Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03101

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03100 and MPMX20_03101 are separated by 189 nucleotidesMPMX20_03101 and MPMX20_03102 are separated by 111 nucleotidesMPMX20_03102 and MPMX20_03103 are separated by 66 nucleotides MPMX20_03100: MPMX20_03100 - Beta-xylosidase, at 3,252,299 to 3,254,596 _03100 MPMX20_03101: MPMX20_03101 - Quinone-dependent D-lactate dehydrogenase, at 3,254,786 to 3,256,534 _03101 MPMX20_03102: MPMX20_03102 - Phosphinothricin N-acetyltransferase, at 3,256,646 to 3,257,200 _03102 MPMX20_03103: MPMX20_03103 - D-alanyl-D-alanine endopeptidase, at 3,257,267 to 3,258,190 _03103 Position (kb) 3254 3255 3256 3257Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3253.842 kb on - strand, within MPMX20_03100at 3253.872 kb on + strand, within MPMX20_03100at 3253.880 kb on - strand, within MPMX20_03100at 3253.928 kb on + strand, within MPMX20_03100at 3253.928 kb on + strand, within MPMX20_03100at 3253.928 kb on + strand, within MPMX20_03100at 3253.936 kb on + strand, within MPMX20_03100at 3253.936 kb on - strand, within MPMX20_03100at 3253.953 kb on + strand, within MPMX20_03100at 3253.972 kb on + strand, within MPMX20_03100at 3254.004 kb on + strand, within MPMX20_03100at 3254.012 kb on - strand, within MPMX20_03100at 3254.080 kb on + strand, within MPMX20_03100at 3254.080 kb on + strand, within MPMX20_03100at 3254.088 kb on - strand, within MPMX20_03100at 3254.088 kb on - strand, within MPMX20_03100at 3254.104 kb on + strand, within MPMX20_03100at 3254.221 kb on + strand, within MPMX20_03100at 3254.251 kb on + strand, within MPMX20_03100at 3254.271 kb on + strand, within MPMX20_03100at 3254.332 kb on + strand, within MPMX20_03100at 3254.351 kb on + strand, within MPMX20_03100at 3254.376 kb on + strandat 3254.376 kb on + strandat 3254.384 kb on - strandat 3254.401 kb on + strandat 3254.426 kb on + strandat 3254.479 kb on - strandat 3254.508 kb on - strandat 3254.562 kb on - strandat 3254.600 kb on + strandat 3254.731 kb on + strandat 3254.743 kb on + strandat 3254.745 kb on + strandat 3254.745 kb on + strandat 3254.753 kb on - strandat 3254.770 kb on + strandat 3254.777 kb on - strandat 3254.804 kb on + strandat 3254.806 kb on + strandat 3254.842 kb on + strandat 3254.850 kb on + strandat 3254.850 kb on + strandat 3254.858 kb on - strandat 3254.858 kb on - strandat 3254.909 kb on + strandat 3254.917 kb on - strandat 3255.036 kb on + strand, within MPMX20_03101at 3255.036 kb on + strand, within MPMX20_03101at 3255.162 kb on - strand, within MPMX20_03101at 3255.220 kb on - strand, within MPMX20_03101at 3255.280 kb on + strand, within MPMX20_03101at 3255.283 kb on - strand, within MPMX20_03101at 3255.289 kb on + strand, within MPMX20_03101at 3255.297 kb on - strand, within MPMX20_03101at 3255.388 kb on + strand, within MPMX20_03101at 3255.463 kb on + strand, within MPMX20_03101at 3255.509 kb on - strand, within MPMX20_03101at 3255.591 kb on - strand, within MPMX20_03101at 3255.625 kb on - strand, within MPMX20_03101at 3255.681 kb on + strand, within MPMX20_03101at 3255.691 kb on + strand, within MPMX20_03101at 3255.778 kb on + strand, within MPMX20_03101at 3255.786 kb on - strand, within MPMX20_03101at 3255.853 kb on + strand, within MPMX20_03101at 3255.853 kb on + strand, within MPMX20_03101at 3255.925 kb