Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01464

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01463 and MPMX20_01464 are separated by 4 nucleotidesMPMX20_01464 and MPMX20_01465 are separated by 128 nucleotidesMPMX20_01465 and MPMX20_01466 are separated by 40 nucleotides MPMX20_01463: MPMX20_01463 - Trans-4-hydroxy-L-proline dehydratase, at 1,531,388 to 1,533,820 _01463 MPMX20_01464: MPMX20_01464 - Choline trimethylamine-lyase activating enzyme, at 1,533,825 to 1,534,724 _01464 MPMX20_01465: MPMX20_01465 - Fructose-6-phosphate aldolase 1, at 1,534,853 to 1,535,515 _01465 MPMX20_01466: MPMX20_01466 - Molybdopterin-synthase adenylyltransferase, at 1,535,556 to 1,536,308 _01466 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2at 1532.854 kb on + strand, within MPMX20_01463at 1532.854 kb on + strand, within MPMX20_01463at 1532.862 kb on - strand, within MPMX20_01463at 1532.862 kb on - strand, within MPMX20_01463at 1532.868 kb on + strand, within MPMX20_01463at 1532.878 kb on + strand, within MPMX20_01463at 1533.243 kb on - strand, within MPMX20_01463at 1533.292 kb on - strand, within MPMX20_01463at 1533.333 kb on - strand, within MPMX20_01463at 1533.372 kb on + strand, within MPMX20_01463at 1533.427 kb on + strand, within MPMX20_01463at 1533.427 kb on - strand, within MPMX20_01463at 1533.435 kb on - strand, within MPMX20_01463at 1533.487 kb on + strand, within MPMX20_01463at 1533.605 kb on - strandat 1533.668 kb on + strandat 1533.711 kb on + strandat 1533.711 kb on + strandat 1533.711 kb on + strandat 1533.711 kb on + strandat 1533.719 kb on - strandat 1533.719 kb on - strandat 1533.719 kb on - strandat 1533.732 kb on + strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.740 kb on - strandat 1533.790 kb on + strandat 1533.790 kb on + strandat 1533.798 kb on - strandat 1533.798 kb on - strandat 1533.798 kb on - strandat 1533.798 kb on - strandat 1533.798 kb on - strandat 1533.798 kb on - strandat 1533.843 kb on + strandat 1533.869 kb on + strandat 1533.870 kb on - strandat 1533.887 kb on - strandat 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.919 kb on + strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.927 kb on - strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.938 kb on + strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.946 kb on - strand, within MPMX20_01464at 1533.959 kb on + strand, within MPMX20_01464at 1533.996 kb on + strand, within MPMX20_01464at 1533.996 kb on + strand, within MPMX20_01464at 1534.067 kb on - strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.186 kb on + strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.194 kb on - strand, within MPMX20_01464at 1534.225 kb on - strand, within MPMX20_01464at 1534.261 kb on + strand, within MPMX20_01464at 1534.263 kb on + strand, within MPMX20_01464at 1534.263 kb on + strand, within MPMX20_01464at 1534.271 kb on - strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.285 kb on + strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.293 kb on - strand, within MPMX20_01464at 1534.303 kb on - strand, within MPMX20_01464at 1534.307 kb on + strand, within MPMX20_01464at 1534.333 kb on - strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.340 kb on + strand, within MPMX20_01464at 1534.348 kb on - strand, within MPMX20_01464at 1534.385 kb on + strand, within MPMX20_01464at 1534.432 kb on + strand, within MPMX20_01464at 1534.442 kb on + strand, within MPMX20_01464at 1534.460 kb on - strand, within MPMX20_01464at 1534.480 kb on + strand, within MPMX20_01464at 1534.505 kb on - strand, within MPMX20_01464at 1534.556 kb on + strand, within MPMX20_01464at 1534.657 kb on + strandat 1534.699 kb on + strandat 1534.699 kb on + strandat 1534.704 kb on + strandat 1534.707 kb on - strandat 1534.709 kb on + strandat 1534.805 kb on + strandat 1534.820 kb on + strandat 1534.922 kb on + strand, within MPMX20_01465at 1534.936 kb on + strand, within MPMX20_01465at 1535.029 kb on + strand, within MPMX20_01465at 1535.037 kb on - strand, within MPMX20_01465at 1535.037 kb on - strand, within MPMX20_01465at 1535.146 kb on + strand, within MPMX20_01465at 1535.173 kb on + strand, within MPMX20_01465at 1535.183 kb on + strand, within MPMX20_01465at 1535.183 kb on - strand, within MPMX20_01465at 1535.190 kb on + strand, within MPMX20_01465at 1535.193 kb on - strand, within MPMX20_01465at 1535.193 kb on - strand, within MPMX20_01465at 1535.195 kb on + strand, within MPMX20_01465at 1535.198 kb on + strand, within MPMX20_01465at 1535.331 kb on + strand, within MPMX20_01465at 1535.479 kb on + strandat 1535.484 kb on + strandat 1535.487 kb on - strandat 1535.570 kb on + strandat 1535.578 kb on - strandat 1535.615 kb on - strandat 1535.705 kb on + strand, within MPMX20_01466

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,532,854 + MPMX20_01463 0.60 +0.1
1,532,854 + MPMX20_01463 0.60 -2.4
1,532,862 - MPMX20_01463 0.61 +1.9
1,532,862 - MPMX20_01463 0.61 -0.4
1,532,868 + MPMX20_01463 0.61 +0.1
1,532,878 + MPMX20_01463 0.61 -0.7
1,533,243 - MPMX20_01463 0.76 -1.8
1,533,292 - MPMX20_01463 0.78 +0.3
1,533,333 - MPMX20_01463 0.80 -0.0
1,533,372 + MPMX20_01463 0.82 +0.7
1,533,427 + MPMX20_01463 0.84 -0.9
1,533,427 - MPMX20_01463 0.84 -0.5
1,533,435 - MPMX20_01463 0.84 +1.6
1,533,487 + MPMX20_01463 0.86 -0.2
1,533,605 - +0.8
1,533,668 + +1.9
1,533,711 + -0.6
1,533,711 + -0.5
1,533,711 + -1.1
1,533,711 + -0.3
1,533,719 - +0.3
1,533,719 - -0.4
1,533,719 - +0.5
1,533,732 + +0.5
1,533,740 - +0.1
1,533,740 - +0.4
1,533,740 - -0.1
1,533,740 - -0.2
1,533,740 - +0.2
1,533,740 - -0.7
1,533,740 - -1.2
1,533,740 - -1.6
1,533,790 + +0.2
1,533,790 + -0.4
1,533,798 - +0.3
1,533,798 - -1.0
1,533,798 - +1.4
1,533,798 - -0.8
1,533,798 - -1.3
1,533,798 - -0.3
1,533,843 + -0.1
1,533,869 + -0.9
1,533,870 - -0.8
1,533,887 - +0.9
1,533,919 + MPMX20_01464 0.10 -0.4
1,533,919 + MPMX20_01464 0.10 +0.2
1,533,919 + MPMX20_01464 0.10 +0.4
1,533,919 + MPMX20_01464 0.10 -0.4
1,533,919 + MPMX20_01464 0.10 -0.3
1,533,919 + MPMX20_01464 0.10 -0.4
1,533,919 + MPMX20_01464 0.10 +0.2
1,533,919 + MPMX20_01464 0.10 -1.5
1,533,919 + MPMX20_01464 0.10 -0.5
1,533,919 + MPMX20_01464 0.10 +1.0
1,533,919 + MPMX20_01464 0.10 -2.1
1,533,919 + MPMX20_01464 0.10 +0.2
1,533,919 + MPMX20_01464 0.10 -0.4
1,533,919 + MPMX20_01464 0.10 -0.1
1,533,919 + MPMX20_01464 0.10 +0.5
1,533,919 + MPMX20_01464 0.10 -1.7
