Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01530 and MPMX20_01531 are separated by 10 nucleotides MPMX20_01531 and MPMX20_01532 are separated by 38 nucleotides
MPMX20_01530: MPMX20_01530 - hypothetical protein, at 1,598,949 to 1,600,388
_01530
MPMX20_01531: MPMX20_01531 - Low specificity L-threonine aldolase, at 1,600,399 to 1,601,400
_01531
MPMX20_01532: MPMX20_01532 - Pyruvate dehydrogenase [ubiquinone], at 1,601,439 to 1,603,157
_01532
Position (kb)
1600
1601
1602 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1599.410 kb on + strand, within MPMX20_01530 at 1599.458 kb on - strand, within MPMX20_01530 at 1599.458 kb on - strand, within MPMX20_01530 at 1599.542 kb on + strand, within MPMX20_01530 at 1599.598 kb on + strand, within MPMX20_01530 at 1599.606 kb on - strand, within MPMX20_01530 at 1599.645 kb on - strand, within MPMX20_01530 at 1599.735 kb on + strand, within MPMX20_01530 at 1599.745 kb on - strand, within MPMX20_01530 at 1599.758 kb on - strand, within MPMX20_01530 at 1599.769 kb on + strand, within MPMX20_01530 at 1599.783 kb on + strand, within MPMX20_01530 at 1599.791 kb on - strand, within MPMX20_01530 at 1599.791 kb on - strand, within MPMX20_01530 at 1599.860 kb on + strand, within MPMX20_01530 at 1599.868 kb on - strand, within MPMX20_01530 at 1599.894 kb on + strand, within MPMX20_01530 at 1599.894 kb on + strand, within MPMX20_01530 at 1599.894 kb on + strand, within MPMX20_01530 at 1599.894 kb on + strand, within MPMX20_01530 at 1599.902 kb on - strand, within MPMX20_01530 at 1599.902 kb on - strand, within MPMX20_01530 at 1599.902 kb on - strand, within MPMX20_01530 at 1599.910 kb on - strand, within MPMX20_01530 at 1600.049 kb on + strand, within MPMX20_01530 at 1600.100 kb on - strand, within MPMX20_01530 at 1600.157 kb on - strand, within MPMX20_01530 at 1600.164 kb on + strand, within MPMX20_01530 at 1600.179 kb on - strand, within MPMX20_01530 at 1600.232 kb on - strand, within MPMX20_01530 at 1600.328 kb on - strand at 1600.370 kb on + strand at 1600.389 kb on + strand at 1600.392 kb on - strand at 1600.400 kb on - strand at 1600.423 kb on + strand at 1600.465 kb on + strand at 1600.517 kb on + strand, within MPMX20_01531 at 1600.649 kb on + strand, within MPMX20_01531 at 1600.734 kb on + strand, within MPMX20_01531 at 1600.764 kb on + strand, within MPMX20_01531 at 1600.826 kb on - strand, within MPMX20_01531 at 1600.867 kb on + strand, within MPMX20_01531 at 1600.867 kb on + strand, within MPMX20_01531 at 1600.903 kb on + strand, within MPMX20_01531 at 1600.949 kb on + strand, within MPMX20_01531 at 1600.957 kb on - strand, within MPMX20_01531 at 1600.957 kb on - strand, within MPMX20_01531 at 1600.957 kb on - strand, within MPMX20_01531 at 1600.997 kb on + strand, within MPMX20_01531 at 1600.997 kb on + strand, within MPMX20_01531 at 1601.005 kb on - strand, within MPMX20_01531 at 1601.065 kb on + strand, within MPMX20_01531 at 1601.103 kb on + strand, within MPMX20_01531 at 1601.121 kb on - strand, within MPMX20_01531 at 1601.121 kb on - strand, within MPMX20_01531 at 1601.168 kb on + strand, within MPMX20_01531 at 1601.253 kb on + strand, within MPMX20_01531 at 1601.258 kb on - strand, within MPMX20_01531 at 1601.281 kb on - strand, within MPMX20_01531 at 1601.309 kb on + strand at 1601.317 kb on - strand at 1601.365 kb on - strand at 1601.370 kb on + strand at 1601.376 kb on + strand at 1601.376 kb on + strand at 1601.376 kb on + strand at 1601.376 kb on + strand at 1601.376 kb on + strand at 1601.384 kb on - strand at 1601.384 kb on - strand at 1601.463 kb on - strand at 1601.507 kb on + strand at 1601.514 kb on - strand at 1601.518 kb on - strand at 1601.524 kb on + strand at 1601.524 kb on + strand at 1601.524 kb on + strand at 1601.532 kb on - strand at 1601.539 kb on + strand at 1601.547 kb on - strand at 1601.572 kb on - strand at 1601.594 kb on + strand at 1601.602 kb on - strand at 1601.613 kb on - strand, within