Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01531

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01530 and MPMX20_01531 are separated by 10 nucleotidesMPMX20_01531 and MPMX20_01532 are separated by 38 nucleotides MPMX20_01530: MPMX20_01530 - hypothetical protein, at 1,598,949 to 1,600,388 _01530 MPMX20_01531: MPMX20_01531 - Low specificity L-threonine aldolase, at 1,600,399 to 1,601,400 _01531 MPMX20_01532: MPMX20_01532 - Pyruvate dehydrogenase [ubiquinone], at 1,601,439 to 1,603,157 _01532 Position (kb) 1600 1601 1602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1599.410 kb on + strand, within MPMX20_01530at 1599.458 kb on - strand, within MPMX20_01530at 1599.458 kb on - strand, within MPMX20_01530at 1599.542 kb on + strand, within MPMX20_01530at 1599.598 kb on + strand, within MPMX20_01530at 1599.606 kb on - strand, within MPMX20_01530at 1599.645 kb on - strand, within MPMX20_01530at 1599.735 kb on + strand, within MPMX20_01530at 1599.745 kb on - strand, within MPMX20_01530at 1599.758 kb on - strand, within MPMX20_01530at 1599.769 kb on + strand, within MPMX20_01530at 1599.783 kb on + strand, within MPMX20_01530at 1599.791 kb on - strand, within MPMX20_01530at 1599.791 kb on - strand, within MPMX20_01530at 1599.860 kb on + strand, within MPMX20_01530at 1599.868 kb on - strand, within MPMX20_01530at 1599.894 kb on + strand, within MPMX20_01530at 1599.894 kb on + strand, within MPMX20_01530at 1599.894 kb on + strand, within MPMX20_01530at 1599.894 kb on + strand, within MPMX20_01530at 1599.902 kb on - strand, within MPMX20_01530at 1599.902 kb on - strand, within MPMX20_01530at 1599.902 kb on - strand, within MPMX20_01530at 1599.910 kb on - strand, within MPMX20_01530at 1600.049 kb on + strand, within MPMX20_01530at 1600.100 kb on - strand, within MPMX20_01530at 1600.157 kb on - strand, within MPMX20_01530at 1600.164 kb on + strand, within MPMX20_01530at 1600.179 kb on - strand, within MPMX20_01530at 1600.232 kb on - strand, within MPMX20_01530at 1600.328 kb on - strandat 1600.370 kb on + strandat 1600.389 kb on + strandat 1600.392 kb on - strandat 1600.400 kb on - strandat 1600.423 kb on + strandat 1600.465 kb on + strandat 1600.517 kb on + strand, within MPMX20_01531at 1600.649 kb on + strand, within MPMX20_01531at 1600.734 kb on + strand, within MPMX20_01531at 1600.764 kb on + strand, within MPMX20_01531at 1600.826 kb on - strand, within MPMX20_01531at 1600.867 kb on + strand, within MPMX20_01531at 1600.867 kb on + strand, within MPMX20_01531at 1600.903 kb on + strand, within MPMX20_01531at 1600.949 kb on + strand, within MPMX20_01531at 1600.957 kb on - strand, within MPMX20_01531at 1600.957 kb on - strand, within MPMX20_01531at 1600.957 kb on - strand, within MPMX20_01531at 1600.997 kb on + strand, within MPMX20_01531at 1600.997 kb on + strand, within MPMX20_01531at 1601.005 kb on - strand, within MPMX20_01531at 1601.065 kb on + strand, within MPMX20_01531at 1601.103 kb on + strand, within MPMX20_01531at 1601.121 kb on - strand, within MPMX20_01531at 1601.121 kb on - strand, within MPMX20_01531at 1601.168 kb on + strand, within MPMX20_01531at 1601.253 kb on + strand, within MPMX20_01531at 1601.258 kb on - strand, within MPMX20_01531at 1601.281 kb on - strand, within MPMX20_01531at 1601.309 kb on + strandat 1601.317 kb on - strandat 1601.365 kb on - strandat 1601.370 kb on + strandat 1601.376 kb on + strandat 1601.376 kb on + strandat 1601.376 kb on + strandat 1601.376 kb on + strandat 1601.376 kb on + strandat 1601.384 kb on - strandat 1601.384 kb on - strandat 1601.463 kb on - strandat 1601.507 kb on + strandat 1601.514 kb on - strandat 1601.518 kb on - strandat 1601.524 kb on + strandat 1601.524 kb on + strandat 1601.524 kb on + strandat 1601.532 kb on - strandat 1601.539 kb on + strandat 1601.547 kb on - strandat 1601.572 kb on - strandat 1601.594 kb on + strandat 1601.602 kb on - strandat 1601.613 kb on - strand, within MPMX20_01532at 1601.622 kb on + strand, within MPMX20_01532at 1601.714 kb on + strand, within MPMX20_01532at 1601.771 kb on + strand, within MPMX20_01532at 1601.772 kb on - strand, within MPMX20_01532at 1601.981 kb on + strand, within MPMX20_01532at 1601.989 kb on - strand, within MPMX20_01532at 1602.070 kb on + strand, within MPMX20_01532at 1602.147 kb on + strand, within MPMX20_01532at 1602.152 kb on + strand, within MPMX20_01532at 1602.155 kb on - strand, within MPMX20_01532at 1602.155 kb on - strand, within MPMX20_01532at 1602.255 kb on - strand, within MPMX20_01532at 1602.260 kb on + strand, within MPMX20_01532at 1602.260 kb on + strand, within MPMX20_01532at 1602.268 kb on - strand, within MPMX20_01532at 1602.347 kb on + strand, within MPMX20_01532at 1602.355 kb on - strand, within MPMX20_01532