on + strand, within MPMX20_03101at 3255.951 kb on + strand, within MPMX20_03101at 3255.995 kb on + strand, within MPMX20_03101at 3255.995 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.053 kb on + strand, within MPMX20_03101at 3256.061 kb on - strand, within MPMX20_03101at 3256.061 kb on - strand, within MPMX20_03101at 3256.061 kb on - strand, within MPMX20_03101at 3256.061 kb on - strand, within MPMX20_03101at 3256.061 kb on - strand, within MPMX20_03101at 3256.079 kb on + strand, within MPMX20_03101at 3256.159 kb on + strand, within MPMX20_03101at 3256.159 kb on + strand, within MPMX20_03101at 3256.191 kb on + strand, within MPMX20_03101at 3256.276 kb on + strand, within MPMX20_03101at 3256.276 kb on + strand, within MPMX20_03101at 3256.276 kb on + strand, within MPMX20_03101at 3256.284 kb on - strand, within MPMX20_03101at 3256.284 kb on - strand, within MPMX20_03101at 3256.311 kb on + strand, within MPMX20_03101at 3256.329 kb on - strand, within MPMX20_03101at 3256.369 kb on + strandat 3256.395 kb on - strandat 3256.404 kb on + strandat 3256.443 kb on + strandat 3256.443 kb on + strandat 3256.450 kb on + strandat 3256.494 kb on + strandat 3256.505 kb on + strandat 3256.513 kb on - strandat 3256.578 kb on - strandat 3256.584 kb on + strandat 3256.584 kb on + strandat 3256.587 kb on - strandat 3256.625 kb on + strandat 3256.625 kb on + strandat 3256.625 kb on + strandat 3256.689 kb on + strandat 3256.862 kb on + strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.876 kb on - strand, within MPMX20_03102at 3256.885 kb on + strand, within MPMX20_03102at 3256.909 kb on + strand, within MPMX20_03102at 3256.917 kb on + strand, within MPMX20_03102at 3256.917 kb on - strand, within MPMX20_03102at 3256.917 kb on - strand, within MPMX20_03102at 3257.072 kb on - strand, within MPMX20_03102at 3257.115 kb on + strand, within MPMX20_03102at 3257.170 kb on + strandat 3257.203 kb on - strandat 3257.203 kb on - strandat 3257.219 kb on - strandat 3257.224 kb on - strandat 3257.252 kb on + strandat 3257.283 kb on + strandat 3257.283 kb on + strandat 3257.291 kb on - strandat 3257.323 kb on - strandat 3257.336 kb on + strandat 3257.350 kb on - strandat 3257.383 kb on - strand, within MPMX20_03103at 3257.419 kb on + strand, within MPMX20_03103at 3257.423 kb on - strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.458 kb on + strand, within MPMX20_03103at 3257.466 kb on - strand, within MPMX20_03103at 3257.468 kb on + strand, within MPMX20_03103at 3257.476 kb on - strand, within MPMX20_03103at 3257.528 kb on - strand, within MPMX20_03103

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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3,253,842 - MPMX20_03100 0.67 -1.5
3,253,872 + MPMX20_03100 0.68 +0.6
3,253,880 - MPMX20_03100 0.69 -2.5
3,253,928 + MPMX20_03100 0.71 -0.7
3,253,928 + MPMX20_03100 0.71 -0.2
3,253,928 + MPMX20_03100 0.71 -0.9
3,253,936 + MPMX20_03100 0.71 +1.1
3,253,936 - MPMX20_03100 0.71 -0.7
3,253,953 + MPMX20_03100 0.72 +0.2
3,253,972 + MPMX20_03100 0.73 -0.6
3,254,004 + MPMX20_03100 0.74 -0.4
3,254,012 - MPMX20_03100 0.75 -0.9
3,254,080 + MPMX20_03100 0.78 -0.8
3,254,080 + MPMX20_03100 0.78 -0.4
3,254,088 - MPMX20_03100 0.78 +0.2
3,254,088 - MPMX20_03100 0.78 -0.4
3,254,104 + MPMX20_03100 0.79 -0.4
3,254,221 + MPMX20_03100 0.84 +0.1
3,254,251 + MPMX20_03100 0.85 -0.2
