Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02513 and MPMX20_02514 overlap by 1 nucleotides MPMX20_02514 and MPMX20_02515 are separated by 43 nucleotides MPMX20_02515 and MPMX20_02516 are separated by 46 nucleotides MPMX20_02516 and MPMX20_02517 are separated by 176 nucleotides
MPMX20_02513: MPMX20_02513 - Tryptophan synthase beta chain, at 2,655,843 to 2,657,036
_02513
MPMX20_02514: MPMX20_02514 - Tryptophan synthase alpha chain, at 2,657,036 to 2,657,845
_02514
MPMX20_02515: MPMX20_02515 - Alcohol dehydrogenase, at 2,657,889 to 2,658,896
_02515
MPMX20_02516: MPMX20_02516 - Glucose 1-dehydrogenase, at 2,658,943 to 2,659,719
_02516
MPMX20_02517: MPMX20_02517 - Glycine cleavage system transcriptional activator, at 2,659,896 to 2,660,810
_02517
Position (kb)
2657
2658
2659 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2656.892 kb on - strand, within MPMX20_02513 at 2656.892 kb on - strand, within MPMX20_02513 at 2656.960 kb on + strand at 2657.063 kb on - strand at 2657.090 kb on + strand at 2657.163 kb on - strand, within MPMX20_02514 at 2657.163 kb on - strand, within MPMX20_02514 at 2657.183 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.233 kb on - strand, within MPMX20_02514 at 2657.259 kb on + strand, within MPMX20_02514 at 2657.340 kb on + strand, within MPMX20_02514 at 2657.344 kb on - strand, within MPMX20_02514 at 2657.576 kb on + strand, within MPMX20_02514 at 2657.724 kb on + strand, within MPMX20_02514 at 2657.775 kb on + strand at 2657.780 kb on + strand at 2657.783 kb on - strand at 2657.840 kb on + strand at 2657.861 kb on + strand at 2657.925 kb on - strand at 2657.939 kb on + strand at 2657.947 kb on - strand at 2657.969 kb on + strand at 2658.156 kb on + strand, within MPMX20_02515 at 2658.221 kb on - strand, within MPMX20_02515 at 2658.338 kb on + strand, within MPMX20_02515 at 2658.346 kb on - strand, within MPMX20_02515 at 2658.346 kb on - strand, within MPMX20_02515 at 2658.443 kb on + strand, within MPMX20_02515 at 2658.443 kb on + strand, within MPMX20_02515 at 2658.451 kb on - strand, within MPMX20_02515 at 2658.577 kb on - strand, within MPMX20_02515 at 2658.577 kb on - strand, within MPMX20_02515 at 2658.750 kb on - strand, within MPMX20_02515 at 2658.861 kb on - strand at 2658.925 kb on + strand at 2658.931 kb on - strand at 2658.933 kb on - strand at 2658.933 kb on - strand at 2659.074 kb on + strand, within MPMX20_02516 at 2659.082 kb on - strand, within MPMX20_02516 at 2659.101 kb on - strand, within MPMX20_02516 at 2659.104 kb on + strand, within MPMX20_02516 at 2659.104 kb on + strand, within MPMX20_02516 at 2659.123 kb on + strand, within MPMX20_02516 at 2659.165 kb on + strand, within MPMX20_02516 at 2659.169 kb on + strand, within MPMX20_02516 at 2659.177 kb on - strand, within MPMX20_02516 at 2659.195 kb on + strand, within MPMX20_02516 at 2659.203 kb on - strand, within MPMX20_02516 at 2659.205 kb on - strand, within MPMX20_02516 at 2659.250 kb on - strand, within MPMX20_02516 at 2659.289 kb on - strand, within MPMX20_02516 at 2659.350 kb on + strand, within MPMX20_02516 at 2659.438 kb on + strand, within MPMX20_02516 at 2659.459 kb on - strand, within MPMX20_02516 at 2659.473 kb on - strand, within MPMX20_02516 at 2659.501 kb on - strand, within MPMX20_02516 at 2659.507 kb on + strand, within MPMX20_02516 at 2659.515 kb on - strand, within MPMX20_02516 at 2659.558 kb on + strand, within MPMX20_02516 at 2659.584 kb on + strand, within MPMX20_02516 at 2659.595 kb on + strand, within MPMX20_02516 at 2659.622 kb on - strand, within MPMX20_02516 at 2659.797 kb on - strand at 2659.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 2,656,892 - MPMX20_02513 0.88 -1.9 2,656,892 - MPMX20_02513 0.88 -1.4 2,656,960 + -2.9 2,657,063 - -2.3 2,657,090 + -3.6 2,657,163 - MPMX20_02514 0.16 -3.1 2,657,163 - MPMX20_02514 0.16 -4.5 2,657,183 - MPMX20_02514 0.18 -1.8 2,657,233 - MPMX20_02514 0.24 -3.7 2,657,233 - MPMX20_02514 0.24 -2.7 2,657,233 - MPMX20_02514 0.24 -2.4 2,657,259 + MPMX20_02514 0.28 -1.8 2,657,340 + MPMX20_02514 0.38 -2.9 2,657,344 - MPMX20_02514 0.38 -3.0 2,657,576 + MPMX20_02514 0.67 -4.0 2,657,724 + MPMX20_02514 0.85 -2.1 2,657,775 + -3.3 2,657,780 + -1.6 2,657,783 - -2.5 2,657,840 + +1.5 2,657,861 + +0.1 2,657,925 - +0.3 2,657,939 + +1.4 2,657,947 - +0.2 2,657,969 + -0.3 2,658,156 + MPMX20_02515 0.26 +0.6 2,658,221 - MPMX20_02515 0.33 +1.1 2,658,338 + MPMX20_02515 0.45 +0.8 2,658,346 - MPMX20_02515 0.45 +0.7 2,658,346 - MPMX20_02515 0.45 -0.1 2,658,443 + MPMX20_02515 0.55 -1.3 2,658,443 + MPMX20_02515 0.55 -1.4 2,658,451 - MPMX20_02515 0.56 -1.9 2,658,577 - MPMX20_02515 0.68 +2.9 2,658,577 - MPMX20_02515 0.68 +0.0 2,658,750 - MPMX20_02515 0.85 +0.4 2,658,861 - +0.4 2,658,925 + -0.3 2,658,931 - -1.9 2,658,933 - +0.1 2,658,933 - -0.6 2,659,074 + MPMX20_02516 0.17 -0.1 2,659,082 - MPMX20_02516 0.18 -1.8 2,659,101 - MPMX20_02516 0.20 +0.1 2,659,104 + MPMX20_02516 0.21 -1.6 2,659,104 + MPMX20_02516 0.21 -2.7 2,659,123 + MPMX20_02516 0.23 -0.5 2,659,165 + MPMX20_02516 0.29 +1.0 2,659,169 + MPMX20_02516 0.29 +0.4 2,659,177 - MPMX20_02516 0.30 +0.6 2,659,195 + MPMX20_02516 0.32 +0.3 2,659,203 - MPMX20_02516 0.33 -0.2 2,659,205 - MPMX20_02516 0.34 +0.2 2,659,250 - MPMX20_02516 0.40 +0.8 2,659,289 - MPMX20_02516 0.45 -0.5 2,659,350 + MPMX20_02516 0.52 -1.5 2,659,438 + MPMX20_02516 0.64 +0.3 2,659,459 - MPMX20_02516 0.66 -0.6 2,659,473 - MPMX20_02516 0.68 -0.3 2,659,501 - MPMX20_02516 0.72 +0.4 2,659,507 + MPMX20_02516 0.73 -2.2 2,659,515 - MPMX20_02516 0.74 -0.7 2,659,558 + MPMX20_02516 0.79 -0.4 2,659,584 + MPMX20_02516 0.82 +1.4 2,659,595 + MPMX20_02516 0.84 -0.6 2,659,622 - MPMX20_02516 0.87 +0.3 2,659,797 - +0.1 2,659,807 + -0.6
Or see this region's nucleotide sequence