MPMX20_01532 at 1601.622 kb on + strand, within MPMX20_01532 at 1601.714 kb on + strand, within MPMX20_01532 at 1601.771 kb on + strand, within MPMX20_01532 at 1601.772 kb on - strand, within MPMX20_01532 at 1601.981 kb on + strand, within MPMX20_01532 at 1601.989 kb on - strand, within MPMX20_01532 at 1602.070 kb on + strand, within MPMX20_01532 at 1602.147 kb on + strand, within MPMX20_01532 at 1602.152 kb on + strand, within MPMX20_01532 at 1602.155 kb on - strand, within MPMX20_01532 at 1602.155 kb on - strand, within MPMX20_01532 at 1602.255 kb on - strand, within MPMX20_01532 at 1602.260 kb on + strand, within MPMX20_01532 at 1602.260 kb on + strand, within MPMX20_01532 at 1602.268 kb on - strand, within MPMX20_01532 at 1602.347 kb on + strand, within MPMX20_01532 at 1602.355 kb on - strand, within MPMX20_01532
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,599,410 + MPMX20_01530 0.32 +0.4 1,599,458 - MPMX20_01530 0.35 +0.2 1,599,458 - MPMX20_01530 0.35 -0.1 1,599,542 + MPMX20_01530 0.41 +0.0 1,599,598 + MPMX20_01530 0.45 -0.2 1,599,606 - MPMX20_01530 0.46 +0.4 1,599,645 - MPMX20_01530 0.48 -1.4 1,599,735 + MPMX20_01530 0.55 +1.1 1,599,745 - MPMX20_01530 0.55 +0.8 1,599,758 - MPMX20_01530 0.56 -0.1 1,599,769 + MPMX20_01530 0.57 +0.0 1,599,783 + MPMX20_01530 0.58 -0.1 1,599,791 - MPMX20_01530 0.58 +0.8 1,599,791 - MPMX20_01530 0.58 -0.1 1,599,860 + MPMX20_01530 0.63 +0.1 1,599,868 - MPMX20_01530 0.64 -0.9 1,599,894 + MPMX20_01530 0.66 -0.4 1,599,894 + MPMX20_01530 0.66 +0.3 1,599,894 + MPMX20_01530 0.66 -0.0 1,599,894 + MPMX20_01530 0.66 +0.3 1,599,902 - MPMX20_01530 0.66 -1.4 1,599,902 - MPMX20_01530 0.66 -0.7 1,599,902 - MPMX20_01530 0.66 +0.8 1,599,910 - MPMX20_01530 0.67 +1.3 1,600,049 + MPMX20_01530 0.76 +1.1 1,600,100 - MPMX20_01530 0.80 +4.0 1,600,157 - MPMX20_01530 0.84 -1.5 1,600,164 + MPMX20_01530 0.84 -0.3 1,600,179 - MPMX20_01530 0.85 -0.7 1,600,232 - MPMX20_01530 0.89 -3.3 1,600,328 - +0.4 1,600,370 + +0.3 1,600,389 + +0.1 1,600,392 - -0.3 1,600,400 - -0.8 1,600,423 + -0.0 1,600,465 + -0.0 1,600,517 + MPMX20_01531 0.12 +1.1 1,600,649 + MPMX20_01531 0.25 +0.3 1,600,734 + MPMX20_01531 0.33 -0.2 1,600,764 + MPMX20_01531 0.36 -0.8 1,600,826 - MPMX20_01531 0.43 -0.1 1,600,867 + MPMX20_01531 0.47 -0.5 1,600,867 + MPMX20_01531 0.47 +0.6 1,600,903 + MPMX20_01531 0.50 -0.9 1,600,949 + MPMX20_01531 0.55 -0.1 1,600,957 - MPMX20_01531 0.56 -0.2 1,600,957 - MPMX20_01531 0.56 +0.2 1,600,957 - MPMX20_01531 0.56 +1.0 1,600,997 + MPMX20_01531 0.60 +0.6 1,600,997 + MPMX20_01531 0.60 +0.0 1,601,005 - MPMX20_01531 0.60 -1.4 1,601,065 + MPMX20_01531 0.66 +1.4 1,601,103 + MPMX20_01531 0.70 -0.1 1,601,121 - MPMX20_01531 0.72 -0.5 1,601,121 - MPMX20_01531 0.72 +1.2 1,601,168 + MPMX20_01531 0.77 +1.2 1,601,253 + MPMX20_01531 0.85 -1.7 1,601,258 - MPMX20_01531 0.86 +1.2 1,601,281 - MPMX20_01531 0.88 -1.9 1,601,309 + -0.6 1,601,317 - -0.8 1,601,365 - +0.9 1,601,370 + +1.0 1,601,376 + -1.0 1,601,376 + -0.5 1,601,376 + -0.3 1,601,376 + +0.5 1,601,376 + -0.1 1,601,384 - +0.3 1,601,384 - -0.3 1,601,463 - -0.7 1,601,507 + +0.6 1,601,514 - -1.0 1,601,518 - +0.3 1,601,524 + +0.8 1,601,524 + +0.4 1,601,524 + -0.7 1,601,532 - +0.1 1,601,539 + -0.8 1,601,547 - -0.3 1,601,572 - +0.3 1,601,594 + +0.2 1,601,602 - +0.0 1,601,613 - MPMX20_01532 0.10 +0.2 1,601,622 + MPMX20_01532 0.11 +0.3 1,601,714 + MPMX20_01532 0.16 +1.6 1,601,771 + MPMX20_01532 0.19 -1.1 1,601,772 - MPMX20_01532 0.19 -0.3 1,601,981 + MPMX20_01532 0.32 +0.2 1,601,989 - MPMX20_01532 0.32 -1.2 1,602,070 + MPMX20_01532 0.37 -1.0 1,602,147 + MPMX20_01532 0.41 +1.0 1,602,152 + MPMX20_01532 0.41 +1.7 1,602,155 - MPMX20_01532 0.42 -0.3 1,602,155 - MPMX20_01532 0.42 +4.2 1,602,255 - MPMX20_01532 0.47 +0.6 1,602,260 + MPMX20_01532 0.48 -0.4 1,602,260 + MPMX20_01532 0.48 -0.4 1,602,268 - MPMX20_01532 0.48 -0.4 1,602,347 + MPMX20_01532 0.53 -2.3 1,602,355 - MPMX20_01532 0.53 +0.5
Or see this region's nucleotide sequence