Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02515

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02513 and MPMX20_02514 overlap by 1 nucleotidesMPMX20_02514 and MPMX20_02515 are separated by 43 nucleotidesMPMX20_02515 and MPMX20_02516 are separated by 46 nucleotidesMPMX20_02516 and MPMX20_02517 are separated by 176 nucleotides MPMX20_02513: MPMX20_02513 - Tryptophan synthase beta chain, at 2,655,843 to 2,657,036 _02513 MPMX20_02514: MPMX20_02514 - Tryptophan synthase alpha chain, at 2,657,036 to 2,657,845 _02514 MPMX20_02515: MPMX20_02515 - Alcohol dehydrogenase, at 2,657,889 to 2,658,896 _02515 MPMX20_02516: MPMX20_02516 - Glucose 1-dehydrogenase, at 2,658,943 to 2,659,719 _02516 MPMX20_02517: MPMX20_02517 - Glycine cleavage system transcriptional activator, at 2,659,896 to 2,660,810 _02517 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2656.892 kb on - strand, within MPMX20_02513at 2656.892 kb on - strand, within MPMX20_02513at 2656.960 kb on + strandat 2657.063 kb on - strandat 2657.090 kb on + strandat 2657.163 kb on - strand, within MPMX20_02514at 2657.163 kb on - strand, within MPMX20_02514at 2657.183 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.233 kb on - strand, within MPMX20_02514at 2657.259 kb on + strand, within MPMX20_02514at 2657.340 kb on + strand, within MPMX20_02514at 2657.344 kb on - strand, within MPMX20_02514at 2657.576 kb on + strand, within MPMX20_02514at 2657.724 kb on + strand, within MPMX20_02514at 2657.775 kb on + strandat 2657.780 kb on + strandat 2657.783 kb on - strandat 2657.840 kb on + strandat 2657.861 kb on + strandat 2657.925 kb on - strandat 2657.939 kb on + strandat 2657.947 kb on - strandat 2657.969 kb on + strandat 2658.156 kb on + strand, within MPMX20_02515at 2658.221 kb on - strand, within MPMX20_02515at 2658.338 kb on + strand, within MPMX20_02515at 2658.346 kb on - strand, within MPMX20_02515at 2658.346 kb on - strand, within MPMX20_02515at 2658.443 kb on + strand, within MPMX20_02515at 2658.443 kb on + strand, within MPMX20_02515at 2658.451 kb on - strand, within MPMX20_02515at 2658.577 kb on - strand, within MPMX20_02515at 2658.577 kb on - strand, within MPMX20_02515at 2658.750 kb on - strand, within MPMX20_02515at 2658.861 kb on - strandat 2658.925 kb on + strandat 2658.931 kb on - strandat 2658.933 kb on - strandat 2658.933 kb on - strandat 2659.074 kb on + strand, within MPMX20_02516at 2659.082 kb on - strand, within MPMX20_02516at 2659.101 kb on - strand, within MPMX20_02516at 2659.104 kb on + strand, within MPMX20_02516at 2659.104 kb on + strand, within MPMX20_02516at 2659.123 kb on + strand, within MPMX20_02516at 2659.165 kb on + strand, within MPMX20_02516at 2659.169 kb on + strand, within MPMX20_02516at 2659.177 kb on - strand, within MPMX20_02516at 2659.195 kb on + strand, within MPMX20_02516at 2659.203 kb on - strand, within MPMX20_02516at 