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,599,410 + MPMX20_01530 0.32 +0.4
1,599,458 - MPMX20_01530 0.35 +0.2
1,599,458 - MPMX20_01530 0.35 -0.1
1,599,542 + MPMX20_01530 0.41 +0.0
1,599,598 + MPMX20_01530 0.45 -0.2
1,599,606 - MPMX20_01530 0.46 +0.4
1,599,645 - MPMX20_01530 0.48 -1.4
1,599,735 + MPMX20_01530 0.55 +1.1
1,599,745 - MPMX20_01530 0.55 +0.8
1,599,758 - MPMX20_01530 0.56 -0.1
1,599,769 + MPMX20_01530 0.57 +0.0
1,599,783 + MPMX20_01530 0.58 -0.1
1,599,791 - MPMX20_01530 0.58 +0.8
1,599,791 - MPMX20_01530 0.58 -0.1
1,599,860 + MPMX20_01530 0.63 +0.1
1,599,868 - MPMX20_01530 0.64 -0.9
1,599,894 + MPMX20_01530 0.66 -0.4
1,599,894 + MPMX20_01530 0.66 +0.3
1,599,894 + MPMX20_01530 0.66 -0.0
1,599,894 + MPMX20_01530 0.66 +0.3
1,599,902 - MPMX20_01530 0.66 -1.4
1,599,902 - MPMX20_01530 0.66 -0.7
1,599,902 - MPMX20_01530 0.66 +0.8
1,599,910 - MPMX20_01530 0.67 +1.3
1,600,049 + MPMX20_01530 0.76 +1.1
1,600,100 - MPMX20_01530 0.80 +4.0
1,600,157 - MPMX20_01530 0.84 -1.5
1,600,164 + MPMX20_01530 0.84 -0.3
1,600,179 - MPMX20_01530 0.85 -0.7
1,600,232 - MPMX20_01530 0.89 -3.3
1,600,328 - +0.4
1,600,370 + +0.3
1,600,389 + +0.1
1,600,392 - -0.3
1,600,400 - -0.8
1,600,423 + -0.0
1,600,465 + -0.0
1,600,517 + MPMX20_01531 0.12 +1.1
1,600,649 + MPMX20_01531 0.25 +0.3
1,600,734 + MPMX20_01531 0.33 -0.2
1,600,764 + MPMX20_01531 0.36 -0.8
1,600,826 - MPMX20_01531 0.43 -0.1
1,600,867 + MPMX20_01531 0.47 -0.5
1,600,867 + MPMX20_01531 0.47 +0.6
1,600,903 + MPMX20_01531 0.50 -0.9
1,600,949 + MPMX20_01531 0.55 -0.1
1,600,957 - MPMX20_01531 0.56 -0.2
1,600,957 - MPMX20_01531 0.56 +0.2
1,600,957 - MPMX20_01531 0.56 +1.0
1,600,997 + MPMX20_01531 0.60 +0.6
1,600,997 + MPMX20_01531 0.60 +0.0
1,601,005 - MPMX20_01531 0.60 -1.4
1,601,065 + MPMX20_01531 0.66 +1.4
1,601,103 + MPMX20_01531 0.70 -0.1
1,601,121 - MPMX20_01531 0.72 -0.5
1,601,121 - MPMX20_01531 0.72 +1.2
1,601,168 + MPMX20_01531 0.77 +1.2
1,601,253 + MPMX20_01531 0.85 -1.7
1,601,258 - MPMX20_01531 0.86 +1.2
1,601,281 - MPMX20_01531 0.88 -1.9
1,601,309 + -0.6
1,601,317 - -0.8
1,601,365 - +0.9
1,601,370 + +1.0
1,601,376 + -1.0
1,601,376 + -0.5
1,601,376 + -0.3
1,601,376 + +0.5
1,601,376 + -0.1
1,601,384 - +0.3
1,601,384 - -0.3
1,601,463 - -0.7
1,601,507 + +0.6
1,601,514 - -1.0
1,601,518 - +0.3
1,601,524 + +0.8
1,601,524 + +0.4
1,601,524 + -0.7
1,601,532 - +0.1
1,601,539 + -0.8
1,601,547 - -0.3
1,601,572 - +0.3
1,601,594 + +0.2
1,601,602 - +0.0
1,601,613 - MPMX20_01532 0.10 +0.2
1,601,622 + MPMX20_01532 0.11 +0.3
1,601,714 + MPMX20_01532 0.16 +1.6
1,601,771 + MPMX20_01532 0.19 -1.1
1,601,772 - MPMX20_01532 0.19 -0.3
1,601,981 + MPMX20_01532 0.32 +0.2
1,601,989 - MPMX20_01532 0.32 -1.2
1,602,070 + MPMX20_01532 0.37 -1.0
1,602,147 + MPMX20_01532 0.41 +1.0
1,602,152 + MPMX20_01532 0.41 +1.7
1,602,155 - MPMX20_01532 0.42 -0.3
1,602,155 - MPMX20_01532 0.42 +4.2
1,602,255 - MPMX20_01532 0.47 +0.6
1,602,260 + MPMX20_01532 0.48 -0.4
1,602,260 + MPMX20_01532 0.48 -0.4
1,602,268 - MPMX20_01532 0.48 -0.4
1,602,347 + MPMX20_01532 0.53 -2.3
1,602,355 - MPMX20_01532 0.53 +0.5

Or see this region's nucleotide sequence