1,533,919 + MPMX20_01464 0.10 -0.5
1,533,927 - MPMX20_01464 0.11 -0.6
1,533,927 - MPMX20_01464 0.11 -1.0
1,533,927 - MPMX20_01464 0.11 +0.8
1,533,927 - MPMX20_01464 0.11 +0.4
1,533,927 - MPMX20_01464 0.11 +0.2
1,533,927 - MPMX20_01464 0.11 +0.5
1,533,927 - MPMX20_01464 0.11 +2.0
1,533,927 - MPMX20_01464 0.11 +1.2
1,533,927 - MPMX20_01464 0.11 -0.5
1,533,938 + MPMX20_01464 0.13 +0.3
1,533,938 + MPMX20_01464 0.13 +0.1
1,533,938 + MPMX20_01464 0.13 +0.5
1,533,938 + MPMX20_01464 0.13 -0.4
1,533,938 + MPMX20_01464 0.13 -0.7
1,533,946 - MPMX20_01464 0.13 +1.5
1,533,946 - MPMX20_01464 0.13 -0.4
1,533,946 - MPMX20_01464 0.13 +0.8
1,533,946 - MPMX20_01464 0.13 -0.4
1,533,946 - MPMX20_01464 0.13 -1.3
1,533,959 + MPMX20_01464 0.15 -0.4
1,533,996 + MPMX20_01464 0.19 +1.2
1,533,996 + MPMX20_01464 0.19 +0.6
1,534,067 - MPMX20_01464 0.27 -0.6
1,534,186 + MPMX20_01464 0.40 -0.3
1,534,186 + MPMX20_01464 0.40 +1.8
1,534,186 + MPMX20_01464 0.40 -0.1
1,534,194 - MPMX20_01464 0.41 -0.1
1,534,194 - MPMX20_01464 0.41 +0.5
1,534,194 - MPMX20_01464 0.41 +1.0
1,534,225 - MPMX20_01464 0.44 -0.6
1,534,261 + MPMX20_01464 0.48 -0.9
1,534,263 + MPMX20_01464 0.49 -0.7
1,534,263 + MPMX20_01464 0.49 +0.4
1,534,271 - MPMX20_01464 0.50 +0.3
1,534,285 + MPMX20_01464 0.51 -0.3
1,534,285 + MPMX20_01464 0.51 +0.1
1,534,285 + MPMX20_01464 0.51 -0.1
1,534,285 + MPMX20_01464 0.51 +0.3
1,534,285 + MPMX20_01464 0.51 -0.9
1,534,285 + MPMX20_01464 0.51 +1.1
1,534,285 + MPMX20_01464 0.51 +0.2
1,534,293 - MPMX20_01464 0.52 +1.4
1,534,293 - MPMX20_01464 0.52 -1.6
1,534,293 - MPMX20_01464 0.52 -0.4
1,534,293 - MPMX20_01464 0.52 -0.5
1,534,293 - MPMX20_01464 0.52 -0.6
1,534,293 - MPMX20_01464 0.52 -0.0
1,534,293 - MPMX20_01464 0.52 +0.1
1,534,293 - MPMX20_01464 0.52 -0.0
1,534,293 - MPMX20_01464 0.52 +1.5
1,534,303 - MPMX20_01464 0.53 +0.5
1,534,307 + MPMX20_01464 0.54 -0.8
1,534,333 - MPMX20_01464 0.56 +0.1
1,534,340 + MPMX20_01464 0.57 -0.6
1,534,340 + MPMX20_01464 0.57 -1.4
1,534,340 + MPMX20_01464 0.57 +1.1
1,534,340 + MPMX20_01464 0.57 -0.1
1,534,340 + MPMX20_01464 0.57 +2.3
1,534,348 - MPMX20_01464 0.58 +1.1
1,534,385 + MPMX20_01464 0.62 +0.2
1,534,432 + MPMX20_01464 0.67 -0.7
1,534,442 + MPMX20_01464 0.69 -1.2
1,534,460 - MPMX20_01464 0.71 +0.2
1,534,480 + MPMX20_01464 0.73 -0.5
1,534,505 - MPMX20_01464 0.76 -0.8
1,534,556 + MPMX20_01464 0.81 +0.0
1,534,657 + -0.6
1,534,699 + +0.3
1,534,699 + +0.5
1,534,704 + -0.3
1,534,707 - +0.0
1,534,709 + -0.5
1,534,805 + +0.7
1,534,820 + -0.9
1,534,922 + MPMX20_01465 0.10 +0.1
1,534,936 + MPMX20_01465 0.13 +0.1
1,535,029 + MPMX20_01465 0.27 -0.5
1,535,037 - MPMX20_01465 0.28 +0.1
1,535,037 - MPMX20_01465 0.28 +0.6
1,535,146 + MPMX20_01465 0.44 -2.2
1,535,173 + MPMX20_01465 0.48 +0.1
1,535,183 + MPMX20_01465 0.50 +0.2
1,535,183 - MPMX20_01465 0.50 -0.3
1,535,190 + MPMX20_01465 0.51 +0.3
1,535,193 - MPMX20_01465 0.51 -1.4
1,535,193 - MPMX20_01465 0.51 +1.6
1,535,195 + MPMX20_01465 0.52 -0.0
1,535,198 + MPMX20_01465 0.52 +0.3
1,535,331 + MPMX20_01465 0.72 +0.8
1,535,479 + +0.1
1,535,484 + -0.4
1,535,487 - +0.4
1,535,570 + -0.3
1,535,578 - +1.0
1,535,615 - -0.2
1,535,705 + MPMX20_01466 0.20 -0.5

Or see this region's nucleotide sequence