2659.205 kb on - strand, within MPMX20_02516at 2659.250 kb on - strand, within MPMX20_02516at 2659.289 kb on - strand, within MPMX20_02516at 2659.350 kb on + strand, within MPMX20_02516at 2659.438 kb on + strand, within MPMX20_02516at 2659.459 kb on - strand, within MPMX20_02516at 2659.473 kb on - strand, within MPMX20_02516at 2659.501 kb on - strand, within MPMX20_02516at 2659.507 kb on + strand, within MPMX20_02516at 2659.515 kb on - strand, within MPMX20_02516at 2659.558 kb on + strand, within MPMX20_02516at 2659.584 kb on + strand, within MPMX20_02516at 2659.595 kb on + strand, within MPMX20_02516at 2659.622 kb on - strand, within MPMX20_02516at 2659.797 kb on - strandat 2659.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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2,656,892 - MPMX20_02513 0.88 -1.9
2,656,892 - MPMX20_02513 0.88 -1.4
2,656,960 + -2.9
2,657,063 - -2.3
2,657,090 + -3.6
2,657,163 - MPMX20_02514 0.16 -3.1
2,657,163 - MPMX20_02514 0.16 -4.5
2,657,183 - MPMX20_02514 0.18 -1.8
2,657,233 - MPMX20_02514 0.24 -3.7
2,657,233 - MPMX20_02514 0.24 -2.7
2,657,233 - MPMX20_02514 0.24 -2.4
2,657,259 + MPMX20_02514 0.28 -1.8
2,657,340 + MPMX20_02514 0.38 -2.9
2,657,344 - MPMX20_02514 0.38 -3.0
2,657,576 + MPMX20_02514 0.67 -4.0
2,657,724 + MPMX20_02514 0.85 -2.1
2,657,775 + -3.3
2,657,780 + -1.6
2,657,783 - -2.5
2,657,840 + +1.5
2,657,861 + +0.1
2,657,925 - +0.3
2,657,939 + +1.4
2,657,947 - +0.2
2,657,969 + -0.3
2,658,156 + MPMX20_02515 0.26 +0.6
2,658,221 - MPMX20_02515 0.33 +1.1
2,658,338 + MPMX20_02515 0.45 +0.8
2,658,346 - MPMX20_02515 0.45 +0.7
2,658,346 - MPMX20_02515 0.45 -0.1
2,658,443 + MPMX20_02515 0.55 -1.3
2,658,443 + MPMX20_02515 0.55 -1.4
2,658,451 - MPMX20_02515 0.56 -1.9
2,658,577 - MPMX20_02515 0.68 +2.9
2,658,577 - MPMX20_02515 0.68 +0.0
2,658,750 - MPMX20_02515 0.85 +0.4
2,658,861 - +0.4
2,658,925 + -0.3
2,658,931 - -1.9
2,658,933 - +0.1
2,658,933 - -0.6
2,659,074 + MPMX20_02516 0.17 -0.1
2,659,082 - MPMX20_02516 0.18 -1.8
2,659,101 - MPMX20_02516 0.20 +0.1
2,659,104 + MPMX20_02516 0.21 -1.6
2,659,104 + MPMX20_02516 0.21 -2.7
2,659,123 + MPMX20_02516 0.23 -0.5
2,659,165 + MPMX20_02516 0.29 +1.0
2,659,169 + MPMX20_02516 0.29 +0.4
2,659,177 - MPMX20_02516 0.30 +0.6
2,659,195 + MPMX20_02516 0.32 +0.3
2,659,203 - MPMX20_02516 0.33 -0.2
2,659,205 - MPMX20_02516 0.34 +0.2
2,659,250 - MPMX20_02516 0.40 +0.8
2,659,289 - MPMX20_02516 0.45 -0.5
2,659,350 + MPMX20_02516 0.52 -1.5
2,659,438 + MPMX20_02516 0.64 +0.3
2,659,459 - MPMX20_02516 0.66 -0.6
2,659,473 - MPMX20_02516 0.68 -0.3
2,659,501 - MPMX20_02516 0.72 +0.4
2,659,507 + MPMX20_02516 0.73 -2.2
2,659,515 - MPMX20_02516 0.74 -0.7
2,659,558 + MPMX20_02516 0.79 -0.4
2,659,584 + MPMX20_02516 0.82 +1.4
2,659,595 + MPMX20_02516 0.84 -0.6
2,659,622 - MPMX20_02516 0.87 +0.3
2,659,797 - +0.1
2,659,807 + -0.6

Or see this region's nucleotide sequence