102 and MPMX20_03103 are separated by 66 nucleotides
MPMX20_03100: MPMX20_03100 - Beta-xylosidase, at 3,252,299 to 3,254,596
_03100
MPMX20_03101: MPMX20_03101 - Quinone-dependent D-lactate dehydrogenase, at 3,254,786 to 3,256,534
_03101
MPMX20_03102: MPMX20_03102 - Phosphinothricin N-acetyltransferase, at 3,256,646 to 3,257,200
_03102
MPMX20_03103: MPMX20_03103 - D-alanyl-D-alanine endopeptidase, at 3,257,267 to 3,258,190
_03103
Position (kb)
3254
3255
3256
3257 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3253.842 kb on - strand, within MPMX20_03100 at 3253.872 kb on + strand, within MPMX20_03100 at 3253.880 kb on - strand, within MPMX20_03100 at 3253.928 kb on + strand, within MPMX20_03100 at 3253.928 kb on + strand, within MPMX20_03100 at 3253.928 kb on + strand, within MPMX20_03100 at 3253.936 kb on + strand, within MPMX20_03100 at 3253.936 kb on - strand, within MPMX20_03100 at 3253.953 kb on + strand, within MPMX20_03100 at 3253.972 kb on + strand, within MPMX20_03100 at 3254.004 kb on + strand, within MPMX20_03100 at 3254.012 kb on - strand, within MPMX20_03100 at 3254.080 kb on + strand, within MPMX20_03100 at 3254.080 kb on + strand, within MPMX20_03100 at 3254.088 kb on - strand, within MPMX20_03100 at 3254.088 kb on - strand, within MPMX20_03100 at 3254.104 kb on + strand, within MPMX20_03100 at 3254.221 kb on + strand, within MPMX20_03100 at 3254.251 kb on + strand, within MPMX20_03100 at 3254.271 kb on + strand, within MPMX20_03100 at 3254.332 kb on + strand, within MPMX20_03100 at 3254.351 kb on + strand, within MPMX20_03100 at 3254.376 kb on + strand at 3254.376 kb on + strand at 3254.384 kb on - strand at 3254.401 kb on + strand at 3254.426 kb on + strand at 3254.479 kb on - strand at 3254.508 kb on - strand at 3254.562 kb on - strand at 3254.600 kb on + strand at 3254.731 kb on + strand at 3254.743 kb on + strand at 3254.745 kb on + strand at 3254.745 kb on + strand at 3254.753 kb on - strand at 3254.770 kb on + strand at 3254.777 kb on - strand at 3254.804 kb on + strand at 3254.806 kb on + strand at 3254.842 kb on + strand at 3254.850 kb on + strand at 3254.850 kb on + strand at 3254.858 kb on - strand at 3254.858 kb on - strand at 3254.909 kb on + strand at 3254.917 kb on - strand at 3255.036 kb on + strand, within MPMX20_03101 at 3255.036 kb on + strand, within MPMX20_03101 at 3255.162 kb on - strand, within MPMX20_03101 at 3255.220 kb on - strand, within MPMX20_03101 at 3255.280 kb on + strand, within MPMX20_03101 at 3255.283 kb on - strand, within MPMX20_03101 at 3255.289 kb on + strand, within MPMX20_03101 at 3255.297 kb on - strand, within MPMX20_03101 at 3255.388 kb on + strand, within MPMX20_03101 at 3255.463 kb on + strand, within MPMX20_03101 at 3255.509 kb on - strand, within MPMX20_03101 at 3255.591 kb on - strand, within MPMX20_03101 at 3255.625 kb on - strand, within MPMX20_03101 at 3255.681 kb on + strand, within MPMX20_03101 at 3255.691 kb on + strand, within MPMX20_03101 at 3255.778 kb on + strand, within MPMX20_03101 at 3255.786 kb on - strand, within MPMX20_03101 at 3255.853 kb on + strand, within MPMX20_03101 at 3255.853 kb on + strand, within MPMX20_03101 at 3255.925 kb on + strand, within MPMX20_03101 at 3255.951 kb on + strand, within MPMX20_03101 at 3255.995 kb on + strand, within MPMX20_03101 at 3255.995 