3,254,271 + MPMX20_03100 0.86 -0.7
3,254,332 + MPMX20_03100 0.88 -0.2
3,254,351 + MPMX20_03100 0.89 +0.2
3,254,376 + -0.5
3,254,376 + -0.4
3,254,384 - +0.1
3,254,401 + -1.2
3,254,426 + -0.3
3,254,479 - +0.6
3,254,508 - +0.0
3,254,562 - +0.7
3,254,600 + -0.2
3,254,731 + +1.1
3,254,743 + -0.1
3,254,745 + -0.8
3,254,745 + -0.6
3,254,753 - -0.5
3,254,770 + -0.6
3,254,777 - -0.1
3,254,804 + +0.1
3,254,806 + -2.6
3,254,842 + +0.1
3,254,850 + -1.7
3,254,850 + +0.1
3,254,858 - -1.8
3,254,858 - +0.5
3,254,909 + +1.1
3,254,917 - -0.1
3,255,036 + MPMX20_03101 0.14 -0.7
3,255,036 + MPMX20_03101 0.14 +0.5
3,255,162 - MPMX20_03101 0.21 -1.6
3,255,220 - MPMX20_03101 0.25 -0.3
3,255,280 + MPMX20_03101 0.28 -1.3
3,255,283 - MPMX20_03101 0.28 -0.9
3,255,289 + MPMX20_03101 0.29 -0.2
3,255,297 - MPMX20_03101 0.29 +0.5
3,255,388 + MPMX20_03101 0.34 -0.1
3,255,463 + MPMX20_03101 0.39 +0.5
3,255,509 - MPMX20_03101 0.41 +0.3
3,255,591 - MPMX20_03101 0.46 -0.5
3,255,625 - MPMX20_03101 0.48 +1.9
3,255,681 + MPMX20_03101 0.51 -0.2
3,255,691 + MPMX20_03101 0.52 +2.6
3,255,778 + MPMX20_03101 0.57 -0.8
3,255,786 - MPMX20_03101 0.57 +1.1
3,255,853 + MPMX20_03101 0.61 +0.1
3,255,853 + MPMX20_03101 0.61 +1.7
3,255,925 + MPMX20_03101 0.65 +1.1
3,255,951 + MPMX20_03101 0.67 -1.5
3,255,995 + MPMX20_03101 0.69 -1.0
3,255,995 + MPMX20_03101 0.69 -0.6
3,256,053 + MPMX20_03101 0.72 +0.3
3,256,053 + MPMX20_03101 0.72 -0.7
3,256,053 + MPMX20_03101 0.72 +0.1
3,256,053 + MPMX20_03101 0.72 -0.5
3,256,053 + MPMX20_03101 0.72 -0.8
3,256,053 + MPMX20_03101 0.72 +0.4
3,256,061 - MPMX20_03101 0.73 -0.5
3,256,061 - MPMX20_03101 0.73 -2.6
3,256,061 - MPMX20_03101 0.73 +0.1
3,256,061 - MPMX20_03101 0.73 -0.1
3,256,061 - MPMX20_03101 0.73 +1.1
3,256,079 + MPMX20_03101 0.74 -0.4
3,256,159 + MPMX20_03101 0.79 +0.0
3,256,159 + MPMX20_03101 0.79 -0.3
3,256,191 + MPMX20_03101 0.80 +2.1
3,256,276 + MPMX20_03101 0.85 -0.4
3,256,276 + MPMX20_03101 0.85 +0.1
3,256,276 + MPMX20_03101 0.85 -1.5
3,256,284 - MPMX20_03101 0.86 -0.8
3,256,284 - MPMX20_03101 0.86 -0.2
3,256,311 + MPMX20_03101 0.87 +0.5
3,256,329 - MPMX20_03101 0.88 -1.6
3,256,369 + -0.9
3,256,395 - -0.6
3,256,404 + -0.6
3,256,443 + +0.8
3,256,443 + +0.7
3,256,450 + -0.3
3,256,494 + +0.6
3,256,505 + -1.1
3,256,513 - -0.1
3,256,578 - -0.5
3,256,584 + +0.7
3,256,584 + +0.1
3,256,587 - +0.5
3,256,625 + -1.0
3,256,625 + -0.0
3,256,625 + -0.3
3,256,689 + +0.6
3,256,862 + MPMX20_03102 0.39 +0.1
3,256,876 - MPMX20_03102 0.41 +0.7
3,256,876 - MPMX20_03102 0.41 +0.4
3,256,876 - MPMX20_03102 0.41 -0.2
3,256,885 + MPMX20_03102 0.43 +0.4
3,256,909 + MPMX20_03102 0.47 -0.4
3,256,917 + MPMX20_03102 0.49 +0.1
3,256,917 - MPMX20_03102 0.49 -0.0
3,256,917 - MPMX20_03102 0.49 -1.2
3,257,072 - MPMX20_03102 0.77 +0.4
3,257,115 + MPMX20_03102 0.85 +0.3
3,257,170 + -0.1
3,257,203 - +0.3
3,257,203 - +3.9
3,257,219 - -0.2
3,257,224 - -0.7
3,257,252 + -0.6
3,257,283 + -0.9
3,257,283 + -1.0
3,257,291 - +0.1
3,257,323 - -1.3
3,257,336 + -0.0
3,257,350 - +2.0
3,257,383 - MPMX20_03103 0.13 +0.8
3,257,419 + MPMX20_03103 0.16 -0.1
3,257,423 - MPMX20_03103 0.17 -0.2
3,257,458 + MPMX20_03103 0.21 +0.0
3,257,458 + MPMX20_03103 0.21 -0.5
3,257,466 - MPMX20_03103 0.22 +0.6
3,257,468 + MPMX20_03103 0.22 +0.7
3,257,476 - MPMX20_03103 0.23 +0.4
3,257,528 - MPMX20_03103 0.28 +0.8

Or see this region's nucleotide sequence