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.053 kb on + strand, within MPMX20_03101 at 3256.061 kb on - strand, within MPMX20_03101 at 3256.061 kb on - strand, within MPMX20_03101 at 3256.061 kb on - strand, within MPMX20_03101 at 3256.061 kb on - strand, within MPMX20_03101 at 3256.061 kb on - strand, within MPMX20_03101 at 3256.079 kb on + strand, within MPMX20_03101 at 3256.159 kb on + strand, within MPMX20_03101 at 3256.159 kb on + strand, within MPMX20_03101 at 3256.191 kb on + strand, within MPMX20_03101 at 3256.276 kb on + strand, within MPMX20_03101 at 3256.276 kb on + strand, within MPMX20_03101 at 3256.276 kb on + strand, within MPMX20_03101 at 3256.284 kb on - strand, within MPMX20_03101 at 3256.284 kb on - strand, within MPMX20_03101 at 3256.311 kb on + strand, within MPMX20_03101 at 3256.329 kb on - strand, within MPMX20_03101 at 3256.369 kb on + strand at 3256.395 kb on - strand at 3256.404 kb on + strand at 3256.443 kb on + strand at 3256.443 kb on + strand at 3256.450 kb on + strand at 3256.494 kb on + strand at 3256.505 kb on + strand at 3256.513 kb on - strand at 3256.578 kb on - strand at 3256.584 kb on + strand at 3256.584 kb on + strand at 3256.587 kb on - strand at 3256.625 kb on + strand at 3256.625 kb on + strand at 3256.625 kb on + strand at 3256.689 kb on + strand at 3256.862 kb on + strand, within MPMX20_03102 at 3256.876 kb on - strand, within MPMX20_03102 at 3256.876 kb on - strand, within MPMX20_03102 at 3256.876 kb on - strand, within MPMX20_03102 at 3256.885 kb on + strand, within MPMX20_03102 at 3256.909 kb on + strand, within MPMX20_03102 at 3256.917 kb on + strand, within MPMX20_03102 at 3256.917 kb on - strand, within MPMX20_03102 at 3256.917 kb on - strand, within MPMX20_03102 at 3257.072 kb on - strand, within MPMX20_03102 at 3257.115 kb on + strand, within MPMX20_03102 at 3257.170 kb on + strand at 3257.203 kb on - strand at 3257.203 kb on - strand at 3257.219 kb on - strand at 3257.224 kb on - strand at 3257.252 kb on + strand at 3257.283 kb on + strand at 3257.283 kb on + strand at 3257.291 kb on - strand at 3257.323 kb on - strand at 3257.336 kb on + strand at 3257.350 kb on - strand at 3257.383 kb on - strand, within MPMX20_03103 at 3257.419 kb on + strand, within MPMX20_03103 at 3257.423 kb on - strand, within MPMX20_03103 at 3257.458 kb on + strand, within MPMX20_03103 at 3257.458 kb on + strand, within MPMX20_03103 at 3257.466 kb on - strand, within MPMX20_03103 at 3257.468 kb on + strand, within MPMX20_03103 at 3257.476 kb on - strand, within MPMX20_03103 at 3257.528 kb on - strand, within MPMX20_03103
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 3,253,842 - MPMX20_03100 0.67 -1.5 3,253,872 + MPMX20_03100 0.68 +0.6 3,253,880 - MPMX20_03100 0.69 -2.5 3,253,928 + MPMX20_03100 0.71 -0.7 3,253,928 + MPMX20_03100 0.71 -0.2 3,253,928 + MPMX20_03100 0.71 -0.9 3,253,936 + MPMX20_03100 0.71 +1.1 3,253,936 - MPMX20_03100 0.71 -0.7 3,253,953 + MPMX20_03100 0.72 +0.2 3,253,972 + MPMX20_03100 0.73 -0.6 3,254,004 + MPMX20_03100 0.74 -0.4 3,254,012 - MPMX20_03100 0.75 -0.9 3,254,080 + MPMX20_03100 0.78 -0.8 3,254,080 + MPMX20_03100 0.78 -0.4 3,254,088 - MPMX20_03100 0.78 +0.2 3,254,088 - MPMX20_03100 0.78 -0.4 3,254,104 + MPMX20_03100 0.79 -0.4 3,254,221 + MPMX20_03100 0.84 +0.1 3,254,251 + MPMX20_03100 0.85 -0.2 3,254,271 + MPMX20_03100 0.86 -0.7 3,254,332 + MPMX20_03100 0.88 -0.2 3,254,351 + MPMX20_03100 0.89 +0.2 3,254,376 + -0.5 3,254,376 + -0.4 3,254,384 - +0.1 3,254,401 + -1.2 3,254,426 + -0.3 3,254,479 - +0.6 3,254,508 - +0.0 3,254,562 - +0.7 3,254,600 + -0.2 3,254,731 + +1.1 3,254,743 + -0.1 3,254,745 + -0.8 3,254,745 + -0.6 3,254,753 - -0.5 3,254,770 + -0.6 3,254,777 - -0.1 3,254,804 + +0.1 3,254,806 + -2.6 3,254,842 + +0.1 3,254,850 + -1.7 3,254,850 + +0.1 3,254,858 - -1.8 3,254,858 - +0.5 3,254,909 + +1.1 3,254,917 - -0.1 3,255,036 + MPMX20_03101 0.14 -0.7 3,255,036 + MPMX20_03101 0.14 +0.5 3,255,162 - MPMX20_03101 0.21 -1.6 3,255,220 - MPMX20_03101 0.25 -0.3 3,255,280 + MPMX20_03101 0.28 -1.3 3,255,283 - MPMX20_03101 0.28 -0.9 3,255,289 + MPMX20_03101 0.29 -0.2 3,255,297 - MPMX20_03101 0.29 +0.5 3,255,388 + MPMX20_03101 0.34 -0.1 3,255,463 + MPMX20_03101 0.39 +0.5 3,255,509 - MPMX20_03101 0.41 +0.3 3,255,591 - MPMX20_03101 0.46 -0.5 3,255,625 - MPMX20_03101 0.48 +1.9 3,255,681 + MPMX20_03101 0.51 -0.2 3,255,691 + MPMX20_03101 0.52 +2.6 3,255,778 + MPMX20_03101 0.57 -0.8 3,255,786 - MPMX20_03101 0.57 +1.1 3,255,853 + MPMX20_03101 0.61 +0.1 3,255,853 + MPMX20_03101 0.61 +1.7 3,255,925 + MPMX20_03101 0.65 +1.1 3,255,951 + MPMX20_03101 0.67 -1.5 3,255,995 + MPMX20_03101 0.69 -1.0 3,255,995 + MPMX20_03101 0.69 -0.6 3,256,053 + MPMX20_03101 0.72 +0.3 3,256,053 + MPMX20_03101 0.72 -0.7 3,256,053 + MPMX20_03101 0.72 +0.1 3,256,053 + MPMX20_03101 0.72 -0.5 3,256,053 + MPMX20_03101 0.72 -0.8 3,256,053 + MPMX20_03101 0.72 +0.4 3,256,061 - MPMX20_03101 0.73 -0.5 3,256,061 - MPMX20_03101 0.73 -2.6 3,256,061 - MPMX20_03101 0.73 +0.1 3,256,061 - MPMX20_03101 0.73 -0.1 3,256,061 - MPMX20_03101 0.73 +1.1 3,256,079 + MPMX20_03101 0.74 -0.4 3,256,159 + MPMX20_03101 0.79 +0.0 3,256,159 + MPMX20_03101 0.79 -0.3 3,256,191 + MPMX20_03101 0.80 +2.1 3,256,276 + MPMX20_03101 0.85 -0.4 3,256,276 + MPMX20_03101 0.85 +0.1 3,256,276 + MPMX20_03101 0.85 -1.5 3,256,284 - MPMX20_03101 0.86 -0.8 3,256,284 - MPMX20_03101 0.86 -0.2 3,256,311 + MPMX20_03101 0.87 +0.5 3,256,329 - MPMX20_03101 0.88 -1.6 3,256,369 + -0.9 3,256,395 - -0.6 3,256,404 + -0.6 3,256,443 + +0.8 3,256,443 + +0.7 3,256,450 + -0.3 3,256,494 + +0.6 3,256,505 + -1.1 3,256,513 - -0.1 3,256,578 - -0.5 3,256,584 + +0.7 3,256,584 + +0.1 3,256,587 - +0.5 3,256,625 + -1.0 3,256,625 + -0.0 3,256,625 + -0.3 3,256,689 + +0.6 3,256,862 + MPMX20_03102 0.39 +0.1 3,256,876 - MPMX20_03102 0.41 +0.7 3,256,876 - MPMX20_03102 0.41 +0.4 3,256,876 - MPMX20_03102 0.41 -0.2 3,256,885 + MPMX20_03102 0.43 +0.4 3,256,909 + MPMX20_03102 0.47 -0.4 3,256,917 + MPMX20_03102 0.49 +0.1 3,256,917 - MPMX20_03102 0.49 -0.0 3,256,917 - MPMX20_03102 0.49 -1.2 3,257,072 - MPMX20_03102 0.77 +0.4 3,257,115 + MPMX20_03102 0.85 +0.3 3,257,170 + -0.1 3,257,203 - +0.3 3,257,203 - +3.9 3,257,219 - -0.2 3,257,224 - -0.7 3,257,252 + -0.6 3,257,283 + -0.9 3,257,283 + -1.0 3,257,291 - +0.1 3,257,323 - -1.3 3,257,336 + -0.0 3,257,350 - +2.0 3,257,383 - MPMX20_03103 0.13 +0.8 3,257,419 + MPMX20_03103 0.16 -0.1 3,257,423 - MPMX20_03103 0.17 -0.2 3,257,458 + MPMX20_03103 0.21 +0.0 3,257,458 + MPMX20_03103 0.21 -0.5 3,257,466 - MPMX20_03103 0.22 +0.6 3,257,468 + MPMX20_03103 0.22 +0.7 3,257,476 - MPMX20_03103 0.23 +0.4 3,257,528 - MPMX20_03103 0.28 +0.8
Or see this region's nucleotide sequence